Wall clock time and date at job start Mon Mar 30 2020 02:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 C 1.52999 * 109.46901 * 119.99491 * 2 1 3 5 5 C 1.52999 * 109.46797 * 174.97025 * 4 2 1 6 6 H 1.09004 * 110.33850 * 53.80709 * 5 4 2 7 7 C 1.55375 * 110.35294 * 291.46972 * 5 4 2 8 8 C 1.55139 * 101.44352 * 204.11842 * 7 5 4 9 9 C 1.54325 * 103.17864 * 35.64189 * 8 7 5 10 10 N 1.47446 * 107.22725 * 337.63189 * 9 8 7 11 11 C 1.46904 * 110.99605 * 236.73844 * 10 9 8 12 12 H 1.08994 * 109.46967 * 58.71771 * 11 10 9 13 13 C 1.53005 * 109.46819 * 178.71779 * 11 10 9 14 14 C 1.50699 * 109.47422 * 298.71333 * 11 10 9 15 15 H 1.08004 * 119.99802 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00211 * 179.97438 * 14 11 10 17 17 N 1.31511 * 119.99776 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00250 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47126 * 89.99881 * 18 16 14 20 20 H 1.48497 * 109.47287 * 210.00159 * 18 16 14 21 21 H 1.48505 * 109.47010 * 330.00433 * 18 16 14 22 22 H 1.08995 * 109.47772 * 300.00431 * 1 2 3 23 23 H 1.09005 * 109.47219 * 60.00631 * 1 2 3 24 24 H 1.09008 * 109.46771 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47420 * 239.99959 * 2 1 3 26 26 H 1.09007 * 109.47267 * 299.78675 * 3 2 1 27 27 H 1.09000 * 109.47435 * 59.78857 * 3 2 1 28 28 H 1.08999 * 109.47135 * 179.79066 * 3 2 1 29 29 H 1.08992 * 109.47484 * 54.97415 * 4 2 1 30 30 H 1.08999 * 109.47435 * 294.96530 * 4 2 1 31 31 H 1.08995 * 111.17344 * 86.05990 * 7 5 4 32 32 H 1.09004 * 111.00881 * 322.09441 * 7 5 4 33 33 H 1.09004 * 110.70383 * 277.17894 * 8 7 5 34 34 H 1.08996 * 110.71132 * 154.11667 * 8 7 5 35 35 H 1.08996 * 109.88646 * 97.03283 * 9 8 7 36 36 H 1.08995 * 109.89008 * 218.06626 * 9 8 7 37 37 H 1.08999 * 109.47099 * 293.45880 * 13 11 10 38 38 H 1.09001 * 109.47138 * 53.46000 * 13 11 10 39 39 H 1.09003 * 109.46911 * 173.45972 * 13 11 10 40 40 H 0.97000 * 119.99924 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5647 -0.8316 1.1877 6 1 4.0097 0.1511 1.0310 7 6 3.9905 -1.8070 0.0557 8 6 5.3908 -2.2577 0.5484 9 6 5.2229 -2.3148 2.0814 10 7 4.0872 -1.4411 2.4291 11 6 4.4930 -0.4087 3.3922 12 1 5.2997 0.1882 2.9667 13 6 3.2989 0.4959 3.7036 14 6 4.9699 -1.0656 4.6619 15 1 4.9719 -2.1424 4.7449 16 6 5.4048 -0.2920 5.7171 17 7 5.4029 1.0192 5.6157 18 14 5.9967 -1.1064 7.2906 19 1 7.4570 -1.3597 7.1978 20 1 5.7216 -0.2127 8.4442 21 1 5.2821 -2.3942 7.4805 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0278 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6797 1.9553 -0.8919 27 1 1.6735 1.9575 0.8881 28 1 3.1299 1.4426 0.0038 29 1 1.6050 -1.7195 1.2956 30 1 1.7521 -0.1578 2.1370 31 1 4.0608 -1.2918 -0.9022 32 1 3.3076 -2.6543 -0.0075 33 1 6.1506 -1.5270 0.2710 34 1 5.6410 -3.2415 0.1512 35 1 5.0128 -3.3378 2.3936 36 1 6.1308 -1.9579 2.5675 37 1 3.0271 1.0590 2.8108 38 1 2.4531 -0.1149 4.0194 39 1 3.5658 1.1878 4.5024 40 1 5.7086 1.5634 6.3582 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396921993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:14 Heat of formation + Delta-G solvation = -35.781923 kcal Electronic energy + Delta-G solvation = -16761.603181 eV Core-core repulsion = 14381.626927 eV Total energy + Delta-G solvation = -2379.976254 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.35023 -36.90794 -35.59504 -33.03276 -30.95643 -29.24933 -27.96889 -27.15821 -26.20395 -22.90815 -21.98572 -20.82600 -20.28028 -18.16393 -17.23374 -16.60329 -16.06475 -15.75531 -15.09539 -14.89045 -14.35170 -13.99806 -13.86406 -13.71359 -13.57715 -13.04965 -12.94501 -12.75415 -12.63289 -12.47139 -12.22789 -12.16599 -11.99742 -11.84450 -11.62682 -11.45693 -11.38620 -11.33627 -11.07522 -10.80723 -10.47688 -8.85981 -8.11348 -6.24077 1.39498 1.40574 1.51677 2.41192 3.15389 3.37032 3.86657 3.91127 4.15951 4.17662 4.21169 4.27549 4.52516 4.64788 4.73662 4.79994 4.85764 4.89632 4.92531 5.00742 5.04423 5.06134 5.10694 5.12706 5.18436 5.18541 5.27435 5.28553 5.42975 5.44474 5.50270 5.59358 5.63195 5.73767 5.88526 6.29559 6.46281 6.78590 6.92554 7.45570 8.93653 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031073 B = 0.008079 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.898490 B = 3464.921019 C = 4006.299351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.097 4.097 5 C 0.068 3.932 6 H 0.029 0.971 7 C -0.112 4.112 8 C -0.136 4.136 9 C 0.049 3.951 10 N -0.534 5.534 11 C 0.219 3.781 12 H -0.045 1.045 13 C -0.116 4.116 14 C -0.518 4.518 15 H 0.053 0.947 16 C 0.009 3.991 17 N -0.921 5.921 18 Si 0.959 3.041 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.270 1.270 22 H 0.045 0.955 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.030 0.970 39 H 0.056 0.944 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 -3.176 -12.220 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.135 4.135 5 C -0.040 4.040 6 H 0.047 0.953 7 C -0.149 4.149 8 C -0.174 4.174 9 C -0.079 4.079 10 N -0.258 5.258 11 C 0.112 3.888 12 H -0.027 1.027 13 C -0.174 4.174 14 C -0.556 4.556 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.561 5.561 18 Si 0.785 3.215 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.194 1.194 22 H 0.064 0.936 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.108 -3.309 -11.855 13.740 hybrid contribution 1.269 0.493 0.997 1.687 sum -4.839 -2.816 -10.858 12.217 Atomic orbital electron populations 1.21794 0.94321 1.01991 1.01782 1.21091 0.96292 0.95737 0.97749 1.21878 1.00414 0.96570 1.01571 1.21676 0.93425 1.00372 0.98045 1.22718 0.96072 0.95821 0.89392 0.95276 1.22794 0.95909 0.98881 0.97355 1.22778 0.97737 1.02332 0.94578 1.22599 0.92660 0.97456 0.95155 1.63532 1.31036 1.20410 1.10854 1.19122 0.91190 0.88336 0.90186 1.02742 1.21698 0.97305 0.98873 0.99568 1.21420 1.41628 0.93061 0.99491 0.92914 1.25722 0.95999 0.95379 1.01781 1.70022 1.48246 1.04898 1.32908 0.85535 0.78531 0.78435 0.79010 1.20159 1.20682 1.19435 0.93618 0.91428 0.92256 0.90136 0.91203 0.94012 0.93943 0.92071 0.93130 0.89523 0.90008 0.92461 0.88993 0.91907 0.95230 0.95213 0.95064 0.92518 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.19 71.98 0.66 -2.33 16 2 C -0.09 -2.22 2.85 -10.79 -0.03 -2.25 16 3 C -0.15 -3.79 8.97 71.98 0.65 -3.14 16 4 C -0.10 -3.12 4.10 30.59 0.13 -2.99 16 5 C 0.07 2.46 1.70 45.55 0.08 2.53 16 6 H 0.03 1.17 5.72 -2.38 -0.01 1.15 16 7 C -0.11 -3.14 5.75 32.14 0.18 -2.96 16 8 C -0.14 -4.14 6.93 31.78 0.22 -3.92 16 9 C 0.05 2.00 6.10 86.65 0.53 2.53 16 10 N -0.53 -23.74 4.70 -839.02 -3.94 -27.68 16 11 C 0.22 11.66 1.63 44.17 0.07 11.73 16 12 H -0.04 -2.69 8.13 -2.39 -0.02 -2.71 16 13 C -0.12 -5.94 7.57 71.98 0.55 -5.40 16 14 C -0.52 -29.70 7.74 25.60 0.20 -29.50 16 15 H 0.05 3.04 7.49 -2.91 -0.02 3.01 16 16 C 0.01 0.54 5.29 84.65 0.45 0.99 16 17 N -0.92 -54.52 11.29 21.45 0.24 -54.28 16 18 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.08 1.76 7.29 -2.39 -0.02 1.75 16 26 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 1.20 6.45 -2.39 -0.02 1.19 16 29 H 0.06 1.92 8.06 -2.39 -0.02 1.90 16 30 H 0.05 1.87 5.15 -2.39 -0.01 1.86 16 31 H 0.09 2.03 7.96 -2.39 -0.02 2.01 16 32 H 0.08 2.12 8.00 -2.38 -0.02 2.10 16 33 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.03 1.35 7.11 -2.39 -0.02 1.33 16 37 H 0.03 1.36 6.23 -2.39 -0.01 1.34 16 38 H 0.03 1.55 7.55 -2.39 -0.02 1.53 16 39 H 0.06 3.20 5.92 -2.39 -0.01 3.19 16 40 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -62.45 299.17 2.98 -59.48 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.97 Total: 10.25 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 3.68 Total: -34.71 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -3.70 Total: -81.96 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -62.45 2.98 -59.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396921993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.697 kcal (2) G-P(sol) polarization free energy of solvation -62.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds