Wall clock time and date at job start Mon Mar 30 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47380 * 2 1 4 4 C 1.50700 * 109.47278 * 239.99909 * 2 1 3 5 5 H 1.08003 * 119.99975 * 245.31012 * 4 2 1 6 6 C 1.37873 * 119.99821 * 65.31992 * 4 2 1 7 7 N 1.31510 * 120.00508 * 7.64216 * 6 4 2 8 8 Si 1.86800 * 119.99863 * 187.64286 * 6 4 2 9 9 H 1.48503 * 109.46912 * 84.98829 * 8 6 4 10 10 H 1.48498 * 109.47364 * 204.98741 * 8 6 4 11 11 H 1.48503 * 109.47253 * 324.99092 * 8 6 4 12 12 N 1.46903 * 109.47128 * 119.99717 * 2 1 3 13 13 C 1.46900 * 110.99681 * 58.95933 * 12 2 1 14 14 C 1.46897 * 111.00203 * 295.00204 * 12 2 1 15 15 H 1.09000 * 109.46898 * 72.08143 * 14 12 2 16 16 C 1.52999 * 109.47177 * 312.08456 * 14 12 2 17 17 C 1.53003 * 109.47292 * 192.08239 * 14 12 2 18 18 H 1.09002 * 115.54917 * 78.99588 * 17 14 12 19 19 C 1.52999 * 117.49622 * 293.33206 * 17 14 12 20 20 C 1.52994 * 117.50096 * 224.67249 * 17 14 12 21 21 C 1.53000 * 117.50233 * 214.98020 * 20 17 14 22 22 C 1.53003 * 117.49593 * 359.97438 * 20 17 14 23 23 H 1.09006 * 109.46901 * 181.99273 * 1 2 3 24 24 H 1.09001 * 109.47315 * 301.98371 * 1 2 3 25 25 H 1.08994 * 109.47054 * 61.99061 * 1 2 3 26 26 H 0.96994 * 120.00442 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.47215 * 48.93431 * 13 12 2 28 28 H 1.09004 * 109.46924 * 168.93621 * 13 12 2 29 29 H 1.08997 * 109.47066 * 288.93092 * 13 12 2 30 30 H 1.09001 * 109.46937 * 306.77424 * 16 14 12 31 31 H 1.09000 * 109.47444 * 66.77054 * 16 14 12 32 32 H 1.08998 * 109.47077 * 186.77680 * 16 14 12 33 33 H 1.09000 * 117.49999 * 0.02562 * 19 17 14 34 34 H 1.09001 * 117.49514 * 144.99797 * 19 17 14 35 35 H 1.08997 * 109.46980 * 59.99342 * 21 20 17 36 36 H 1.08995 * 109.47615 * 179.97438 * 21 20 17 37 37 H 1.09002 * 109.46522 * 299.99895 * 21 20 17 38 38 H 1.08995 * 109.47597 * 64.60707 * 22 20 17 39 39 H 1.09004 * 109.47155 * 184.60412 * 22 20 17 40 40 H 1.08997 * 109.47008 * 304.60264 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5807 -1.6358 -1.1336 6 6 1.7921 -0.1789 -2.4797 7 7 1.2592 1.0180 -2.5938 8 14 2.2235 -1.1588 -4.0104 9 1 1.1044 -2.0770 -4.3420 10 1 2.4536 -0.2289 -5.1450 11 1 3.4553 -1.9498 -3.7609 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0392 2.4181 15 1 0.5778 -0.0654 2.5928 16 6 1.9957 1.5198 2.2496 17 6 2.4182 -0.5326 3.6105 18 1 3.4532 -0.2034 3.7035 19 6 2.0903 -1.9632 4.0426 20 6 1.6370 -0.7806 4.9023 21 6 2.3682 -0.5482 6.2260 22 6 0.1459 -0.4374 4.9030 23 1 -0.3633 -1.0271 0.0357 24 1 -0.3634 0.5443 0.8717 25 1 -0.3633 0.4826 -0.9072 26 1 1.0898 1.3918 -3.4726 27 1 1.7050 -2.5569 0.2838 28 1 2.0557 -2.6228 2.0277 29 1 0.4598 -2.0752 1.4609 30 1 3.0410 1.6168 1.9563 31 1 1.3602 1.9566 1.4793 32 1 1.8332 2.0406 3.1932 33 1 1.3267 -2.4972 3.4771 34 1 2.9096 -2.5752 4.4200 35 1 2.6961 0.4897 6.2825 36 1 1.6944 -0.7617 7.0557 37 1 3.2350 -1.2067 6.2826 38 1 -0.3763 -1.0848 4.1986 39 1 -0.2607 -0.5863 5.9034 40 1 0.0125 0.6033 4.6078 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397596471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:57 Heat of formation + Delta-G solvation = 24.974153 kcal Electronic energy + Delta-G solvation = -16735.349707 eV Core-core repulsion = 14358.008034 eV Total energy + Delta-G solvation = -2377.341673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24101 -36.46411 -32.73113 -30.56069 -29.38132 -28.13263 -27.42789 -25.12767 -24.33457 -22.96856 -20.72188 -18.92985 -18.05164 -16.12233 -15.35056 -14.88118 -14.43388 -14.11052 -13.68343 -13.35149 -13.12627 -12.82078 -12.31842 -12.21374 -11.96168 -11.72391 -11.40315 -11.34802 -11.15853 -10.98393 -10.87561 -10.78209 -10.59042 -10.51196 -10.27481 -9.94391 -9.70880 -9.47823 -8.99862 -8.76974 -8.27570 -7.01208 -5.98379 -3.97733 3.33877 3.40116 3.43514 3.95546 4.46604 4.83110 4.96654 5.16732 5.20335 5.33788 5.40776 5.69140 5.70656 5.74849 5.94758 6.00050 6.00777 6.06245 6.09642 6.17839 6.22492 6.27742 6.35018 6.48790 6.52174 6.58863 6.68930 6.73874 6.81420 6.93037 6.94862 7.16641 7.55632 7.68324 7.89621 8.21562 8.46280 8.71636 9.08193 9.65503 11.11322 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048311 B = 0.006852 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.440601 B = 4085.330325 C = 4266.021682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.204 3.796 3 H 0.054 0.946 4 C -0.500 4.500 5 H 0.061 0.939 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.891 3.109 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.527 5.527 13 C 0.024 3.976 14 C 0.107 3.893 15 H 0.036 0.964 16 C -0.142 4.142 17 C -0.117 4.117 18 H 0.100 0.900 19 C -0.175 4.175 20 C -0.140 4.140 21 C -0.110 4.110 22 C -0.112 4.112 23 H 0.029 0.971 24 H 0.010 0.990 25 H 0.070 0.930 26 H 0.259 0.741 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.008 0.992 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -2.450 13.306 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.098 3.902 3 H 0.071 0.929 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.250 5.250 13 C -0.125 4.125 14 C -0.001 4.001 15 H 0.054 0.946 16 C -0.199 4.199 17 C -0.136 4.136 18 H 0.118 0.882 19 C -0.212 4.212 20 C -0.140 4.140 21 C -0.167 4.167 22 C -0.169 4.169 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.026 0.974 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.006 -2.319 13.127 13.330 hybrid contribution -0.735 -0.499 -0.948 1.299 sum -0.729 -2.818 12.179 12.522 Atomic orbital electron populations 1.22353 1.01589 0.98715 0.99874 1.19411 0.89041 0.95691 0.86029 0.92852 1.21132 1.34550 1.08219 0.89937 0.92040 1.24911 0.95585 0.94751 0.98899 1.69948 1.44825 1.14966 1.23585 0.86619 0.78740 0.79927 0.82758 1.20811 1.21412 1.19946 1.62301 1.59463 1.01563 1.01709 1.22579 0.95901 0.91829 1.02150 1.21102 0.95746 0.93593 0.89679 0.94588 1.21852 1.02652 0.94945 1.00444 1.22443 0.99363 0.98096 0.93701 0.88165 1.23461 1.03417 0.91480 1.02865 1.21638 0.95566 1.04350 0.92464 1.21310 0.99315 1.01362 0.94734 1.21313 0.92929 1.01538 1.01084 0.95210 0.97060 0.91154 0.93083 0.90968 0.92441 0.97389 0.92033 0.91887 0.93658 0.88142 0.89496 0.92531 0.92662 0.92772 0.92632 0.92798 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.26 37.15 0.31 -3.70 16 2 C 0.20 5.13 1.70 -68.87 -0.12 5.01 16 3 H 0.05 1.47 5.98 -51.93 -0.31 1.16 16 4 C -0.50 -13.78 7.84 -34.44 -0.27 -14.04 16 5 H 0.06 1.70 6.63 -52.48 -0.35 1.36 16 6 C 0.06 1.66 5.22 -17.82 -0.09 1.57 16 7 N -0.89 -25.77 12.06 55.43 0.67 -25.10 16 8 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.53 -11.39 4.61 -228.30 -1.05 -12.44 16 13 C 0.02 0.47 7.33 60.06 0.44 0.91 16 14 C 0.11 1.97 1.51 -67.71 -0.10 1.87 16 15 H 0.04 0.68 5.00 -51.93 -0.26 0.42 16 16 C -0.14 -2.55 8.25 37.16 0.31 -2.25 16 17 C -0.12 -1.83 4.95 -90.62 -0.45 -2.28 16 18 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 19 C -0.18 -2.48 7.63 -26.70 -0.20 -2.68 16 20 C -0.14 -1.83 2.70 -154.47 -0.42 -2.25 16 21 C -0.11 -1.20 9.85 37.16 0.37 -0.84 16 22 C -0.11 -1.41 8.40 37.16 0.31 -1.10 16 23 H 0.03 0.69 6.53 -51.93 -0.34 0.35 16 24 H 0.01 0.23 6.61 -51.93 -0.34 -0.11 16 25 H 0.07 1.86 6.77 -51.93 -0.35 1.51 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.07 1.56 6.16 -51.93 -0.32 1.24 16 28 H 0.06 1.01 4.91 -51.93 -0.25 0.75 16 29 H 0.01 0.15 6.73 -51.93 -0.35 -0.20 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.25 6.27 -51.93 -0.33 0.92 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.49 5.71 -51.93 -0.30 1.19 16 34 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.54 7.88 -51.93 -0.41 0.13 16 37 H 0.05 0.56 7.90 -51.93 -0.41 0.15 16 38 H 0.05 0.75 7.52 -51.93 -0.39 0.36 16 39 H 0.05 0.58 7.86 -51.93 -0.41 0.17 16 40 H 0.06 0.77 7.89 -51.93 -0.41 0.36 16 LS Contribution 296.45 15.07 4.47 4.47 Total: -1.00 -28.15 296.45 -7.63 -35.78 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.77 Total: 0.58 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 0.08 Total: -19.79 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.38 Total: -37.54 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.15 -7.63 -35.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.751 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds