Wall clock time and date at job start Mon Mar 30 2020 02:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47377 * 2 1 4 4 C 1.52998 * 109.47300 * 120.00372 * 2 1 3 5 5 C 1.53004 * 109.47186 * 64.55010 * 4 2 1 6 6 H 1.09003 * 109.46714 * 306.69117 * 5 4 2 7 7 C 1.52994 * 109.47233 * 66.69353 * 5 4 2 8 8 N 1.46898 * 109.47021 * 186.69439 * 5 4 2 9 9 C 1.47908 * 111.00072 * 67.71212 * 8 5 4 10 10 C 1.53991 * 107.05758 * 214.15493 * 9 8 5 11 11 C 1.54598 * 105.14043 * 1.22713 * 10 9 8 12 12 H 1.09001 * 110.72228 * 263.59454 * 11 10 9 13 13 C 1.50699 * 110.72447 * 140.49327 * 11 10 9 14 14 H 1.07993 * 120.00175 * 274.49783 * 13 11 10 15 15 C 1.37875 * 119.99973 * 94.49946 * 13 11 10 16 16 N 1.31517 * 120.00189 * 183.92509 * 15 13 11 17 17 Si 1.86801 * 120.00097 * 3.92438 * 15 13 11 18 18 H 1.48504 * 109.47051 * 93.57208 * 17 15 13 19 19 H 1.48504 * 109.47307 * 213.56977 * 17 15 13 20 20 H 1.48501 * 109.46988 * 333.57161 * 17 15 13 21 21 C 1.48534 * 111.00119 * 310.31788 * 8 5 4 22 22 H 1.09005 * 109.47240 * 174.01901 * 1 2 3 23 23 H 1.09004 * 109.46409 * 294.01365 * 1 2 3 24 24 H 1.08995 * 109.47546 * 54.01416 * 1 2 3 25 25 H 1.09005 * 109.46992 * 240.00071 * 2 1 3 26 26 H 1.08993 * 109.47161 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.46928 * 300.00474 * 3 2 1 28 28 H 1.09001 * 109.46536 * 60.00100 * 3 2 1 29 29 H 1.08992 * 109.47140 * 304.54680 * 4 2 1 30 30 H 1.09002 * 109.47250 * 184.54508 * 4 2 1 31 31 H 1.09007 * 109.47402 * 180.02562 * 7 5 4 32 32 H 1.09003 * 109.47463 * 60.00223 * 7 5 4 33 33 H 1.09003 * 109.46951 * 299.99859 * 7 5 4 34 34 H 1.08996 * 109.91640 * 333.51125 * 9 8 5 35 35 H 1.08999 * 109.91445 * 94.80669 * 9 8 5 36 36 H 1.08996 * 110.31117 * 120.14230 * 10 9 8 37 37 H 1.08997 * 110.30903 * 242.21421 * 10 9 8 38 38 H 0.96996 * 120.00120 * 179.97438 * 16 15 13 39 39 H 1.09004 * 110.66713 * 278.15439 * 21 8 5 40 40 H 1.08999 * 110.67005 * 41.28590 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6256 -2.1931 1.1932 6 1 0.5498 -2.2617 1.0321 7 6 2.3588 -2.8860 0.0429 8 7 1.9737 -2.8483 2.4610 9 6 1.1464 -2.3280 3.5712 10 6 2.0297 -2.3308 4.8326 11 6 3.4065 -2.8517 4.3602 12 1 3.4999 -3.9211 4.5495 13 6 4.5225 -2.0939 5.0320 14 1 4.8696 -1.1607 4.6139 15 6 5.1003 -2.5920 6.1805 16 7 6.0204 -1.8941 6.8097 17 14 4.5764 -4.2583 6.8427 18 1 5.4860 -5.3080 6.3175 19 1 4.6413 -4.2440 8.3263 20 1 3.1853 -4.5474 6.4109 21 6 3.3820 -2.5643 2.8380 22 1 -0.3634 -1.0221 -0.1071 23 1 -0.3632 0.4182 0.9388 24 1 -0.3634 0.6038 -0.8315 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6118 -0.2568 2.1373 30 1 3.1270 -0.6513 1.2908 31 1 2.0633 -3.9344 0.0028 32 1 3.4347 -2.8174 0.2040 33 1 2.1005 -2.3998 -0.8978 34 1 0.8215 -1.3119 3.3476 35 1 0.2806 -2.9726 3.7228 36 1 2.1238 -1.3206 5.2309 37 1 1.6101 -2.9966 5.5868 38 1 6.4267 -2.2444 7.6179 39 1 4.0637 -3.2309 2.3097 40 1 3.6307 -1.5218 2.6394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397610092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:28 Heat of formation + Delta-G solvation = -18.395718 kcal Electronic energy + Delta-G solvation = -16525.498595 eV Core-core repulsion = 14146.276263 eV Total energy + Delta-G solvation = -2379.222332 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.17483 -36.22280 -33.29259 -31.88981 -29.09080 -27.88108 -27.12437 -26.46495 -24.52514 -21.63438 -20.42821 -19.51950 -18.48604 -16.98828 -15.57066 -15.35817 -14.79329 -14.10999 -13.88612 -13.51229 -13.38391 -12.87085 -12.57266 -12.42193 -12.20286 -12.02190 -11.88761 -11.48316 -11.29199 -11.12266 -10.95686 -10.71825 -10.48623 -10.36225 -10.27836 -10.10872 -10.07370 -9.62163 -9.46214 -8.93913 -8.50130 -7.69171 -6.06427 -4.04988 3.31552 3.40118 3.44869 4.45067 4.58535 4.87620 4.92519 5.04130 5.22014 5.33052 5.47587 5.60168 5.64367 5.65286 5.72543 5.75729 5.83993 5.94634 6.01162 6.04438 6.06813 6.12560 6.16612 6.26407 6.29203 6.38420 6.43199 6.54828 6.59458 6.75067 6.88760 6.91651 7.18921 7.42988 7.53333 7.76173 7.86379 8.55661 8.97796 9.57418 11.06629 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038115 B = 0.006968 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.437157 B = 4017.605972 C = 4249.998290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.150 4.150 5 C 0.071 3.929 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.519 5.519 9 C 0.035 3.965 10 C -0.131 4.131 11 C 0.015 3.985 12 H 0.041 0.959 13 C -0.507 4.507 14 H 0.071 0.929 15 C 0.070 3.930 16 N -0.902 5.902 17 Si 0.877 3.123 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.261 1.261 21 C 0.041 3.959 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.263 0.737 39 H 0.065 0.935 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 1.603 -12.348 16.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.189 4.189 5 C -0.038 4.038 6 H 0.092 0.908 7 C -0.198 4.198 8 N -0.243 5.243 9 C -0.093 4.093 10 C -0.170 4.170 11 C -0.004 4.004 12 H 0.059 0.941 13 C -0.545 4.545 14 H 0.089 0.911 15 C -0.131 4.131 16 N -0.540 5.540 17 Si 0.705 3.295 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.185 1.185 21 C -0.086 4.086 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.030 1.033 -12.263 15.876 hybrid contribution -0.076 0.096 0.615 0.627 sum -10.106 1.129 -11.648 15.462 Atomic orbital electron populations 1.21884 0.95667 1.01514 1.01368 1.21120 0.95538 0.95974 0.98695 1.21845 1.01093 0.96223 1.01294 1.22382 1.01974 0.96821 0.97685 1.21818 0.99447 0.91113 0.91418 0.90836 1.21800 1.00763 1.00488 0.96705 1.64989 1.05043 1.53058 1.01170 1.22849 0.96767 0.97249 0.92397 1.22770 0.97515 1.01430 0.95292 1.20044 0.92766 0.96791 0.90820 0.94089 1.20970 1.16231 1.08179 1.09127 0.91060 1.25060 0.94504 0.97243 0.96312 1.69916 1.27493 1.37941 1.18638 0.86830 0.79947 0.84911 0.77823 1.20372 1.21620 1.18527 1.23374 0.87674 0.99255 0.98264 0.92572 0.92876 0.93178 0.91167 0.92692 0.93151 0.92818 0.91653 0.91002 0.92394 0.92556 0.92823 0.94505 0.92132 0.91748 0.93265 0.92726 0.91664 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.80 37.16 0.33 -1.21 16 2 C -0.09 -1.09 2.80 -90.62 -0.25 -1.34 16 3 C -0.15 -1.62 9.19 37.16 0.34 -1.28 16 4 C -0.15 -2.13 3.17 -26.73 -0.08 -2.22 16 5 C 0.07 1.05 2.23 -67.71 -0.15 0.90 16 6 H 0.07 1.03 6.35 -51.93 -0.33 0.70 16 7 C -0.14 -1.86 9.04 37.15 0.34 -1.53 16 8 N -0.52 -9.40 5.24 -222.50 -1.17 -10.57 16 9 C 0.04 0.64 6.44 -2.75 -0.02 0.62 16 10 C -0.13 -2.81 6.50 -25.37 -0.16 -2.97 16 11 C 0.02 0.37 2.46 -89.91 -0.22 0.15 16 12 H 0.04 1.01 5.47 -51.93 -0.28 0.73 16 13 C -0.51 -14.15 8.83 -34.44 -0.30 -14.45 16 14 H 0.07 2.16 8.02 -52.49 -0.42 1.74 16 15 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 17 Si 0.88 21.74 27.24 -169.99 -4.63 17.11 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.26 -6.23 6.37 56.52 0.36 -5.87 16 21 C 0.04 0.85 4.99 -1.90 -0.01 0.84 16 22 H 0.06 0.58 6.71 -51.93 -0.35 0.23 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.78 6.43 -51.93 -0.33 0.44 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.02 6.25 -51.93 -0.32 0.69 16 30 H 0.07 1.13 6.34 -51.93 -0.33 0.80 16 31 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.06 0.80 7.27 -51.93 -0.38 0.42 16 33 H 0.05 0.60 6.53 -51.93 -0.34 0.26 16 34 H 0.04 0.62 5.97 -51.93 -0.31 0.31 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.42 7.84 -51.93 -0.41 1.02 16 37 H 0.05 1.04 7.99 -51.93 -0.41 0.62 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.06 1.33 7.76 -51.93 -0.40 0.92 16 40 H 0.05 1.02 5.33 -51.93 -0.28 0.74 16 LS Contribution 296.53 15.07 4.47 4.47 Total: -1.00 -29.07 296.53 -7.89 -36.97 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -7.04 Total: -0.63 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -0.30 Total: -20.57 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.39 Total: -37.35 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.63 Total: 17.11 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.07 -7.89 -36.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397610092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.570 kcal (2) G-P(sol) polarization free energy of solvation -29.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds