Wall clock time and date at job start Mon Mar 30 2020 02:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 C 1.52999 * 109.46901 * 119.99491 * 2 1 3 5 5 C 1.52999 * 109.46797 * 174.97025 * 4 2 1 6 6 H 1.09004 * 110.33850 * 53.80709 * 5 4 2 7 7 C 1.55375 * 110.35294 * 291.46972 * 5 4 2 8 8 C 1.55139 * 101.44352 * 204.11842 * 7 5 4 9 9 C 1.54325 * 103.17864 * 35.64189 * 8 7 5 10 10 N 1.47446 * 107.22725 * 337.63189 * 9 8 7 11 11 C 1.46904 * 110.99605 * 236.73844 * 10 9 8 12 12 H 1.08994 * 109.46967 * 58.71771 * 11 10 9 13 13 C 1.53005 * 109.46819 * 178.71779 * 11 10 9 14 14 C 1.50699 * 109.47422 * 298.71333 * 11 10 9 15 15 H 1.08004 * 119.99802 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00211 * 179.97438 * 14 11 10 17 17 N 1.31511 * 119.99776 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00250 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47126 * 89.99881 * 18 16 14 20 20 H 1.48497 * 109.47287 * 210.00159 * 18 16 14 21 21 H 1.48505 * 109.47010 * 330.00433 * 18 16 14 22 22 H 1.08995 * 109.47772 * 300.00431 * 1 2 3 23 23 H 1.09005 * 109.47219 * 60.00631 * 1 2 3 24 24 H 1.09008 * 109.46771 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47420 * 239.99959 * 2 1 3 26 26 H 1.09007 * 109.47267 * 299.78675 * 3 2 1 27 27 H 1.09000 * 109.47435 * 59.78857 * 3 2 1 28 28 H 1.08999 * 109.47135 * 179.79066 * 3 2 1 29 29 H 1.08992 * 109.47484 * 54.97415 * 4 2 1 30 30 H 1.08999 * 109.47435 * 294.96530 * 4 2 1 31 31 H 1.08995 * 111.17344 * 86.05990 * 7 5 4 32 32 H 1.09004 * 111.00881 * 322.09441 * 7 5 4 33 33 H 1.09004 * 110.70383 * 277.17894 * 8 7 5 34 34 H 1.08996 * 110.71132 * 154.11667 * 8 7 5 35 35 H 1.08996 * 109.88646 * 97.03283 * 9 8 7 36 36 H 1.08995 * 109.89008 * 218.06626 * 9 8 7 37 37 H 1.08999 * 109.47099 * 293.45880 * 13 11 10 38 38 H 1.09001 * 109.47138 * 53.46000 * 13 11 10 39 39 H 1.09003 * 109.46911 * 173.45972 * 13 11 10 40 40 H 0.97000 * 119.99924 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5647 -0.8316 1.1877 6 1 4.0097 0.1511 1.0310 7 6 3.9905 -1.8070 0.0557 8 6 5.3908 -2.2577 0.5484 9 6 5.2229 -2.3148 2.0814 10 7 4.0872 -1.4411 2.4291 11 6 4.4930 -0.4087 3.3922 12 1 5.2997 0.1882 2.9667 13 6 3.2989 0.4959 3.7036 14 6 4.9699 -1.0656 4.6619 15 1 4.9719 -2.1424 4.7449 16 6 5.4048 -0.2920 5.7171 17 7 5.4029 1.0192 5.6157 18 14 5.9967 -1.1064 7.2906 19 1 7.4570 -1.3597 7.1978 20 1 5.7216 -0.2127 8.4442 21 1 5.2821 -2.3942 7.4805 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0278 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6797 1.9553 -0.8919 27 1 1.6735 1.9575 0.8881 28 1 3.1299 1.4426 0.0038 29 1 1.6050 -1.7195 1.2956 30 1 1.7521 -0.1578 2.1370 31 1 4.0608 -1.2918 -0.9022 32 1 3.3076 -2.6543 -0.0075 33 1 6.1506 -1.5270 0.2710 34 1 5.6410 -3.2415 0.1512 35 1 5.0128 -3.3378 2.3936 36 1 6.1308 -1.9579 2.5675 37 1 3.0271 1.0590 2.8108 38 1 2.4531 -0.1149 4.0194 39 1 3.5658 1.1878 4.5024 40 1 5.7086 1.5634 6.3582 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396921993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:15 Heat of formation + Delta-G solvation = -19.559883 kcal Electronic energy + Delta-G solvation = -16760.899740 eV Core-core repulsion = 14381.626927 eV Total energy + Delta-G solvation = -2379.272814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.81112 -35.62979 -33.68199 -31.12847 -29.57124 -27.47419 -26.93272 -25.04871 -24.82883 -21.21642 -20.54919 -19.24573 -18.89527 -16.05671 -15.51497 -15.12711 -14.52029 -14.22335 -13.74238 -13.21087 -12.93470 -12.58541 -12.37409 -12.07278 -12.02135 -11.88198 -11.34203 -11.07345 -10.93668 -10.83288 -10.65501 -10.63059 -10.45381 -10.33889 -10.03637 -10.02337 -9.88743 -9.70468 -9.53350 -8.82444 -8.35562 -7.07080 -5.96224 -4.00834 3.32608 3.39170 3.43856 4.44433 4.85159 5.17586 5.21526 5.29507 5.33753 5.36339 5.44808 5.63728 5.81403 5.86973 5.97469 6.02053 6.05669 6.08986 6.19210 6.22567 6.28466 6.42385 6.44245 6.48054 6.59164 6.74352 6.82391 6.87915 6.91723 6.92336 7.12821 7.18676 7.57525 7.80793 7.89879 8.28959 8.42938 8.67283 9.07121 9.64215 11.09780 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031073 B = 0.008079 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.898490 B = 3464.921019 C = 4006.299351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.103 4.103 5 C 0.074 3.926 6 H 0.047 0.953 7 C -0.123 4.123 8 C -0.145 4.145 9 C 0.055 3.945 10 N -0.523 5.523 11 C 0.210 3.790 12 H -0.004 1.004 13 C -0.134 4.134 14 C -0.499 4.499 15 H 0.061 0.939 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.012 0.988 38 H 0.032 0.968 39 H 0.084 0.916 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 -2.089 -10.724 12.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.141 4.141 5 C -0.035 4.035 6 H 0.065 0.935 7 C -0.162 4.162 8 C -0.183 4.183 9 C -0.073 4.073 10 N -0.248 5.248 11 C 0.104 3.896 12 H 0.013 0.987 13 C -0.192 4.192 14 C -0.538 4.538 15 H 0.079 0.921 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.031 0.969 38 H 0.051 0.949 39 H 0.103 0.897 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.389 -2.213 -10.344 11.872 hybrid contribution 1.039 0.147 0.554 1.187 sum -4.350 -2.066 -9.790 10.910 Atomic orbital electron populations 1.21820 0.95829 1.01294 1.01221 1.21126 0.95090 0.96326 0.98983 1.21884 1.01372 0.96154 1.01068 1.21746 0.94767 1.00257 0.97326 1.22576 0.95132 0.96007 0.89737 0.93467 1.22815 0.96556 0.99168 0.97611 1.22831 0.97074 1.00543 0.97895 1.22566 0.94564 0.98017 0.92147 1.63567 1.30561 1.21289 1.09348 1.19381 0.92303 0.87940 0.89983 0.98683 1.21927 0.97866 0.99568 0.99872 1.21166 1.41051 0.93334 0.98224 0.92119 1.24929 0.95969 0.94826 0.98630 1.69892 1.47806 1.03714 1.31979 0.86550 0.78899 0.79323 0.82953 1.20862 1.21311 1.19882 0.92753 0.93369 0.92989 0.91798 0.93581 0.92609 0.92488 0.92258 0.90542 0.92192 0.91402 0.92338 0.92004 0.92291 0.92085 0.96939 0.94865 0.89737 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 37.16 0.34 -1.37 16 2 C -0.10 -1.30 2.85 -90.62 -0.26 -1.56 16 3 C -0.15 -2.01 8.97 37.16 0.33 -1.68 16 4 C -0.10 -1.71 4.10 -26.73 -0.11 -1.82 16 5 C 0.07 1.36 1.70 -65.93 -0.11 1.25 16 6 H 0.05 0.93 5.72 -51.93 -0.30 0.64 16 7 C -0.12 -1.92 5.75 -24.34 -0.14 -2.06 16 8 C -0.14 -2.35 6.93 -24.91 -0.17 -2.52 16 9 C 0.06 1.11 6.10 -2.83 -0.02 1.10 16 10 N -0.52 -11.48 4.70 -216.55 -1.02 -12.49 16 11 C 0.21 5.39 1.63 -68.86 -0.11 5.27 16 12 H 0.00 -0.12 8.13 -51.93 -0.42 -0.55 16 13 C -0.13 -3.31 7.57 37.16 0.28 -3.03 16 14 C -0.50 -13.91 7.74 -34.44 -0.27 -14.17 16 15 H 0.06 1.70 7.49 -52.48 -0.39 1.31 16 16 C 0.06 1.60 5.29 -17.82 -0.09 1.50 16 17 N -0.89 -25.79 11.29 55.43 0.63 -25.16 16 18 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 25 H 0.06 0.82 7.29 -51.93 -0.38 0.44 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.83 6.45 -51.93 -0.33 0.50 16 29 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 30 H 0.08 1.41 5.15 -51.93 -0.27 1.15 16 31 H 0.06 0.82 7.96 -51.93 -0.41 0.41 16 32 H 0.07 1.01 8.00 -51.93 -0.42 0.60 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.35 7.11 -51.93 -0.37 0.98 16 37 H 0.01 0.26 6.23 -51.93 -0.32 -0.06 16 38 H 0.03 0.80 7.55 -51.93 -0.39 0.41 16 39 H 0.08 2.30 5.92 -51.93 -0.31 1.99 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 299.17 15.07 4.51 4.51 Total: -1.00 -28.32 299.17 -8.48 -36.80 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.25 Total: -1.17 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -0.33 Total: -19.09 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.39 Total: -37.66 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.32 -8.48 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396921993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.244 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds