Wall clock time and date at job start Mon Mar 30 2020 02:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.52995 * 109.46932 * 239.99699 * 2 1 3 5 5 H 1.09004 * 115.55301 * 282.33641 * 4 2 1 6 6 C 1.53006 * 117.51758 * 136.63498 * 4 2 1 7 7 C 1.52996 * 117.50002 * 68.00534 * 4 2 1 8 8 C 1.52999 * 117.50230 * 215.00078 * 7 4 2 9 9 C 1.53001 * 117.50032 * 0.02562 * 7 4 2 10 10 N 1.46905 * 109.46845 * 120.00155 * 2 1 3 11 11 C 1.46897 * 111.00183 * 58.95515 * 10 2 1 12 12 C 1.46892 * 110.99847 * 294.99348 * 10 2 1 13 13 C 1.53001 * 109.47141 * 190.00199 * 12 10 2 14 14 C 1.50706 * 109.47202 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00026 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00112 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99864 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00014 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46783 * 90.00488 * 18 16 14 20 20 H 1.48504 * 109.46932 * 209.99944 * 18 16 14 21 21 H 1.48494 * 109.47040 * 330.00523 * 18 16 14 22 22 H 1.08997 * 109.47479 * 172.11473 * 1 2 3 23 23 H 1.09007 * 109.46825 * 292.11347 * 1 2 3 24 24 H 1.08997 * 109.46810 * 52.10943 * 1 2 3 25 25 H 1.08997 * 117.49938 * 0.02562 * 6 4 2 26 26 H 1.08996 * 117.49641 * 145.03359 * 6 4 2 27 27 H 1.09006 * 109.46932 * 60.00014 * 8 7 4 28 28 H 1.09000 * 109.47035 * 179.97438 * 8 7 4 29 29 H 1.08996 * 109.47105 * 299.99949 * 8 7 4 30 30 H 1.09004 * 109.47207 * 52.89534 * 9 7 4 31 31 H 1.08992 * 109.47852 * 172.89978 * 9 7 4 32 32 H 1.09010 * 109.46552 * 292.90497 * 9 7 4 33 33 H 1.08993 * 109.47650 * 59.99379 * 11 10 2 34 34 H 1.08997 * 109.46735 * 180.02562 * 11 10 2 35 35 H 1.09003 * 109.46605 * 299.99149 * 11 10 2 36 36 H 1.08999 * 109.47421 * 310.00397 * 12 10 2 37 37 H 1.09000 * 109.47057 * 70.00516 * 12 10 2 38 38 H 1.08999 * 109.47125 * 300.00380 * 13 12 10 39 39 H 1.08999 * 109.47393 * 60.00358 * 13 12 10 40 40 H 0.96997 * 120.00230 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.9986 -1.8100 -1.2133 6 6 3.2057 -0.0833 -2.0075 7 6 1.7962 -0.0494 -2.6019 8 6 1.5131 -0.9568 -3.8007 9 6 1.0617 1.2928 -2.6019 10 7 2.0196 -0.6926 1.1995 11 6 1.5283 -2.0761 1.2460 12 6 1.6488 0.0391 2.4180 13 6 2.3789 -0.5663 3.6186 14 6 1.9979 0.1840 4.8688 15 1 1.3041 1.0097 4.8128 16 6 2.5344 -0.1844 6.0844 17 7 3.3789 -1.1903 6.1527 18 14 2.0627 0.7460 7.6340 19 1 0.8694 0.1108 8.2488 20 1 3.1934 0.7106 8.5961 21 1 1.7503 2.1561 7.2888 22 1 -0.3634 -1.0179 -0.1410 23 1 -0.3633 0.3869 0.9521 24 1 -0.3633 0.6311 -0.8110 25 1 3.6098 0.8504 -1.6163 26 1 3.9311 -0.7522 -2.4706 27 1 0.6171 -1.5465 -3.6065 28 1 1.3598 -0.3461 -4.6905 29 1 2.3601 -1.6243 -3.9592 30 1 1.5604 1.9799 -1.9183 31 1 1.0700 1.7116 -3.6081 32 1 0.0313 1.1430 -2.2791 33 1 1.8761 -2.6151 0.3648 34 1 1.9053 -2.5655 2.1440 35 1 0.4384 -2.0742 1.2640 36 1 1.9298 1.0870 2.3124 37 1 0.5723 -0.0345 2.5726 38 1 2.0978 -1.6141 3.7241 39 1 3.4554 -0.4927 3.4641 40 1 3.7566 -1.4493 7.0077 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397635735.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:36 Heat of formation + Delta-G solvation = -3.981239 kcal Electronic energy + Delta-G solvation = -16045.842790 eV Core-core repulsion = 13667.245517 eV Total energy + Delta-G solvation = -2378.597273 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.51173 -38.03943 -35.22127 -32.50096 -30.46769 -30.08115 -28.14644 -27.64048 -26.00079 -24.13062 -21.94295 -20.74129 -19.33958 -18.63360 -17.01120 -16.50706 -16.12685 -15.72936 -15.21881 -14.88961 -14.58360 -14.56926 -14.08424 -13.76143 -13.59805 -13.33045 -13.07011 -12.90186 -12.79741 -12.61475 -12.60173 -12.46579 -12.17676 -11.99992 -11.72759 -11.53894 -11.31967 -11.21277 -10.69232 -10.53549 -10.30585 -9.04490 -8.19689 -6.31208 1.39745 1.41615 1.52794 2.40220 2.76036 3.13493 3.24092 3.68184 3.96622 3.99856 4.21794 4.24975 4.33644 4.42351 4.45378 4.56057 4.67082 4.69280 4.76182 4.83531 4.87993 4.96032 5.00571 5.10484 5.11534 5.12929 5.13962 5.16028 5.23600 5.38123 5.43709 5.48065 5.57804 5.68067 5.80530 6.12822 6.36563 6.40053 6.86059 7.37832 8.92581 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.054007 B = 0.005064 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.326705 B = 5527.889903 C = 5674.425866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.114 3.886 3 H 0.069 0.931 4 C -0.142 4.142 5 H 0.101 0.899 6 C -0.171 4.171 7 C -0.114 4.114 8 C -0.112 4.112 9 C -0.121 4.121 10 N -0.548 5.548 11 C 0.027 3.973 12 C 0.081 3.919 13 C 0.036 3.964 14 C -0.545 4.545 15 H 0.059 0.941 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.263 1.263 22 H 0.057 0.943 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.029 0.971 36 H 0.056 0.944 37 H 0.023 0.977 38 H -0.005 1.005 39 H -0.011 1.011 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 2.152 -18.561 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.006 3.994 3 H 0.087 0.913 4 C -0.160 4.160 5 H 0.119 0.881 6 C -0.208 4.208 7 C -0.114 4.114 8 C -0.169 4.169 9 C -0.178 4.178 10 N -0.271 5.271 11 C -0.121 4.121 12 C -0.046 4.046 13 C -0.001 4.001 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.187 1.187 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.013 0.987 39 H 0.008 0.992 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.996 2.045 -18.471 19.244 hybrid contribution -0.658 0.133 1.330 1.490 sum -5.654 2.178 -17.141 18.180 Atomic orbital electron populations 1.22532 0.96808 1.02623 1.02156 1.21244 0.93055 0.96824 0.88284 0.91250 1.22352 1.03750 0.98716 0.91230 0.88089 1.23255 0.91371 1.02531 1.03674 1.21679 0.98019 0.98055 0.93672 1.21349 1.01707 0.98351 0.95511 1.21539 1.00068 0.93785 1.02375 1.62166 1.59994 1.02824 1.02138 1.22361 0.97661 0.90073 1.01966 1.21936 0.96594 0.96854 0.89259 1.18930 0.94446 0.94928 0.91828 1.21627 1.26763 1.16426 0.93489 0.92280 1.25970 0.94799 0.96047 1.02827 1.70116 1.31573 1.29094 1.26436 0.85426 0.77917 0.79197 0.78368 1.19691 1.20660 1.18707 0.92355 0.93924 0.89652 0.89639 0.88481 0.92047 0.90943 0.92377 0.93140 0.90950 0.91286 0.90085 0.93536 0.95258 0.92534 0.95872 0.98689 0.99248 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.81 8.20 71.98 0.59 -4.22 16 2 C 0.11 3.38 1.92 44.91 0.09 3.46 16 3 H 0.07 2.14 7.12 -2.39 -0.02 2.12 16 4 C -0.14 -3.54 4.66 -10.79 -0.05 -3.59 16 5 H 0.10 2.57 6.21 -2.39 -0.01 2.56 16 6 C -0.17 -3.94 9.47 30.60 0.29 -3.65 16 7 C -0.11 -2.23 2.64 -52.18 -0.14 -2.36 16 8 C -0.11 -1.75 9.85 71.98 0.71 -1.05 16 9 C -0.12 -2.14 8.43 71.98 0.61 -1.53 16 10 N -0.55 -20.70 4.75 -897.08 -4.26 -24.96 16 11 C 0.03 0.96 8.71 127.69 1.11 2.07 16 12 C 0.08 3.59 4.35 86.31 0.38 3.97 16 13 C 0.04 2.00 4.90 29.85 0.15 2.15 16 14 C -0.54 -31.93 9.11 25.60 0.23 -31.70 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.00 0.08 5.46 84.65 0.46 0.55 16 17 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 18 Si 0.97 44.99 29.54 68.60 2.03 47.01 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 22 H 0.06 1.49 6.83 -2.39 -0.02 1.47 16 23 H 0.04 1.26 6.40 -2.38 -0.02 1.24 16 24 H 0.08 1.84 5.00 -2.39 -0.01 1.83 16 25 H 0.09 2.09 8.06 -2.39 -0.02 2.07 16 26 H 0.10 2.05 8.05 -2.39 -0.02 2.03 16 27 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.07 0.93 8.01 -2.39 -0.02 0.92 16 29 H 0.06 0.89 7.90 -2.39 -0.02 0.87 16 30 H 0.05 0.98 7.23 -2.38 -0.02 0.96 16 31 H 0.07 1.04 8.04 -2.39 -0.02 1.02 16 32 H 0.07 1.17 5.67 -2.38 -0.01 1.15 16 33 H 0.08 2.41 6.13 -2.39 -0.01 2.40 16 34 H 0.05 1.89 6.30 -2.39 -0.02 1.87 16 35 H 0.03 0.96 6.46 -2.39 -0.02 0.94 16 36 H 0.06 2.48 8.00 -2.39 -0.02 2.46 16 37 H 0.02 1.01 6.76 -2.39 -0.02 1.00 16 38 H -0.01 -0.31 6.47 -2.39 -0.02 -0.32 16 39 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -64.89 303.56 3.47 -61.42 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.99 Total: 10.23 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 4.42 Total: -35.90 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -3.98 Total: -82.76 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.89 3.47 -61.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397635735.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.443 kcal (2) G-P(sol) polarization free energy of solvation -64.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds