Wall clock time and date at job start Mon Mar 30 2020 03:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.46655 * 2 1 4 4 C 1.46905 * 110.99359 * 163.23576 * 3 2 1 5 5 C 1.50697 * 109.47016 * 293.95097 * 4 3 2 6 6 H 1.07994 * 120.00226 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99370 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00291 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99753 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47132 * 89.99863 * 9 7 5 11 11 H 1.48497 * 109.47208 * 210.00531 * 9 7 5 12 12 H 1.48504 * 109.47033 * 330.00388 * 9 7 5 13 13 C 1.46903 * 110.99922 * 287.18789 * 3 2 1 14 14 C 1.52998 * 109.47154 * 85.65922 * 13 3 2 15 15 H 1.09008 * 109.46828 * 304.12435 * 14 13 3 16 16 C 1.52997 * 109.47086 * 64.12304 * 14 13 3 17 17 C 1.53001 * 109.47308 * 184.12562 * 14 13 3 18 18 C 1.53778 * 113.61213 * 159.13395 * 17 14 13 19 19 C 1.53959 * 87.01910 * 220.04654 * 18 17 14 20 20 C 1.53781 * 113.61293 * 61.52577 * 17 14 13 21 21 H 1.09007 * 109.46763 * 196.65365 * 1 2 3 22 22 H 1.08997 * 109.47106 * 316.64643 * 1 2 3 23 23 H 1.08998 * 109.47532 * 76.65656 * 1 2 3 24 24 H 1.09003 * 109.46656 * 240.00621 * 2 1 3 25 25 H 1.08999 * 109.47415 * 120.00395 * 2 1 3 26 26 H 1.09000 * 109.46893 * 53.95934 * 4 3 2 27 27 H 1.08998 * 109.46342 * 173.95230 * 4 3 2 28 28 H 0.97005 * 119.99714 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46947 * 205.65908 * 13 3 2 30 30 H 1.08998 * 109.46973 * 325.65781 * 13 3 2 31 31 H 1.08998 * 109.47179 * 60.00245 * 16 14 13 32 32 H 1.09000 * 109.47198 * 180.02562 * 16 14 13 33 33 H 1.09004 * 109.47386 * 299.99837 * 16 14 13 34 34 H 1.08995 * 112.84810 * 290.33361 * 17 14 13 35 35 H 1.08997 * 113.62072 * 334.56890 * 18 17 14 36 36 H 1.08997 * 113.61150 * 105.47469 * 18 17 14 37 37 H 1.08992 * 113.53831 * 270.81853 * 19 18 17 38 38 H 1.08997 * 113.74064 * 139.94202 * 19 18 17 39 39 H 1.08998 * 113.61617 * 254.53201 * 20 17 14 40 40 H 1.09000 * 113.61278 * 25.43310 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4332 1.4436 0.3956 5 6 3.5705 1.0148 1.8337 6 1 2.6954 0.7271 2.3974 7 6 4.8136 0.9888 2.4295 8 7 5.8793 1.3387 1.7430 9 14 4.9840 0.4566 4.2120 10 1 5.1991 -1.0115 4.2719 11 1 6.1425 1.1522 4.8277 12 1 3.7457 0.8060 4.9535 13 6 1.8129 2.0165 -1.3102 14 6 0.4008 2.6014 -1.3774 15 1 -0.3273 1.8180 -1.1664 16 6 0.2619 3.7191 -0.3420 17 6 0.1493 3.1679 -2.7763 18 6 -1.3417 3.3120 -3.1236 19 6 -0.9785 2.8148 -4.5347 20 6 0.2290 2.1123 -3.8918 21 1 -0.3633 -0.9846 0.2945 22 1 -0.3633 0.7472 0.7055 23 1 -0.3634 0.2372 -0.9999 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 4.0162 0.7769 -0.2398 27 1 3.7995 2.4642 0.2841 28 1 6.7538 1.3207 2.1624 29 1 2.5433 2.8136 -1.4486 30 1 1.9353 1.2711 -2.0960 31 1 0.9899 4.5024 -0.5530 32 1 -0.7443 4.1355 -0.3895 33 1 0.4409 3.3155 0.6546 34 1 0.7341 4.0645 -2.9811 35 1 -1.9867 2.6279 -2.5722 36 1 -1.6977 4.3420 -3.1009 37 1 -0.7032 3.6156 -5.2209 38 1 -1.7093 2.1263 -4.9590 39 1 1.1392 2.1751 -4.4882 40 1 0.0143 1.0996 -3.5507 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398615342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:06 Heat of formation + Delta-G solvation = 5.116498 kcal Electronic energy + Delta-G solvation = -16324.778802 eV Core-core repulsion = 13946.576037 eV Total energy + Delta-G solvation = -2378.202766 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.23475 -36.84190 -33.04540 -32.07055 -30.03198 -27.14875 -25.83964 -25.12836 -24.00307 -22.36255 -20.44505 -19.60744 -19.20683 -16.29977 -15.38224 -15.30024 -14.68881 -14.48156 -13.97672 -13.50388 -12.88975 -12.60903 -12.37320 -12.27102 -12.18436 -12.14974 -11.58232 -11.37039 -11.09019 -11.02522 -10.75089 -10.67782 -10.54534 -10.46120 -10.32459 -10.00144 -9.83670 -9.57726 -9.51534 -9.05318 -8.40760 -7.12529 -5.99045 -3.99921 3.33569 3.39791 3.44321 4.45001 4.69238 4.76134 4.82894 4.94582 5.15991 5.36424 5.45540 5.64021 5.74778 5.77586 5.82569 5.86436 5.88135 5.93102 6.02313 6.06894 6.14390 6.18453 6.24688 6.32725 6.37993 6.55103 6.56449 6.57735 6.76113 6.84261 6.93208 6.99361 7.38422 7.43968 7.86450 8.17543 8.31446 8.64004 9.08544 9.64151 11.11814 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045288 B = 0.005935 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.121568 B = 4716.810324 C = 4827.180228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.057 3.943 3 N -0.533 5.533 4 C 0.193 3.807 5 C -0.505 4.505 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.062 3.938 14 C -0.086 4.086 15 H 0.081 0.919 16 C -0.133 4.133 17 C -0.104 4.104 18 C -0.134 4.134 19 C -0.144 4.144 20 C -0.137 4.137 21 H 0.044 0.956 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.015 0.985 25 H 0.082 0.918 26 H -0.013 1.013 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.059 0.941 30 H 0.025 0.975 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.324 1.833 -9.108 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 N -0.258 5.258 4 C 0.068 3.932 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.067 4.067 14 C -0.104 4.104 15 H 0.099 0.901 16 C -0.190 4.190 17 C -0.123 4.123 18 C -0.172 4.172 19 C -0.182 4.182 20 C -0.174 4.174 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.034 0.966 25 H 0.100 0.900 26 H 0.005 0.995 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.381 2.121 -8.730 15.298 hybrid contribution 0.822 -0.685 0.285 1.107 sum -11.559 1.436 -8.445 14.387 Atomic orbital electron populations 1.22024 0.96969 1.00616 1.00861 1.22005 0.93988 0.90513 1.00602 1.62063 1.22891 1.15727 1.25074 1.19731 0.81247 0.96636 0.95561 1.21186 0.92851 1.43844 0.96438 0.91881 1.24988 0.95852 0.95693 0.98116 1.69963 0.98553 1.48774 1.36664 0.86530 0.77654 0.78484 0.84937 1.20811 1.21313 1.19784 1.22088 0.95942 0.97856 0.90841 1.21441 0.98101 0.98188 0.92719 0.90090 1.21635 0.99266 0.97576 1.00552 1.22596 0.96098 0.98559 0.95043 1.22947 0.96905 1.00920 0.96416 1.22851 0.98538 1.00135 0.96650 1.22909 0.97990 0.98755 0.97776 0.93735 0.91863 0.93436 0.96642 0.89994 0.99487 0.95332 0.93009 0.92289 0.95711 0.93765 0.94432 0.91015 0.89810 0.90355 0.92024 0.90664 0.92000 0.91923 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.50 37.16 0.32 -2.02 16 2 C 0.06 1.13 5.51 -3.82 -0.02 1.11 16 3 N -0.53 -11.46 3.81 -236.06 -0.90 -12.36 16 4 C 0.19 5.10 4.66 -4.97 -0.02 5.07 16 5 C -0.50 -14.25 8.27 -34.44 -0.28 -14.53 16 6 H 0.06 1.76 7.27 -52.49 -0.38 1.38 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.13 4.32 -3.82 -0.02 1.11 16 14 C -0.09 -1.29 2.01 -90.62 -0.18 -1.47 16 15 H 0.08 1.21 4.21 -51.92 -0.22 0.99 16 16 C -0.13 -2.06 9.05 37.16 0.34 -1.73 16 17 C -0.10 -1.32 3.11 -89.81 -0.28 -1.60 16 18 C -0.13 -1.47 7.63 -25.83 -0.20 -1.67 16 19 C -0.14 -1.47 8.09 -25.82 -0.21 -1.68 16 20 C -0.14 -1.62 6.67 -25.92 -0.17 -1.80 16 21 H 0.04 0.63 8.14 -51.92 -0.42 0.20 16 22 H 0.06 1.04 8.06 -51.93 -0.42 0.62 16 23 H 0.05 0.69 6.15 -51.93 -0.32 0.37 16 24 H 0.02 0.30 7.72 -51.93 -0.40 -0.10 16 25 H 0.08 1.78 6.58 -51.93 -0.34 1.44 16 26 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 27 H 0.03 0.81 7.79 -51.93 -0.40 0.40 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.06 1.14 7.57 -51.93 -0.39 0.75 16 30 H 0.02 0.44 6.80 -51.93 -0.35 0.09 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 1.28 7.73 -51.93 -0.40 0.88 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 0.85 7.99 -51.93 -0.41 0.44 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 308.74 15.07 4.65 4.65 Total: -1.00 -28.96 308.74 -8.77 -37.72 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -7.41 Total: -2.77 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -0.83 Total: -17.74 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: -0.16 Total: -38.65 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.96 -8.77 -37.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398615342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.841 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds