Wall clock time and date at job start Mon Mar 30 2020 02:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50702 * 109.46931 * 119.99922 * 2 1 3 5 5 H 1.08001 * 119.99799 * 120.00204 * 4 2 1 6 6 C 1.37871 * 119.99991 * 299.99732 * 4 2 1 7 7 N 1.31518 * 120.00204 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00187 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46794 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47327 * 120.00173 * 8 6 4 11 11 H 1.48502 * 109.47268 * 240.00423 * 8 6 4 12 12 N 1.46905 * 109.47340 * 239.99847 * 2 1 3 13 13 C 1.46899 * 110.99699 * 306.04587 * 12 2 1 14 14 C 1.46901 * 110.99913 * 69.99827 * 12 2 1 15 15 C 1.53006 * 109.46870 * 75.82244 * 14 12 2 16 16 H 1.09004 * 109.47112 * 304.32244 * 15 14 12 17 17 C 1.52998 * 109.46926 * 64.32024 * 15 14 12 18 18 C 1.53004 * 109.47036 * 184.32158 * 15 14 12 19 19 C 1.53774 * 113.61221 * 159.13711 * 18 15 14 20 20 C 1.53958 * 87.01886 * 220.04592 * 19 18 15 21 21 C 1.53781 * 87.11014 * 25.36514 * 20 19 18 22 22 H 1.09000 * 109.46731 * 60.00262 * 1 2 3 23 23 H 1.08991 * 109.46850 * 300.00217 * 1 2 3 24 24 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 25 25 H 0.97005 * 120.00394 * 179.97438 * 7 6 4 26 26 H 1.09008 * 109.47063 * 66.13458 * 13 12 2 27 27 H 1.08997 * 109.47025 * 186.12691 * 13 12 2 28 28 H 1.08996 * 109.47311 * 306.13249 * 13 12 2 29 29 H 1.08999 * 109.47206 * 195.82243 * 14 12 2 30 30 H 1.08997 * 109.47284 * 315.82748 * 14 12 2 31 31 H 1.08998 * 109.46943 * 56.37890 * 17 15 14 32 32 H 1.09004 * 109.46805 * 176.37108 * 17 15 14 33 33 H 1.08995 * 109.47350 * 296.37582 * 17 15 14 34 34 H 1.08994 * 112.84623 * 290.33786 * 18 15 14 35 35 H 1.08993 * 113.61827 * 334.56734 * 19 18 15 36 36 H 1.08997 * 113.61199 * 105.47161 * 19 18 15 37 37 H 1.08994 * 113.53829 * 270.81788 * 20 19 18 38 38 H 1.09004 * 113.73994 * 139.94344 * 20 19 18 39 39 H 1.08998 * 113.61707 * 220.09203 * 21 20 19 40 40 H 1.08997 * 113.61750 * 89.18405 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1483 -2.2855 3.6039 10 1 3.1472 -0.1856 4.8162 11 1 1.1677 -1.5865 4.8165 12 7 2.0198 -0.6925 -1.1994 13 6 1.4344 -2.0355 -1.3077 14 6 1.7530 0.0971 -2.4091 15 6 2.7487 1.2560 -2.4914 16 1 2.6947 1.8471 -1.5772 17 6 4.1648 0.7008 -2.6569 18 6 2.4040 2.1402 -3.6916 19 6 2.9793 3.5629 -3.5939 20 6 1.6443 4.0564 -4.1809 21 6 1.0085 2.7803 -3.6046 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7081 1.1610 3.4844 26 1 0.3611 -1.9513 -1.4786 27 1 1.8944 -2.5662 -2.1413 28 1 1.6132 -2.5854 -0.3838 29 1 1.8608 -0.5377 -3.2885 30 1 0.7381 0.4925 -2.3684 31 1 4.2024 0.0575 -3.5360 32 1 4.8663 1.5259 -2.7802 33 1 4.4344 0.1236 -1.7725 34 1 2.6023 1.6536 -4.6465 35 1 3.1549 3.8935 -2.5703 36 1 3.8345 3.7339 -4.2476 37 1 1.6355 4.0950 -5.2701 38 1 1.2754 4.9737 -3.7218 39 1 0.2751 2.3204 -4.2669 40 1 0.6444 2.8965 -2.5838 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398640279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:34 Heat of formation + Delta-G solvation = 8.070228 kcal Electronic energy + Delta-G solvation = -16588.787538 eV Core-core repulsion = 14210.712855 eV Total energy + Delta-G solvation = -2378.074682 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.10038 -36.98963 -33.25125 -31.94486 -28.58265 -26.64835 -25.27455 -25.16276 -25.00127 -23.06200 -20.55296 -19.19724 -18.50165 -16.16887 -15.26477 -15.16424 -14.90827 -14.10595 -13.87598 -13.36081 -13.00362 -12.38858 -12.20548 -12.18187 -12.00099 -11.58607 -11.42987 -11.31635 -10.93553 -10.89558 -10.70519 -10.57469 -10.40087 -10.31064 -10.19360 -10.00742 -9.73360 -9.55766 -9.52751 -8.78823 -8.32610 -7.00608 -5.96318 -3.99131 3.32313 3.40228 3.45015 4.45493 4.79048 4.88613 4.94730 5.06367 5.30346 5.35795 5.55227 5.75927 5.85838 5.91721 5.95485 6.03799 6.05450 6.15764 6.21605 6.21957 6.28125 6.34386 6.45593 6.60879 6.63909 6.67101 6.75252 6.89629 6.93789 6.96813 7.01833 7.22609 7.56104 7.77888 7.91837 8.24374 8.46943 8.69493 9.07856 9.65765 11.10825 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032011 B = 0.007228 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.476277 B = 3872.687508 C = 4044.153107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.535 5.535 13 C 0.036 3.964 14 C 0.059 3.941 15 C -0.075 4.075 16 H 0.075 0.925 17 C -0.130 4.130 18 C -0.103 4.103 19 C -0.135 4.135 20 C -0.144 4.144 21 C -0.137 4.137 22 H 0.007 0.993 23 H 0.086 0.914 24 H 0.029 0.971 25 H 0.258 0.742 26 H 0.013 0.987 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.478 2.623 -11.420 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.057 0.943 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.213 1.213 12 N -0.258 5.258 13 C -0.112 4.112 14 C -0.069 4.069 15 C -0.093 4.093 16 H 0.093 0.907 17 C -0.188 4.188 18 C -0.122 4.122 19 C -0.172 4.172 20 C -0.182 4.182 21 C -0.174 4.174 22 H 0.026 0.974 23 H 0.105 0.895 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.031 0.969 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.920 2.671 -11.228 11.700 hybrid contribution -0.723 -0.319 0.803 1.127 sum 1.197 2.352 -10.425 10.754 Atomic orbital electron populations 1.22392 1.01165 0.99245 1.00312 1.19296 0.89477 0.94608 0.86211 0.94269 1.21181 1.30140 1.12305 0.89754 0.92021 1.24926 0.95349 0.95174 0.98948 1.69901 1.37312 1.23201 1.23125 0.86506 0.78507 0.79695 0.83080 1.19781 1.21138 1.21264 1.62300 1.58672 1.02202 1.02612 1.22192 0.95883 0.92024 1.01122 1.22037 0.96697 0.94763 0.93430 1.21088 0.95498 0.95794 0.96966 0.90699 1.21616 0.95544 0.99695 1.01902 1.22566 0.95996 0.94633 0.98982 1.22952 0.96465 0.96536 1.01253 1.22846 0.97506 0.97928 0.99913 1.22923 0.96659 0.96347 1.01502 0.97441 0.89498 0.95215 0.93191 0.96893 0.94192 0.90937 0.93126 0.95114 0.94109 0.94270 0.91127 0.90018 0.90042 0.92119 0.90823 0.91886 0.92141 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.25 37.16 0.31 -3.91 16 2 C 0.21 5.27 2.22 -68.86 -0.15 5.12 16 3 H 0.04 1.08 6.58 -51.93 -0.34 0.74 16 4 C -0.50 -13.60 7.88 -34.44 -0.27 -13.87 16 5 H 0.06 1.71 7.14 -52.49 -0.37 1.34 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.62 11.32 55.43 0.63 -25.00 16 8 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.53 -11.51 4.12 -236.27 -0.97 -12.48 16 13 C 0.04 0.73 8.57 60.06 0.51 1.24 16 14 C 0.06 1.09 4.18 -3.82 -0.02 1.08 16 15 C -0.07 -1.26 2.17 -90.62 -0.20 -1.45 16 16 H 0.07 1.47 6.52 -51.93 -0.34 1.13 16 17 C -0.13 -2.09 9.01 37.16 0.33 -1.75 16 18 C -0.10 -1.43 3.11 -89.81 -0.28 -1.71 16 19 C -0.13 -1.71 7.60 -25.83 -0.20 -1.91 16 20 C -0.14 -1.71 8.09 -25.83 -0.21 -1.92 16 21 C -0.14 -1.87 6.67 -25.92 -0.17 -2.04 16 22 H 0.01 0.15 6.45 -51.93 -0.34 -0.18 16 23 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 24 H 0.03 0.70 6.46 -51.93 -0.34 0.37 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.01 0.25 6.60 -51.92 -0.34 -0.09 16 27 H 0.04 0.69 8.11 -51.93 -0.42 0.27 16 28 H 0.07 1.55 6.71 -51.93 -0.35 1.20 16 29 H 0.05 0.86 7.92 -51.93 -0.41 0.45 16 30 H 0.03 0.59 5.39 -51.93 -0.28 0.31 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 33 H 0.07 1.30 7.83 -51.93 -0.41 0.89 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.11 7.99 -51.93 -0.41 0.69 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 LS Contribution 302.48 15.07 4.56 4.56 Total: -1.00 -27.69 302.48 -8.42 -36.11 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.18 Total: -0.02 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -0.43 Total: -19.64 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.35 Total: -37.48 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.69 -8.42 -36.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398640279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.175 kcal (2) G-P(sol) polarization free energy of solvation -27.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds