Wall clock time and date at job start Mon Mar 30 2020 03:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.47311 * 2 1 4 4 C 1.46897 * 111.00181 * 288.01022 * 3 2 1 5 5 C 1.50702 * 109.47174 * 160.36409 * 4 3 2 6 6 H 1.08000 * 120.00162 * 4.89426 * 5 4 3 7 7 C 1.37881 * 120.00137 * 184.90107 * 5 4 3 8 8 N 1.31513 * 120.00178 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99785 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46900 * 90.00532 * 9 7 5 11 11 H 1.48496 * 109.47415 * 210.00240 * 9 7 5 12 12 H 1.48500 * 109.47240 * 330.00528 * 9 7 5 13 13 C 1.46898 * 111.00309 * 164.05456 * 3 2 1 14 14 C 1.53005 * 109.47200 * 293.95978 * 13 3 2 15 15 H 1.08997 * 109.47342 * 54.99314 * 14 13 3 16 16 C 1.53003 * 109.46769 * 294.99266 * 14 13 3 17 17 C 1.52999 * 109.47134 * 174.99751 * 14 13 3 18 18 C 1.53780 * 113.61526 * 277.49203 * 17 14 13 19 19 C 1.53776 * 87.08443 * 220.02145 * 18 17 14 20 20 C 1.53786 * 113.61156 * 179.97438 * 17 14 13 21 21 H 1.08995 * 109.47408 * 179.54519 * 1 2 3 22 22 H 1.09000 * 109.46706 * 299.54866 * 1 2 3 23 23 H 1.08998 * 109.46870 * 59.54254 * 1 2 3 24 24 H 1.09002 * 109.47337 * 240.00200 * 2 1 3 25 25 H 1.08998 * 109.46717 * 120.00376 * 2 1 3 26 26 H 1.08997 * 109.47144 * 280.36394 * 4 3 2 27 27 H 1.09002 * 109.46965 * 40.36523 * 4 3 2 28 28 H 0.96993 * 119.99971 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.47740 * 173.95827 * 13 3 2 30 30 H 1.09001 * 109.47006 * 53.95093 * 13 3 2 31 31 H 1.09006 * 109.46556 * 60.00175 * 16 14 13 32 32 H 1.08997 * 109.47377 * 179.97438 * 16 14 13 33 33 H 1.08997 * 109.47728 * 300.00289 * 16 14 13 34 34 H 1.08997 * 112.85277 * 48.80459 * 17 14 13 35 35 H 1.08998 * 113.61178 * 334.57029 * 18 17 14 36 36 H 1.09000 * 113.61245 * 105.46835 * 18 17 14 37 37 H 1.09002 * 113.61329 * 270.88741 * 19 18 17 38 38 H 1.08997 * 113.69229 * 139.99153 * 19 18 17 39 39 H 1.08994 * 113.61703 * 254.52527 * 20 17 14 40 40 H 1.09001 * 113.61607 * 25.35260 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7955 2.0226 -1.3042 5 6 1.8470 3.5205 -1.1465 6 1 2.1061 3.9544 -0.1920 7 6 1.5631 4.3370 -2.2206 8 7 1.6086 5.6441 -2.0831 9 14 1.1154 3.5865 -3.8716 10 1 -0.3554 3.3955 -3.9459 11 1 1.5524 4.4940 -4.9627 12 1 1.7932 2.2734 -4.0186 13 6 3.4384 1.4417 0.3767 14 6 3.5976 0.9993 1.8328 15 1 3.1523 0.0131 1.9636 16 6 2.8948 2.0020 2.7502 17 6 5.0846 0.9386 2.1877 18 6 5.7697 -0.3667 1.7499 19 6 6.5289 -0.3244 3.0865 20 6 5.3545 0.5023 3.6375 21 1 -0.3634 -1.0276 -0.0082 22 1 -0.3633 0.5068 0.8940 23 1 -0.3633 0.5209 -0.8858 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.5695 1.7040 -2.0023 27 1 0.8177 1.7311 -1.6878 28 1 1.4092 6.2185 -2.8389 29 1 3.8034 2.4627 0.2653 30 1 4.0128 0.7779 -0.2694 31 1 1.8354 2.0452 2.4972 32 1 3.0078 1.6867 3.7874 33 1 3.3401 2.9883 2.6194 34 1 5.6268 1.8375 1.8944 35 1 5.0857 -1.2108 1.6629 36 1 6.4136 -0.2507 0.8781 37 1 7.4671 0.2285 3.0385 38 1 6.6364 -1.3001 3.5603 39 1 5.6635 1.3196 4.2891 40 1 4.5564 -0.1030 4.0671 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398615344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:08 Heat of formation + Delta-G solvation = 6.013736 kcal Electronic energy + Delta-G solvation = -16307.816931 eV Core-core repulsion = 13929.653072 eV Total energy + Delta-G solvation = -2378.163858 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.21531 -37.00494 -32.93875 -32.34325 -30.02195 -27.54113 -26.02460 -25.00659 -23.98973 -22.39017 -20.63001 -19.28541 -19.09580 -16.78268 -15.45283 -15.41069 -14.55266 -14.38502 -14.07771 -13.58891 -13.27503 -12.79145 -12.43244 -12.38092 -12.20358 -11.85534 -11.77992 -11.38720 -11.30571 -11.12394 -10.84960 -10.64173 -10.56475 -10.37922 -10.34976 -9.99944 -9.85980 -9.77100 -9.45299 -9.21717 -8.51067 -7.25133 -6.00383 -3.96067 3.30335 3.37919 3.40344 4.45814 4.65268 4.75222 4.80338 4.93041 5.03474 5.32443 5.39552 5.60705 5.66120 5.75985 5.77947 5.81928 5.89031 5.89883 5.94074 6.00885 6.08256 6.10932 6.26202 6.28705 6.40649 6.49132 6.52812 6.57536 6.62418 6.73314 6.85956 6.92255 7.01001 7.02808 7.70614 8.01128 8.15496 8.73533 9.10489 9.62418 11.13102 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030151 B = 0.006967 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.439721 B = 4018.037552 C = 4339.532991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.523 5.523 4 C 0.160 3.840 5 C -0.501 4.501 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.070 3.930 14 C -0.077 4.077 15 H 0.063 0.937 16 C -0.132 4.132 17 C -0.103 4.103 18 C -0.138 4.138 19 C -0.144 4.144 20 C -0.134 4.134 21 H 0.044 0.956 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.018 0.982 25 H 0.064 0.936 26 H -0.015 1.015 27 H 0.025 0.975 28 H 0.262 0.738 29 H 0.083 0.917 30 H 0.016 0.984 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.447 -12.375 8.152 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 N -0.247 5.247 4 C 0.034 3.966 5 C -0.540 4.540 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.194 1.194 13 C -0.059 4.059 14 C -0.095 4.095 15 H 0.081 0.919 16 C -0.190 4.190 17 C -0.122 4.122 18 C -0.175 4.175 19 C -0.181 4.181 20 C -0.171 4.171 21 H 0.063 0.937 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.003 0.997 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.147 -11.938 8.390 15.473 hybrid contribution 0.198 -0.704 -1.674 1.827 sum 5.345 -12.642 6.716 15.281 Atomic orbital electron populations 1.21755 0.95681 0.99899 1.02836 1.22086 0.95846 0.91194 0.99163 1.61965 1.16599 1.13772 1.32404 1.20202 0.95127 0.95969 0.85275 1.21053 1.45988 0.88261 0.98652 0.90152 1.24897 0.95381 0.94712 0.98443 1.69893 1.50162 1.02812 1.31323 0.86906 0.79157 0.79419 0.84521 1.20215 1.21278 1.19438 1.22012 0.88919 1.01494 0.93444 1.21178 0.93305 0.99227 0.95815 0.91884 1.21633 1.01917 0.98551 0.96867 1.22580 0.96299 0.97643 0.95708 1.22945 0.99218 0.98322 0.97038 1.22821 0.97716 1.00057 0.97554 1.22898 0.97944 0.99536 0.96727 0.93652 0.92127 0.92490 0.96395 0.91808 0.99718 0.95699 0.92791 0.89862 0.96559 0.91314 0.94353 0.93036 0.89316 0.90485 0.91878 0.90550 0.92033 0.91862 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.98 37.16 0.37 -1.98 16 2 C 0.05 0.80 5.55 -3.83 -0.02 0.77 16 3 N -0.52 -10.89 3.83 -236.08 -0.91 -11.80 16 4 C 0.16 3.94 3.65 -4.98 -0.02 3.92 16 5 C -0.50 -14.34 9.17 -34.44 -0.32 -14.65 16 6 H 0.08 2.50 7.89 -52.49 -0.41 2.09 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 9 Si 0.87 21.81 27.37 -169.99 -4.65 17.15 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.54 6.69 56.52 0.38 -6.17 16 13 C 0.07 1.31 4.17 -3.82 -0.02 1.30 16 14 C -0.08 -1.16 2.08 -90.62 -0.19 -1.35 16 15 H 0.06 0.93 5.90 -51.93 -0.31 0.62 16 16 C -0.13 -2.09 8.88 37.16 0.33 -1.76 16 17 C -0.10 -1.36 3.13 -89.81 -0.28 -1.64 16 18 C -0.14 -1.63 7.63 -25.92 -0.20 -1.82 16 19 C -0.14 -1.49 8.08 -25.90 -0.21 -1.70 16 20 C -0.13 -1.50 6.68 -25.89 -0.17 -1.67 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.06 1.02 6.53 -51.93 -0.34 0.68 16 24 H 0.02 0.31 8.05 -51.93 -0.42 -0.10 16 25 H 0.06 0.99 5.87 -51.93 -0.30 0.68 16 26 H -0.01 -0.37 7.40 -51.93 -0.38 -0.76 16 27 H 0.03 0.61 5.40 -51.93 -0.28 0.33 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 29 H 0.08 1.79 7.32 -51.93 -0.38 1.41 16 30 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 31 H 0.07 1.22 7.75 -51.93 -0.40 0.81 16 32 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.08 0.90 7.96 -51.93 -0.41 0.48 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.86 8.09 -51.93 -0.42 0.43 16 LS Contribution 307.72 15.07 4.64 4.64 Total: -1.00 -29.70 307.72 -8.38 -38.08 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.41 Total: -2.22 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -0.82 Total: -18.74 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: -0.13 Total: -38.91 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.65 Total: 17.15 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.70 -8.38 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398615344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.096 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds