Wall clock time and date at job start Mon Mar 30 2020 02:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47377 * 2 1 4 4 C 1.52998 * 109.47300 * 120.00372 * 2 1 3 5 5 C 1.53004 * 109.47186 * 64.55010 * 4 2 1 6 6 H 1.09003 * 109.46714 * 306.69117 * 5 4 2 7 7 C 1.52994 * 109.47233 * 66.69353 * 5 4 2 8 8 N 1.46898 * 109.47021 * 186.69439 * 5 4 2 9 9 C 1.47908 * 111.00072 * 67.71212 * 8 5 4 10 10 C 1.53991 * 107.05758 * 214.15493 * 9 8 5 11 11 C 1.54598 * 105.14043 * 1.22713 * 10 9 8 12 12 H 1.09001 * 110.72228 * 263.59454 * 11 10 9 13 13 C 1.50699 * 110.72447 * 140.49327 * 11 10 9 14 14 H 1.07993 * 120.00175 * 274.49783 * 13 11 10 15 15 C 1.37875 * 119.99973 * 94.49946 * 13 11 10 16 16 N 1.31517 * 120.00189 * 183.92509 * 15 13 11 17 17 Si 1.86801 * 120.00097 * 3.92438 * 15 13 11 18 18 H 1.48504 * 109.47051 * 93.57208 * 17 15 13 19 19 H 1.48504 * 109.47307 * 213.56977 * 17 15 13 20 20 H 1.48501 * 109.46988 * 333.57161 * 17 15 13 21 21 C 1.48534 * 111.00119 * 310.31788 * 8 5 4 22 22 H 1.09005 * 109.47240 * 174.01901 * 1 2 3 23 23 H 1.09004 * 109.46409 * 294.01365 * 1 2 3 24 24 H 1.08995 * 109.47546 * 54.01416 * 1 2 3 25 25 H 1.09005 * 109.46992 * 240.00071 * 2 1 3 26 26 H 1.08993 * 109.47161 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.46928 * 300.00474 * 3 2 1 28 28 H 1.09001 * 109.46536 * 60.00100 * 3 2 1 29 29 H 1.08992 * 109.47140 * 304.54680 * 4 2 1 30 30 H 1.09002 * 109.47250 * 184.54508 * 4 2 1 31 31 H 1.09007 * 109.47402 * 180.02562 * 7 5 4 32 32 H 1.09003 * 109.47463 * 60.00223 * 7 5 4 33 33 H 1.09003 * 109.46951 * 299.99859 * 7 5 4 34 34 H 1.08996 * 109.91640 * 333.51125 * 9 8 5 35 35 H 1.08999 * 109.91445 * 94.80669 * 9 8 5 36 36 H 1.08996 * 110.31117 * 120.14230 * 10 9 8 37 37 H 1.08997 * 110.30903 * 242.21421 * 10 9 8 38 38 H 0.96996 * 120.00120 * 179.97438 * 16 15 13 39 39 H 1.09004 * 110.66713 * 278.15439 * 21 8 5 40 40 H 1.08999 * 110.67005 * 41.28590 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6256 -2.1931 1.1932 6 1 0.5498 -2.2617 1.0321 7 6 2.3588 -2.8860 0.0429 8 7 1.9737 -2.8483 2.4610 9 6 1.1464 -2.3280 3.5712 10 6 2.0297 -2.3308 4.8326 11 6 3.4065 -2.8517 4.3602 12 1 3.4999 -3.9211 4.5495 13 6 4.5225 -2.0939 5.0320 14 1 4.8696 -1.1607 4.6139 15 6 5.1003 -2.5920 6.1805 16 7 6.0204 -1.8941 6.8097 17 14 4.5764 -4.2583 6.8427 18 1 5.4860 -5.3080 6.3175 19 1 4.6413 -4.2440 8.3263 20 1 3.1853 -4.5474 6.4109 21 6 3.3820 -2.5643 2.8380 22 1 -0.3634 -1.0221 -0.1071 23 1 -0.3632 0.4182 0.9388 24 1 -0.3634 0.6038 -0.8315 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6118 -0.2568 2.1373 30 1 3.1270 -0.6513 1.2908 31 1 2.0633 -3.9344 0.0028 32 1 3.4347 -2.8174 0.2040 33 1 2.1005 -2.3998 -0.8978 34 1 0.8215 -1.3119 3.3476 35 1 0.2806 -2.9726 3.7228 36 1 2.1238 -1.3206 5.2309 37 1 1.6101 -2.9966 5.5868 38 1 6.4267 -2.2444 7.6179 39 1 4.0637 -3.2309 2.3097 40 1 3.6307 -1.5218 2.6394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397610092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:28 Heat of formation + Delta-G solvation = -36.271488 kcal Electronic energy + Delta-G solvation = -16526.273746 eV Core-core repulsion = 14146.276263 eV Total energy + Delta-G solvation = -2379.997483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57270 -37.48334 -35.03739 -33.58627 -30.77316 -29.38075 -27.99204 -27.56234 -26.45439 -23.07637 -21.58340 -21.29058 -19.78845 -19.08064 -17.09230 -16.51193 -16.29775 -15.83279 -15.21996 -14.84139 -14.68423 -14.48233 -14.08541 -13.66313 -13.49791 -13.24039 -13.09952 -12.93634 -12.82571 -12.35473 -12.32046 -12.06091 -12.01178 -11.82669 -11.70552 -11.50870 -11.41992 -11.28378 -11.21420 -10.87987 -10.68010 -9.13764 -8.29391 -6.32340 1.35369 1.36967 1.49590 2.35906 3.05634 3.21460 3.81462 3.88530 4.05089 4.13115 4.15041 4.34201 4.41850 4.52569 4.54310 4.56783 4.74840 4.79004 4.81892 4.85089 4.94333 4.96855 5.04641 5.08529 5.10763 5.15173 5.17652 5.25114 5.31240 5.39386 5.42497 5.50124 5.54881 5.60921 5.68607 6.06412 6.31379 6.38920 6.73518 7.33048 8.87371 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038115 B = 0.006968 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.437157 B = 4017.605972 C = 4249.998290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.144 4.144 5 C 0.070 3.930 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.521 5.521 9 C 0.042 3.958 10 C -0.129 4.129 11 C 0.007 3.993 12 H 0.038 0.962 13 C -0.509 4.509 14 H 0.029 0.971 15 C 0.011 3.989 16 N -0.951 5.951 17 Si 0.944 3.056 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.243 1.243 21 C 0.053 3.947 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.265 0.735 39 H 0.064 0.936 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.319 0.391 -13.865 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.183 4.183 5 C -0.038 4.038 6 H 0.110 0.890 7 C -0.194 4.194 8 N -0.244 5.244 9 C -0.086 4.086 10 C -0.168 4.168 11 C -0.013 4.013 12 H 0.056 0.944 13 C -0.547 4.547 14 H 0.048 0.952 15 C -0.186 4.186 16 N -0.591 5.591 17 Si 0.768 3.232 18 H -0.196 1.196 19 H -0.213 1.213 20 H -0.167 1.167 21 C -0.075 4.075 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.306 -0.174 -13.804 18.494 hybrid contribution 0.654 0.578 1.033 1.352 sum -11.652 0.404 -12.771 17.293 Atomic orbital electron populations 1.21861 0.94365 1.02179 1.01750 1.21098 0.96536 0.95822 0.97406 1.21850 1.00582 0.96204 1.01874 1.22293 1.00429 0.96972 0.98578 1.21967 1.00670 0.91066 0.90123 0.88988 1.21786 0.99615 1.00806 0.97177 1.65003 1.03192 1.53765 1.02477 1.22814 0.96544 0.98631 0.90578 1.22632 0.96723 1.00300 0.97145 1.20032 0.92569 0.95857 0.92812 0.94381 1.21192 1.17318 1.06996 1.09202 0.95248 1.25934 0.94599 1.01316 0.96702 1.70060 1.29344 1.40154 1.19528 0.85767 0.80457 0.79862 0.77104 1.19553 1.21295 1.16684 1.23110 0.89703 0.98626 0.96055 0.92006 0.93533 0.91555 0.90109 0.93581 0.91228 0.93581 0.93302 0.93284 0.92113 0.94017 0.90308 0.93382 0.89860 0.93514 0.92720 0.92570 0.91715 0.94365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.80 71.98 0.63 -1.93 16 2 C -0.09 -1.86 2.80 -10.79 -0.03 -1.89 16 3 C -0.15 -3.03 9.19 71.98 0.66 -2.37 16 4 C -0.14 -3.93 3.17 30.59 0.10 -3.84 16 5 C 0.07 1.90 2.23 44.91 0.10 2.00 16 6 H 0.09 2.22 6.35 -2.39 -0.02 2.20 16 7 C -0.14 -3.28 9.04 71.98 0.65 -2.63 16 8 N -0.52 -17.85 5.24 -857.86 -4.50 -22.35 16 9 C 0.04 1.42 6.44 86.44 0.56 1.98 16 10 C -0.13 -5.41 6.50 31.47 0.20 -5.21 16 11 C 0.01 0.33 2.46 -10.34 -0.03 0.30 16 12 H 0.04 1.83 5.47 -2.39 -0.01 1.81 16 13 C -0.51 -29.33 8.83 25.60 0.23 -29.11 16 14 H 0.03 1.88 8.02 -2.91 -0.02 1.86 16 15 C 0.01 0.67 5.47 84.65 0.46 1.13 16 16 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 17 Si 0.94 44.94 27.24 68.60 1.87 46.81 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 20 H -0.24 -10.80 6.37 99.48 0.63 -10.17 16 21 C 0.05 2.16 4.99 86.65 0.43 2.59 16 22 H 0.06 1.03 6.71 -2.38 -0.02 1.02 16 23 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.08 1.53 6.43 -2.38 -0.02 1.52 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 1.48 6.25 -2.39 -0.01 1.47 16 30 H 0.05 1.56 6.34 -2.39 -0.02 1.54 16 31 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.04 1.12 7.27 -2.39 -0.02 1.10 16 33 H 0.08 1.50 6.53 -2.39 -0.02 1.48 16 34 H 0.05 1.53 5.97 -2.39 -0.01 1.51 16 35 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.05 2.08 7.84 -2.39 -0.02 2.06 16 37 H 0.05 2.20 7.99 -2.39 -0.02 2.18 16 38 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 39 H 0.06 2.63 7.76 -2.38 -0.02 2.61 16 40 H 0.04 1.64 5.33 -2.39 -0.01 1.63 16 Total: -1.00 -63.66 296.53 2.55 -61.11 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.91 Total: 13.06 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 3.97 Total: -38.99 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -4.20 Total: -81.99 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.87 Total: 46.81 kcal Total: -63.66 2.55 -61.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397610092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.839 kcal (2) G-P(sol) polarization free energy of solvation -63.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds