Wall clock time and date at job start Mon Mar 30 2020 02:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47380 * 2 1 4 4 C 1.50700 * 109.47278 * 239.99909 * 2 1 3 5 5 H 1.08003 * 119.99975 * 245.31012 * 4 2 1 6 6 C 1.37873 * 119.99821 * 65.31992 * 4 2 1 7 7 N 1.31510 * 120.00508 * 7.64216 * 6 4 2 8 8 Si 1.86800 * 119.99863 * 187.64286 * 6 4 2 9 9 H 1.48503 * 109.46912 * 84.98829 * 8 6 4 10 10 H 1.48498 * 109.47364 * 204.98741 * 8 6 4 11 11 H 1.48503 * 109.47253 * 324.99092 * 8 6 4 12 12 N 1.46903 * 109.47128 * 119.99717 * 2 1 3 13 13 C 1.46900 * 110.99681 * 58.95933 * 12 2 1 14 14 C 1.46897 * 111.00203 * 295.00204 * 12 2 1 15 15 H 1.09000 * 109.46898 * 72.08143 * 14 12 2 16 16 C 1.52999 * 109.47177 * 312.08456 * 14 12 2 17 17 C 1.53003 * 109.47292 * 192.08239 * 14 12 2 18 18 H 1.09002 * 115.54917 * 78.99588 * 17 14 12 19 19 C 1.52999 * 117.49622 * 293.33206 * 17 14 12 20 20 C 1.52994 * 117.50096 * 224.67249 * 17 14 12 21 21 C 1.53000 * 117.50233 * 214.98020 * 20 17 14 22 22 C 1.53003 * 117.49593 * 359.97438 * 20 17 14 23 23 H 1.09006 * 109.46901 * 181.99273 * 1 2 3 24 24 H 1.09001 * 109.47315 * 301.98371 * 1 2 3 25 25 H 1.08994 * 109.47054 * 61.99061 * 1 2 3 26 26 H 0.96994 * 120.00442 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.47215 * 48.93431 * 13 12 2 28 28 H 1.09004 * 109.46924 * 168.93621 * 13 12 2 29 29 H 1.08997 * 109.47066 * 288.93092 * 13 12 2 30 30 H 1.09001 * 109.46937 * 306.77424 * 16 14 12 31 31 H 1.09000 * 109.47444 * 66.77054 * 16 14 12 32 32 H 1.08998 * 109.47077 * 186.77680 * 16 14 12 33 33 H 1.09000 * 117.49999 * 0.02562 * 19 17 14 34 34 H 1.09001 * 117.49514 * 144.99797 * 19 17 14 35 35 H 1.08997 * 109.46980 * 59.99342 * 21 20 17 36 36 H 1.08995 * 109.47615 * 179.97438 * 21 20 17 37 37 H 1.09002 * 109.46522 * 299.99895 * 21 20 17 38 38 H 1.08995 * 109.47597 * 64.60707 * 22 20 17 39 39 H 1.09004 * 109.47155 * 184.60412 * 22 20 17 40 40 H 1.08997 * 109.47008 * 304.60264 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5807 -1.6358 -1.1336 6 6 1.7921 -0.1789 -2.4797 7 7 1.2592 1.0180 -2.5938 8 14 2.2235 -1.1588 -4.0104 9 1 1.1044 -2.0770 -4.3420 10 1 2.4536 -0.2289 -5.1450 11 1 3.4553 -1.9498 -3.7609 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0392 2.4181 15 1 0.5778 -0.0654 2.5928 16 6 1.9957 1.5198 2.2496 17 6 2.4182 -0.5326 3.6105 18 1 3.4532 -0.2034 3.7035 19 6 2.0903 -1.9632 4.0426 20 6 1.6370 -0.7806 4.9023 21 6 2.3682 -0.5482 6.2260 22 6 0.1459 -0.4374 4.9030 23 1 -0.3633 -1.0271 0.0357 24 1 -0.3634 0.5443 0.8717 25 1 -0.3633 0.4826 -0.9072 26 1 1.0898 1.3918 -3.4726 27 1 1.7050 -2.5569 0.2838 28 1 2.0557 -2.6228 2.0277 29 1 0.4598 -2.0752 1.4609 30 1 3.0410 1.6168 1.9563 31 1 1.3602 1.9566 1.4793 32 1 1.8332 2.0406 3.1932 33 1 1.3267 -2.4972 3.4771 34 1 2.9096 -2.5752 4.4200 35 1 2.6961 0.4897 6.2825 36 1 1.6944 -0.7617 7.0557 37 1 3.2350 -1.2067 6.2826 38 1 -0.3763 -1.0848 4.1986 39 1 -0.2607 -0.5863 5.9034 40 1 0.0125 0.6033 4.6078 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397596471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:56 Heat of formation + Delta-G solvation = 8.908414 kcal Electronic energy + Delta-G solvation = -16736.046369 eV Core-core repulsion = 14358.008034 eV Total energy + Delta-G solvation = -2378.038336 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.59029 -38.00894 -34.70875 -32.16240 -30.90945 -29.54923 -28.36937 -27.23282 -25.97674 -24.48640 -22.17569 -20.46656 -19.35060 -18.18939 -16.98940 -16.43647 -15.94792 -15.66139 -15.01069 -14.77663 -14.67287 -14.22956 -13.82441 -13.45425 -13.25720 -13.06129 -12.95369 -12.89326 -12.80478 -12.63748 -12.51115 -12.34994 -12.30787 -12.20384 -11.82963 -11.71710 -11.26503 -10.95391 -10.63551 -10.38690 -10.16962 -8.73473 -8.11357 -6.17468 1.42053 1.42382 1.52347 2.43670 2.80100 3.19887 3.53293 3.80880 3.98429 4.05504 4.25574 4.34009 4.43709 4.63392 4.69269 4.71374 4.82068 4.82425 4.83840 4.87457 4.95272 4.97781 5.09447 5.10717 5.13500 5.14263 5.22320 5.27726 5.30816 5.33284 5.47451 5.54909 5.58226 5.73637 5.76996 6.23267 6.58780 6.87071 6.97599 7.50169 8.97655 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048311 B = 0.006852 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.440601 B = 4085.330325 C = 4266.021682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.210 3.790 3 H 0.024 0.976 4 C -0.515 4.515 5 H 0.055 0.945 6 C 0.012 3.988 7 N -0.922 5.922 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.538 5.538 13 C 0.030 3.970 14 C 0.110 3.890 15 H 0.033 0.967 16 C -0.136 4.136 17 C -0.136 4.136 18 H 0.098 0.902 19 C -0.176 4.176 20 C -0.120 4.120 21 C -0.109 4.109 22 C -0.114 4.114 23 H 0.032 0.968 24 H 0.026 0.974 25 H 0.042 0.958 26 H 0.260 0.740 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.010 0.990 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.309 -3.424 14.957 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.103 3.897 3 H 0.042 0.958 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.262 5.262 13 C -0.118 4.118 14 C 0.002 3.998 15 H 0.051 0.949 16 C -0.193 4.193 17 C -0.155 4.155 18 H 0.116 0.884 19 C -0.212 4.212 20 C -0.120 4.120 21 C -0.166 4.166 22 C -0.171 4.171 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.161 -3.302 14.795 15.160 hybrid contribution -0.785 -0.178 -1.396 1.612 sum -0.624 -3.480 13.399 13.857 Atomic orbital electron populations 1.22145 1.01091 0.98626 0.99112 1.19139 0.89239 0.94217 0.87098 0.95822 1.21431 1.34539 1.08126 0.91296 0.92670 1.25661 0.95605 0.95585 1.01769 1.70067 1.45748 1.16245 1.24186 0.85634 0.78647 0.78582 0.79156 1.20145 1.21083 1.19479 1.62240 1.59765 1.02345 1.01860 1.22555 0.96359 0.90982 1.01862 1.21133 0.96018 0.93389 0.89291 0.94889 1.21787 1.01209 0.95282 1.01022 1.22287 0.99361 0.99705 0.94161 0.88368 1.23496 1.03692 0.91036 1.03010 1.21762 0.95653 1.02303 0.92314 1.21342 0.99692 1.01866 0.93701 1.21356 0.92616 1.00971 1.02194 0.94942 0.95491 0.93928 0.93079 0.93118 0.89790 0.97176 0.93239 0.94423 0.90765 0.88893 0.87995 0.92092 0.90956 0.92143 0.93745 0.90494 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.37 8.26 71.98 0.59 -6.78 16 2 C 0.21 10.78 1.70 44.17 0.08 10.86 16 3 H 0.02 1.36 5.98 -2.39 -0.01 1.35 16 4 C -0.52 -28.89 7.84 25.60 0.20 -28.69 16 5 H 0.06 3.10 6.63 -2.91 -0.02 3.08 16 6 C 0.01 0.69 5.22 84.65 0.44 1.13 16 7 N -0.92 -54.26 12.06 21.45 0.26 -54.01 16 8 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.54 -23.34 4.61 -876.19 -4.04 -27.37 16 13 C 0.03 1.19 7.33 127.69 0.94 2.13 16 14 C 0.11 3.96 1.51 44.92 0.07 4.03 16 15 H 0.03 1.22 5.00 -2.39 -0.01 1.21 16 16 C -0.14 -4.90 8.25 71.98 0.59 -4.31 16 17 C -0.14 -4.02 4.95 -10.79 -0.05 -4.07 16 18 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 19 C -0.18 -4.52 7.63 30.62 0.23 -4.29 16 20 C -0.12 -2.80 2.70 -52.16 -0.14 -2.94 16 21 C -0.11 -1.99 9.85 71.98 0.71 -1.28 16 22 C -0.11 -2.60 8.40 71.98 0.60 -1.99 16 23 H 0.03 1.52 6.53 -2.38 -0.02 1.50 16 24 H 0.03 1.19 6.61 -2.39 -0.02 1.17 16 25 H 0.04 2.30 6.77 -2.39 -0.02 2.28 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.05 2.19 6.16 -2.39 -0.01 2.18 16 28 H 0.08 2.83 4.91 -2.38 -0.01 2.82 16 29 H 0.01 0.38 6.73 -2.39 -0.02 0.36 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.52 6.27 -2.39 -0.01 1.51 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.09 2.55 5.71 -2.39 -0.01 2.53 16 34 H 0.10 2.32 8.05 -2.39 -0.02 2.31 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.10 7.88 -2.39 -0.02 1.08 16 37 H 0.06 1.04 7.90 -2.39 -0.02 1.02 16 38 H 0.04 1.10 7.52 -2.39 -0.02 1.08 16 39 H 0.08 1.39 7.86 -2.39 -0.02 1.37 16 40 H 0.05 1.29 7.89 -2.39 -0.02 1.28 16 Total: -1.00 -60.39 296.45 3.51 -56.88 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.00 Total: 14.17 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 4.26 Total: -36.20 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -3.78 Total: -81.38 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -60.39 3.51 -56.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.789 kcal (2) G-P(sol) polarization free energy of solvation -60.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds