Wall clock time and date at job start Mon Mar 30 2020 02:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47257 * 239.99841 * 2 1 3 5 5 H 1.07994 * 120.00427 * 243.55949 * 4 2 1 6 6 C 1.37878 * 119.99768 * 63.83334 * 4 2 1 7 7 N 1.31519 * 119.99739 * 197.32319 * 6 4 2 8 8 Si 1.86799 * 120.00430 * 17.32457 * 6 4 2 9 9 H 1.48500 * 109.47035 * 94.68506 * 8 6 4 10 10 H 1.48497 * 109.47200 * 214.68997 * 8 6 4 11 11 H 1.48503 * 109.46753 * 334.68614 * 8 6 4 12 12 N 1.46894 * 109.47055 * 119.99995 * 2 1 3 13 13 C 1.46899 * 111.00517 * 64.37284 * 12 2 1 14 14 C 1.46900 * 111.00085 * 188.32976 * 12 2 1 15 15 H 1.09002 * 109.47096 * 308.18130 * 14 12 2 16 16 C 1.53000 * 109.47500 * 68.17943 * 14 12 2 17 17 C 1.52998 * 109.47362 * 188.18078 * 14 12 2 18 18 H 1.09002 * 115.55207 * 318.83457 * 17 14 12 19 19 C 1.53004 * 117.49803 * 104.54127 * 17 14 12 20 20 C 1.52995 * 59.99981 * 107.48960 * 19 17 14 21 21 C 1.52999 * 117.50095 * 252.50744 * 20 19 17 22 22 C 1.53003 * 117.50058 * 107.48878 * 20 19 17 23 23 H 1.09004 * 109.47053 * 175.19164 * 1 2 3 24 24 H 1.08996 * 109.47452 * 295.19132 * 1 2 3 25 25 H 1.09004 * 109.47491 * 55.19261 * 1 2 3 26 26 H 0.97004 * 119.99835 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46666 * 59.99845 * 13 12 2 28 28 H 1.08994 * 109.47144 * 179.97438 * 13 12 2 29 29 H 1.08999 * 109.46920 * 300.00568 * 13 12 2 30 30 H 1.09005 * 109.46941 * 62.01070 * 16 14 12 31 31 H 1.09000 * 109.47488 * 182.01381 * 16 14 12 32 32 H 1.09005 * 109.46989 * 302.01824 * 16 14 12 33 33 H 1.09001 * 117.49365 * 214.98374 * 19 17 14 34 34 H 1.09001 * 117.49949 * 359.97438 * 19 17 14 35 35 H 1.08996 * 109.47359 * 136.05188 * 21 20 19 36 36 H 1.09001 * 109.47256 * 256.05607 * 21 20 19 37 37 H 1.09006 * 109.46807 * 16.05668 * 21 20 19 38 38 H 1.09002 * 109.46681 * 351.37740 * 22 20 19 39 39 H 1.09001 * 109.47129 * 111.37622 * 22 20 19 40 40 H 1.08998 * 109.47553 * 231.37705 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6050 -1.6208 -1.1324 6 6 1.7657 -0.1951 -2.4811 7 7 1.8915 -0.9561 -3.5464 8 14 1.2258 1.5840 -2.6627 9 1 2.4098 2.4340 -2.9469 10 1 0.2563 1.6953 -3.7820 11 1 0.5821 2.0368 -1.4034 12 7 2.0196 -0.6925 1.1994 13 6 1.6359 -2.1104 1.1823 14 6 3.4744 -0.5424 1.3369 15 1 3.9593 -0.8323 0.4047 16 6 3.8091 0.9166 1.6535 17 6 3.9746 -1.4382 2.4719 18 1 3.3465 -1.4635 3.3624 19 6 4.7060 -2.7255 2.0860 20 6 5.4876 -1.5476 2.6712 21 6 6.3847 -0.7528 1.7202 22 6 6.0032 -1.6845 4.1052 23 1 -0.3633 -1.0241 -0.0861 24 1 -0.3634 0.4374 0.9299 25 1 -0.3634 0.5866 -0.8438 26 1 1.7042 -0.5934 -4.4264 27 1 2.0626 -2.5916 0.3022 28 1 2.0114 -2.5992 2.0812 29 1 0.5495 -2.1924 1.1504 30 1 3.3537 1.1959 2.6036 31 1 4.8906 1.0351 1.7201 32 1 3.4213 1.5582 0.8622 33 1 4.5590 -3.5980 2.7226 34 1 4.8305 -2.9344 1.0234 35 1 6.2535 0.3137 1.9032 36 1 7.4263 -1.0253 1.8905 37 1 6.1134 -0.9805 0.6893 38 1 5.5874 -2.5855 4.5563 39 1 7.0911 -1.7520 4.0953 40 1 5.6985 -0.8137 4.6856 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397596473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:58 Heat of formation + Delta-G solvation = 26.619032 kcal Electronic energy + Delta-G solvation = -16848.906364 eV Core-core repulsion = 14471.636018 eV Total energy + Delta-G solvation = -2377.270346 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.13410 -36.51774 -32.62334 -30.92555 -29.46972 -28.58803 -27.21744 -25.14583 -24.21637 -22.91399 -20.36463 -18.98257 -18.18717 -16.65075 -15.60530 -14.69106 -14.42735 -13.99900 -13.61948 -13.39902 -13.17228 -12.62309 -12.51171 -12.29274 -11.99960 -11.92556 -11.64244 -11.51598 -11.18148 -11.02665 -10.84882 -10.84268 -10.51432 -10.39723 -10.06900 -9.90738 -9.54443 -9.37267 -9.24705 -9.05104 -8.42610 -7.03177 -6.12370 -4.05532 3.27499 3.37597 3.40992 4.02434 4.42167 4.79348 5.01889 5.15822 5.21121 5.24484 5.35366 5.73309 5.75424 5.87794 5.97482 6.04743 6.09184 6.13540 6.17584 6.21533 6.22513 6.28610 6.46619 6.52689 6.58345 6.61631 6.65259 6.72793 6.78898 6.83221 6.93798 7.03951 7.25173 7.34348 7.66008 8.22455 8.28439 8.49608 8.95394 9.56354 11.00660 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033922 B = 0.008302 C = 0.008028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.218541 B = 3371.810052 C = 3486.884559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.175 3.825 3 H 0.036 0.964 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.861 3.139 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.252 1.252 12 N -0.529 5.529 13 C 0.033 3.967 14 C 0.116 3.884 15 H 0.055 0.945 16 C -0.145 4.145 17 C -0.123 4.123 18 H 0.101 0.899 19 C -0.175 4.175 20 C -0.132 4.132 21 C -0.120 4.120 22 C -0.110 4.110 23 H 0.047 0.953 24 H 0.030 0.970 25 H 0.043 0.957 26 H 0.262 0.738 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.385 0.367 11.811 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.068 3.932 3 H 0.053 0.947 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.688 3.312 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.176 1.176 12 N -0.253 5.253 13 C -0.115 4.115 14 C 0.007 3.993 15 H 0.073 0.927 16 C -0.202 4.202 17 C -0.142 4.142 18 H 0.119 0.881 19 C -0.212 4.212 20 C -0.133 4.133 21 C -0.176 4.176 22 C -0.167 4.167 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.134 0.577 12.018 13.081 hybrid contribution 0.018 0.418 -1.148 1.222 sum 5.152 0.995 10.870 12.070 Atomic orbital electron populations 1.22101 0.98291 1.00465 0.98573 1.19637 0.91751 0.94660 0.87192 0.94676 1.21542 1.35781 1.11249 0.89912 0.90777 1.24914 0.94350 0.97238 0.95869 1.70028 1.48833 1.35229 0.98728 0.87214 0.78734 0.86856 0.78435 1.20800 1.21420 1.17589 1.62475 1.10613 1.12188 1.40044 1.22202 1.00107 0.89752 0.99462 1.21002 0.89472 0.93749 0.95093 0.92726 1.21962 1.00455 0.96383 1.01391 1.22472 0.92572 0.98425 1.00719 0.88055 1.23278 1.04600 0.91952 1.01328 1.21543 0.93571 1.01937 0.96225 1.21518 0.97718 0.99771 0.98630 1.21297 1.00372 1.01265 0.93778 0.93434 0.95112 0.93780 0.92825 0.94515 0.93537 0.92784 0.93053 0.92397 0.92561 0.89556 0.88920 0.91538 0.93021 0.92008 0.92870 0.92631 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.36 37.16 0.31 -2.75 16 2 C 0.18 4.14 1.75 -68.87 -0.12 4.02 16 3 H 0.04 0.86 4.79 -51.93 -0.25 0.61 16 4 C -0.55 -14.94 7.39 -34.44 -0.25 -15.19 16 5 H 0.07 2.22 6.11 -52.49 -0.32 1.90 16 6 C 0.08 2.25 5.34 -17.82 -0.10 2.16 16 7 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 8 Si 0.86 21.16 25.91 -169.99 -4.40 16.76 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.25 -5.87 5.42 56.52 0.31 -5.56 16 12 N -0.53 -11.04 4.59 -228.31 -1.05 -12.08 16 13 C 0.03 0.67 8.42 60.06 0.51 1.17 16 14 C 0.12 2.18 1.57 -67.71 -0.11 2.07 16 15 H 0.05 1.20 6.03 -51.93 -0.31 0.89 16 16 C -0.14 -2.51 9.04 37.16 0.34 -2.17 16 17 C -0.12 -1.95 3.22 -90.62 -0.29 -2.24 16 18 H 0.10 1.60 7.97 -51.93 -0.41 1.18 16 19 C -0.17 -2.59 9.00 -26.73 -0.24 -2.83 16 20 C -0.13 -1.80 2.63 -154.51 -0.41 -2.21 16 21 C -0.12 -1.61 8.41 37.16 0.31 -1.30 16 22 C -0.11 -1.24 9.85 37.16 0.37 -0.87 16 23 H 0.05 1.06 6.75 -51.93 -0.35 0.71 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 1.00 4.93 -51.93 -0.26 0.75 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.04 0.82 6.15 -51.93 -0.32 0.50 16 28 H 0.05 0.81 6.26 -51.93 -0.32 0.49 16 29 H 0.05 1.07 6.52 -51.93 -0.34 0.73 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.88 4.75 -51.93 -0.25 0.63 16 32 H 0.06 1.06 6.39 -51.93 -0.33 0.73 16 33 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 34 H 0.09 1.52 8.05 -51.93 -0.42 1.11 16 35 H 0.07 0.87 5.56 -51.93 -0.29 0.58 16 36 H 0.05 0.61 8.05 -51.93 -0.42 0.19 16 37 H 0.06 0.94 7.25 -51.93 -0.38 0.56 16 38 H 0.05 0.57 7.90 -51.93 -0.41 0.16 16 39 H 0.05 0.56 8.01 -51.93 -0.42 0.14 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 291.33 15.07 4.39 4.39 Total: -1.00 -28.80 291.33 -6.68 -35.49 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.71 Total: 1.76 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 0.31 Total: -20.15 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.27 Total: -38.24 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.40 Total: 16.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.80 -6.68 -35.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.105 kcal (2) G-P(sol) polarization free energy of solvation -28.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds