Wall clock time and date at job start Mon Mar 30 2020 02:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47033 * 2 1 4 4 C 1.50695 * 109.47617 * 239.99633 * 2 1 3 5 5 H 1.08001 * 120.00083 * 240.00270 * 4 2 1 6 6 C 1.37879 * 119.99837 * 59.99720 * 4 2 1 7 7 N 1.31511 * 120.00030 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00045 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47256 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.47242 * 210.00528 * 8 6 4 11 11 H 1.48504 * 109.47110 * 330.00319 * 8 6 4 12 12 N 1.46903 * 109.47177 * 119.99490 * 2 1 3 13 13 C 1.46891 * 111.00213 * 176.04888 * 12 2 1 14 14 C 1.46904 * 110.99931 * 300.00530 * 12 2 1 15 15 H 1.08998 * 109.47141 * 54.99768 * 14 12 2 16 16 C 1.53004 * 109.47107 * 294.99564 * 14 12 2 17 17 C 1.53006 * 109.46988 * 174.99612 * 14 12 2 18 18 H 1.09004 * 115.54762 * 39.03801 * 17 14 12 19 19 C 1.52997 * 117.49483 * 184.70250 * 17 14 12 20 20 C 1.52999 * 117.49885 * 253.32590 * 17 14 12 21 21 C 1.52995 * 117.49793 * 359.97438 * 20 17 14 22 22 C 1.52995 * 117.49619 * 145.02184 * 20 17 14 23 23 H 1.09002 * 109.46996 * 60.00575 * 1 2 3 24 24 H 1.09008 * 109.46933 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47622 * 300.00446 * 1 2 3 26 26 H 0.97003 * 120.00224 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.47336 * 59.99882 * 13 12 2 28 28 H 1.09007 * 109.47159 * 180.02562 * 13 12 2 29 29 H 1.08998 * 109.47227 * 299.99974 * 13 12 2 30 30 H 1.09002 * 109.47093 * 296.14333 * 16 14 12 31 31 H 1.08997 * 109.46864 * 56.13656 * 16 14 12 32 32 H 1.08995 * 109.46837 * 176.13698 * 16 14 12 33 33 H 1.09004 * 117.49785 * 214.97957 * 19 17 14 34 34 H 1.08996 * 117.50565 * 0.02562 * 19 17 14 35 35 H 1.08999 * 109.47172 * 61.21217 * 21 20 17 36 36 H 1.09004 * 109.47183 * 181.21159 * 21 20 17 37 37 H 1.09000 * 109.47532 * 301.21341 * 21 20 17 38 38 H 1.09003 * 109.47320 * 60.00287 * 22 20 17 39 39 H 1.09004 * 109.47109 * 179.97438 * 22 20 17 40 40 H 1.09000 * 109.47368 * 299.99535 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3429 -2.1619 -4.4117 10 1 2.4868 -0.1416 -5.1121 11 1 3.6295 -1.7585 -3.7120 12 7 2.0196 -0.6924 1.1995 13 6 3.4850 -0.7944 1.1872 14 6 1.5485 -0.0262 2.4211 15 1 0.4617 0.0527 2.3958 16 6 2.1597 1.3738 2.5067 17 6 1.9722 -0.8433 3.6434 18 1 2.9668 -1.2863 3.5909 19 6 1.4802 -0.3719 5.0133 20 6 0.8855 -1.6305 4.3782 21 6 -0.5419 -1.5400 3.8350 22 6 1.2776 -2.9799 4.9832 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7095 1.1616 -3.4845 27 1 3.9186 0.2053 1.1592 28 1 3.8208 -1.3115 2.0861 29 1 3.8029 -1.3531 0.3069 30 1 3.2426 1.2924 2.6009 31 1 1.9147 1.9330 1.6037 32 1 1.7572 1.8934 3.3762 33 1 2.1508 -0.5053 5.8622 34 1 0.8543 0.5199 5.0438 35 1 -0.5683 -1.9273 2.8164 36 1 -1.2085 -2.1290 4.4650 37 1 -0.8660 -0.4993 3.8364 38 1 2.0716 -2.8329 5.7154 39 1 0.4108 -3.4246 5.4722 40 1 1.6298 -3.6436 4.1936 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397596470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:55 Heat of formation + Delta-G solvation = 5.946444 kcal Electronic energy + Delta-G solvation = -16722.547753 eV Core-core repulsion = 14344.380976 eV Total energy + Delta-G solvation = -2378.166776 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.44976 -38.04365 -34.91551 -31.98006 -30.73977 -29.46045 -28.30724 -27.37010 -25.93656 -24.76628 -21.92402 -20.32207 -19.24543 -18.37071 -17.13311 -16.50711 -15.94160 -15.36108 -15.00326 -14.82344 -14.64955 -14.38477 -13.68929 -13.43343 -13.33035 -13.16069 -13.03704 -12.89545 -12.81315 -12.64956 -12.58034 -12.40037 -12.01671 -11.98505 -11.92527 -11.79099 -11.15031 -10.82048 -10.71972 -10.47492 -10.22550 -8.74771 -8.09696 -6.20745 1.41475 1.42332 1.52308 2.42663 2.87351 3.18318 3.46273 3.80058 3.95844 4.17442 4.30425 4.37532 4.41522 4.56311 4.63899 4.77912 4.82406 4.85646 4.87926 4.92120 4.94965 5.05022 5.09661 5.11938 5.12303 5.15737 5.18026 5.28558 5.33402 5.40123 5.50139 5.57205 5.60275 5.77766 5.85991 6.29895 6.48250 6.85948 6.96200 7.48377 8.96197 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038156 B = 0.007129 C = 0.007062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.661956 B = 3926.785067 C = 3963.941249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.217 3.783 3 H -0.030 1.030 4 C -0.519 4.519 5 H 0.057 0.943 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.535 5.535 13 C 0.040 3.960 14 C 0.104 3.896 15 H 0.075 0.925 16 C -0.174 4.174 17 C -0.143 4.143 18 H 0.101 0.899 19 C -0.157 4.157 20 C -0.126 4.126 21 C -0.112 4.112 22 C -0.109 4.109 23 H 0.057 0.943 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.261 0.739 27 H 0.008 0.992 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 -3.341 14.146 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.111 3.889 3 H -0.012 1.012 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.258 5.258 13 C -0.109 4.109 14 C -0.004 4.004 15 H 0.093 0.907 16 C -0.233 4.233 17 C -0.161 4.161 18 H 0.119 0.881 19 C -0.194 4.194 20 C -0.126 4.126 21 C -0.169 4.169 22 C -0.166 4.166 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.026 0.974 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.493 -3.713 13.991 14.484 hybrid contribution 0.555 0.766 -1.327 1.630 sum 1.048 -2.947 12.664 13.045 Atomic orbital electron populations 1.21628 0.97769 0.98857 0.99353 1.19010 0.92218 0.90593 0.87123 1.01215 1.21492 1.30878 1.12157 0.91173 0.92447 1.25698 0.95479 0.95780 1.01842 1.70022 1.37996 1.24232 1.23913 0.85561 0.78841 0.78244 0.79010 1.20214 1.20971 1.19353 1.62213 1.09846 1.51904 1.01850 1.22200 0.88573 0.98757 1.01336 1.21311 0.99361 0.90722 0.89020 0.90724 1.22313 1.01373 0.98542 1.01022 1.22359 0.98820 1.03156 0.91809 0.88127 1.23288 1.03293 0.97537 0.95277 1.21643 0.94363 0.93819 1.02777 1.21305 0.93894 1.01405 1.00337 1.21310 1.01678 0.93753 0.99829 0.92379 0.95365 0.95505 0.93036 0.97365 0.90817 0.92900 0.92647 0.95029 0.90966 0.87343 0.88928 0.93824 0.90941 0.93001 0.91611 0.91263 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.75 71.98 0.63 -5.32 16 2 C 0.22 11.28 1.78 44.17 0.08 11.36 16 3 H -0.03 -1.70 6.36 -2.39 -0.02 -1.71 16 4 C -0.52 -29.15 7.93 25.60 0.20 -28.94 16 5 H 0.06 3.22 6.39 -2.91 -0.02 3.20 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -54.02 11.32 21.45 0.24 -53.77 16 8 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.53 -23.24 4.61 -876.19 -4.04 -27.28 16 13 C 0.04 1.59 8.50 127.69 1.09 2.67 16 14 C 0.10 3.75 2.09 44.92 0.09 3.85 16 15 H 0.07 2.82 3.95 -2.39 -0.01 2.81 16 16 C -0.17 -6.02 8.31 71.98 0.60 -5.42 16 17 C -0.14 -4.15 4.73 -10.79 -0.05 -4.20 16 18 H 0.10 2.94 6.08 -2.39 -0.01 2.93 16 19 C -0.16 -3.57 9.15 30.59 0.28 -3.29 16 20 C -0.13 -3.18 2.70 -52.18 -0.14 -3.32 16 21 C -0.11 -2.97 8.38 71.98 0.60 -2.36 16 22 C -0.11 -2.30 9.85 71.98 0.71 -1.59 16 23 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 24 H 0.03 1.39 8.14 -2.38 -0.02 1.38 16 25 H 0.03 1.19 6.30 -2.39 -0.02 1.18 16 26 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.01 0.32 6.60 -2.38 -0.02 0.31 16 28 H 0.07 2.47 5.95 -2.38 -0.01 2.46 16 29 H 0.05 2.29 6.23 -2.39 -0.01 2.28 16 30 H 0.05 1.85 6.69 -2.39 -0.02 1.83 16 31 H 0.03 1.27 6.35 -2.39 -0.02 1.26 16 32 H 0.07 2.09 7.75 -2.39 -0.02 2.07 16 33 H 0.11 2.04 8.05 -2.39 -0.02 2.02 16 34 H 0.09 2.07 7.86 -2.39 -0.02 2.05 16 35 H 0.04 1.37 8.11 -2.39 -0.02 1.35 16 36 H 0.07 1.58 7.94 -2.38 -0.02 1.56 16 37 H 0.05 1.36 7.28 -2.39 -0.02 1.34 16 38 H 0.06 1.20 7.90 -2.39 -0.02 1.18 16 39 H 0.07 1.27 7.94 -2.38 -0.02 1.25 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -60.54 298.66 3.76 -56.78 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.00 Total: 13.33 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 4.54 Total: -35.56 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -3.80 Total: -81.05 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -60.54 3.76 -56.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.727 kcal (2) G-P(sol) polarization free energy of solvation -60.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds