Wall clock time and date at job start Mon Mar 30 2020 03:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.46655 * 2 1 4 4 C 1.46905 * 110.99359 * 163.23576 * 3 2 1 5 5 C 1.50697 * 109.47016 * 293.95097 * 4 3 2 6 6 H 1.07994 * 120.00226 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99370 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00291 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99753 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47132 * 89.99863 * 9 7 5 11 11 H 1.48497 * 109.47208 * 210.00531 * 9 7 5 12 12 H 1.48504 * 109.47033 * 330.00388 * 9 7 5 13 13 C 1.46903 * 110.99922 * 287.18789 * 3 2 1 14 14 C 1.52998 * 109.47154 * 85.65922 * 13 3 2 15 15 H 1.09008 * 109.46828 * 304.12435 * 14 13 3 16 16 C 1.52997 * 109.47086 * 64.12304 * 14 13 3 17 17 C 1.53001 * 109.47308 * 184.12562 * 14 13 3 18 18 C 1.53778 * 113.61213 * 159.13395 * 17 14 13 19 19 C 1.53959 * 87.01910 * 220.04654 * 18 17 14 20 20 C 1.53781 * 113.61293 * 61.52577 * 17 14 13 21 21 H 1.09007 * 109.46763 * 196.65365 * 1 2 3 22 22 H 1.08997 * 109.47106 * 316.64643 * 1 2 3 23 23 H 1.08998 * 109.47532 * 76.65656 * 1 2 3 24 24 H 1.09003 * 109.46656 * 240.00621 * 2 1 3 25 25 H 1.08999 * 109.47415 * 120.00395 * 2 1 3 26 26 H 1.09000 * 109.46893 * 53.95934 * 4 3 2 27 27 H 1.08998 * 109.46342 * 173.95230 * 4 3 2 28 28 H 0.97005 * 119.99714 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46947 * 205.65908 * 13 3 2 30 30 H 1.08998 * 109.46973 * 325.65781 * 13 3 2 31 31 H 1.08998 * 109.47179 * 60.00245 * 16 14 13 32 32 H 1.09000 * 109.47198 * 180.02562 * 16 14 13 33 33 H 1.09004 * 109.47386 * 299.99837 * 16 14 13 34 34 H 1.08995 * 112.84810 * 290.33361 * 17 14 13 35 35 H 1.08997 * 113.62072 * 334.56890 * 18 17 14 36 36 H 1.08997 * 113.61150 * 105.47469 * 18 17 14 37 37 H 1.08992 * 113.53831 * 270.81853 * 19 18 17 38 38 H 1.08997 * 113.74064 * 139.94202 * 19 18 17 39 39 H 1.08998 * 113.61617 * 254.53201 * 20 17 14 40 40 H 1.09000 * 113.61278 * 25.43310 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4332 1.4436 0.3956 5 6 3.5705 1.0148 1.8337 6 1 2.6954 0.7271 2.3974 7 6 4.8136 0.9888 2.4295 8 7 5.8793 1.3387 1.7430 9 14 4.9840 0.4566 4.2120 10 1 5.1991 -1.0115 4.2719 11 1 6.1425 1.1522 4.8277 12 1 3.7457 0.8060 4.9535 13 6 1.8129 2.0165 -1.3102 14 6 0.4008 2.6014 -1.3774 15 1 -0.3273 1.8180 -1.1664 16 6 0.2619 3.7191 -0.3420 17 6 0.1493 3.1679 -2.7763 18 6 -1.3417 3.3120 -3.1236 19 6 -0.9785 2.8148 -4.5347 20 6 0.2290 2.1123 -3.8918 21 1 -0.3633 -0.9846 0.2945 22 1 -0.3633 0.7472 0.7055 23 1 -0.3634 0.2372 -0.9999 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 4.0162 0.7769 -0.2398 27 1 3.7995 2.4642 0.2841 28 1 6.7538 1.3207 2.1624 29 1 2.5433 2.8136 -1.4486 30 1 1.9353 1.2711 -2.0960 31 1 0.9899 4.5024 -0.5530 32 1 -0.7443 4.1355 -0.3895 33 1 0.4409 3.3155 0.6546 34 1 0.7341 4.0645 -2.9811 35 1 -1.9867 2.6279 -2.5722 36 1 -1.6977 4.3420 -3.1009 37 1 -0.7032 3.6156 -5.2209 38 1 -1.7093 2.1263 -4.9590 39 1 1.1392 2.1751 -4.4882 40 1 0.0143 1.0996 -3.5507 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398615342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:06 Heat of formation + Delta-G solvation = -10.715320 kcal Electronic energy + Delta-G solvation = -16325.465321 eV Core-core repulsion = 13946.576037 eV Total energy + Delta-G solvation = -2378.889285 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34753 -38.37746 -34.98615 -33.60857 -31.67063 -28.97721 -27.13704 -26.09754 -25.41367 -24.24942 -21.89930 -21.06513 -20.20406 -18.46725 -16.95940 -16.46105 -16.14757 -16.00615 -15.57102 -15.03970 -14.28360 -14.27123 -14.03007 -13.63508 -13.40160 -13.24447 -12.96166 -12.87370 -12.65421 -12.51919 -12.45332 -12.32286 -12.15047 -11.85828 -11.70384 -11.41650 -11.31411 -10.91630 -10.84866 -10.65996 -10.59989 -8.93301 -8.20041 -6.30157 1.40316 1.41966 1.53731 2.40329 3.12065 3.31266 3.81157 3.82314 3.93942 4.06612 4.17457 4.29140 4.50633 4.57351 4.61928 4.69289 4.78518 4.80599 4.88478 4.95453 4.97764 5.00334 5.06835 5.13593 5.15146 5.15859 5.19882 5.27190 5.34871 5.45212 5.49801 5.58717 5.61206 5.67142 5.79540 6.08043 6.41931 6.71920 6.87575 7.39699 8.91168 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045288 B = 0.005935 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.121568 B = 4716.810324 C = 4827.180228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 N -0.535 5.535 4 C 0.209 3.791 5 C -0.520 4.520 6 H 0.063 0.937 7 C 0.000 4.000 8 N -0.937 5.937 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.264 1.264 13 C 0.063 3.937 14 C -0.075 4.075 15 H 0.089 0.911 16 C -0.129 4.129 17 C -0.109 4.109 18 C -0.127 4.127 19 C -0.134 4.134 20 C -0.142 4.142 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.015 0.985 25 H 0.057 0.943 26 H -0.045 1.045 27 H -0.001 1.001 28 H 0.264 0.736 29 H 0.039 0.961 30 H 0.028 0.972 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.497 1.537 -9.136 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 N -0.259 5.259 4 C 0.082 3.918 5 C -0.558 4.558 6 H 0.082 0.918 7 C -0.198 4.198 8 N -0.578 5.578 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.188 1.188 13 C -0.065 4.065 14 C -0.093 4.093 15 H 0.107 0.893 16 C -0.186 4.186 17 C -0.128 4.128 18 C -0.165 4.165 19 C -0.171 4.171 20 C -0.179 4.179 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.033 0.967 25 H 0.075 0.925 26 H -0.027 1.027 27 H 0.017 0.983 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.581 1.823 -8.773 17.114 hybrid contribution 1.524 -0.587 0.237 1.650 sum -13.057 1.236 -8.536 15.648 Atomic orbital electron populations 1.21901 0.93324 1.01924 1.01974 1.22060 0.96875 0.88999 0.99359 1.62076 1.19410 1.17256 1.27180 1.19376 0.83826 0.93808 0.94748 1.21466 0.93134 1.43957 0.97230 0.91845 1.25935 0.95370 0.95474 1.02991 1.70098 0.99163 1.49697 1.38809 0.85377 0.77899 0.78355 0.78958 1.19778 1.20780 1.18832 1.22169 0.97943 0.97178 0.89244 1.21358 0.95484 0.98109 0.94382 0.89305 1.21583 1.00550 0.97440 0.99065 1.22601 0.98021 0.98697 0.93498 1.22928 0.95082 1.01788 0.96671 1.22813 0.97625 1.00247 0.96446 1.22939 0.98871 0.98484 0.97639 0.91465 0.92317 0.91565 0.96687 0.92486 1.02744 0.98335 0.92747 0.94246 0.95346 0.94593 0.91833 0.93717 0.90189 0.89828 0.91020 0.89825 0.90698 0.92400 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 8.50 71.98 0.61 -3.36 16 2 C 0.06 2.18 5.51 86.30 0.48 2.66 16 3 N -0.54 -23.64 3.81 -900.77 -3.43 -27.07 16 4 C 0.21 11.57 4.66 85.56 0.40 11.97 16 5 C -0.52 -30.15 8.27 25.60 0.21 -29.94 16 6 H 0.06 3.60 7.27 -2.91 -0.02 3.58 16 7 C 0.00 0.00 5.46 84.66 0.46 0.46 16 8 N -0.94 -57.74 13.29 21.45 0.28 -57.46 16 9 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 13 C 0.06 2.34 4.32 86.30 0.37 2.72 16 14 C -0.07 -2.17 2.01 -10.79 -0.02 -2.19 16 15 H 0.09 2.45 4.21 -2.38 -0.01 2.44 16 16 C -0.13 -3.91 9.05 71.98 0.65 -3.26 16 17 C -0.11 -2.58 3.11 -10.27 -0.03 -2.62 16 18 C -0.13 -2.38 7.63 31.18 0.24 -2.14 16 19 C -0.13 -2.32 8.09 31.18 0.25 -2.07 16 20 C -0.14 -3.10 6.67 31.12 0.21 -2.89 16 21 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 22 H 0.06 1.81 8.06 -2.39 -0.02 1.79 16 23 H 0.07 1.72 6.15 -2.39 -0.01 1.71 16 24 H 0.01 0.59 7.72 -2.39 -0.02 0.57 16 25 H 0.06 2.52 6.58 -2.39 -0.02 2.50 16 26 H -0.05 -2.73 8.12 -2.39 -0.02 -2.75 16 27 H 0.00 -0.09 7.79 -2.39 -0.02 -0.11 16 28 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 29 H 0.04 1.60 7.57 -2.39 -0.02 1.58 16 30 H 0.03 1.03 6.80 -2.39 -0.02 1.01 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.04 1.59 7.73 -2.39 -0.02 1.57 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 1.50 7.99 -2.39 -0.02 1.49 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 Total: -1.00 -63.71 308.74 3.67 -60.03 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 0.97 Total: 8.10 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 3.83 Total: -30.66 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -3.15 Total: -84.53 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -63.71 3.67 -60.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398615342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.319 kcal (2) G-P(sol) polarization free energy of solvation -63.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds