Wall clock time and date at job start Mon Mar 30 2020 02:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50702 * 109.46931 * 119.99922 * 2 1 3 5 5 H 1.08001 * 119.99799 * 120.00204 * 4 2 1 6 6 C 1.37871 * 119.99991 * 299.99732 * 4 2 1 7 7 N 1.31518 * 120.00204 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00187 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46794 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47327 * 120.00173 * 8 6 4 11 11 H 1.48502 * 109.47268 * 240.00423 * 8 6 4 12 12 N 1.46905 * 109.47340 * 239.99847 * 2 1 3 13 13 C 1.46899 * 110.99699 * 306.04587 * 12 2 1 14 14 C 1.46901 * 110.99913 * 69.99827 * 12 2 1 15 15 C 1.53006 * 109.46870 * 75.82244 * 14 12 2 16 16 H 1.09004 * 109.47112 * 304.32244 * 15 14 12 17 17 C 1.52998 * 109.46926 * 64.32024 * 15 14 12 18 18 C 1.53004 * 109.47036 * 184.32158 * 15 14 12 19 19 C 1.53774 * 113.61221 * 159.13711 * 18 15 14 20 20 C 1.53958 * 87.01886 * 220.04592 * 19 18 15 21 21 C 1.53781 * 87.11014 * 25.36514 * 20 19 18 22 22 H 1.09000 * 109.46731 * 60.00262 * 1 2 3 23 23 H 1.08991 * 109.46850 * 300.00217 * 1 2 3 24 24 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 25 25 H 0.97005 * 120.00394 * 179.97438 * 7 6 4 26 26 H 1.09008 * 109.47063 * 66.13458 * 13 12 2 27 27 H 1.08997 * 109.47025 * 186.12691 * 13 12 2 28 28 H 1.08996 * 109.47311 * 306.13249 * 13 12 2 29 29 H 1.08999 * 109.47206 * 195.82243 * 14 12 2 30 30 H 1.08997 * 109.47284 * 315.82748 * 14 12 2 31 31 H 1.08998 * 109.46943 * 56.37890 * 17 15 14 32 32 H 1.09004 * 109.46805 * 176.37108 * 17 15 14 33 33 H 1.08995 * 109.47350 * 296.37582 * 17 15 14 34 34 H 1.08994 * 112.84623 * 290.33786 * 18 15 14 35 35 H 1.08993 * 113.61827 * 334.56734 * 19 18 15 36 36 H 1.08997 * 113.61199 * 105.47161 * 19 18 15 37 37 H 1.08994 * 113.53829 * 270.81788 * 20 19 18 38 38 H 1.09004 * 113.73994 * 139.94344 * 20 19 18 39 39 H 1.08998 * 113.61707 * 220.09203 * 21 20 19 40 40 H 1.08997 * 113.61750 * 89.18405 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1483 -2.2855 3.6039 10 1 3.1472 -0.1856 4.8162 11 1 1.1677 -1.5865 4.8165 12 7 2.0198 -0.6925 -1.1994 13 6 1.4344 -2.0355 -1.3077 14 6 1.7530 0.0971 -2.4091 15 6 2.7487 1.2560 -2.4914 16 1 2.6947 1.8471 -1.5772 17 6 4.1648 0.7008 -2.6569 18 6 2.4040 2.1402 -3.6916 19 6 2.9793 3.5629 -3.5939 20 6 1.6443 4.0564 -4.1809 21 6 1.0085 2.7803 -3.6046 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7081 1.1610 3.4844 26 1 0.3611 -1.9513 -1.4786 27 1 1.8944 -2.5662 -2.1413 28 1 1.6132 -2.5854 -0.3838 29 1 1.8608 -0.5377 -3.2885 30 1 0.7381 0.4925 -2.3684 31 1 4.2024 0.0575 -3.5360 32 1 4.8663 1.5259 -2.7802 33 1 4.4344 0.1236 -1.7725 34 1 2.6023 1.6536 -4.6465 35 1 3.1549 3.8935 -2.5703 36 1 3.8345 3.7339 -4.2476 37 1 1.6355 4.0950 -5.2701 38 1 1.2754 4.9737 -3.7218 39 1 0.2751 2.3204 -4.2669 40 1 0.6444 2.8965 -2.5838 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398640279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:34 Heat of formation + Delta-G solvation = -6.731594 kcal Electronic energy + Delta-G solvation = -16589.429393 eV Core-core repulsion = 14210.712855 eV Total energy + Delta-G solvation = -2378.716537 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32963 -38.61073 -35.04990 -33.60591 -30.52021 -28.10191 -27.21210 -26.56034 -26.10951 -24.72810 -22.04272 -20.38401 -20.12794 -18.22882 -16.98581 -16.43070 -16.33356 -15.79432 -15.45817 -14.90313 -14.59899 -14.10352 -13.67221 -13.40499 -13.26916 -13.22742 -13.12309 -12.74119 -12.60669 -12.59134 -12.43903 -12.26988 -12.07634 -11.94167 -11.76452 -11.40217 -11.19042 -10.96305 -10.87154 -10.66130 -10.45175 -8.74361 -8.09084 -6.19212 1.40648 1.42619 1.54421 2.43786 3.19872 3.42848 3.80039 3.83331 3.94294 4.04681 4.23357 4.50684 4.56331 4.65697 4.72645 4.74335 4.77451 4.84714 4.88510 4.93841 4.95049 5.01654 5.05345 5.11063 5.12602 5.19736 5.22592 5.30085 5.42084 5.52187 5.55471 5.62200 5.73886 5.77926 5.85128 6.27247 6.55975 6.82997 6.95944 7.50111 8.97182 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032011 B = 0.007228 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.476277 B = 3872.687508 C = 4044.153107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.220 3.780 3 H 0.006 0.994 4 C -0.511 4.511 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.543 5.543 13 C 0.039 3.961 14 C 0.062 3.938 15 C -0.071 4.071 16 H 0.036 0.964 17 C -0.123 4.123 18 C -0.099 4.099 19 C -0.135 4.135 20 C -0.132 4.132 21 C -0.144 4.144 22 H 0.022 0.978 23 H 0.059 0.941 24 H 0.031 0.969 25 H 0.260 0.740 26 H 0.014 0.986 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.021 0.979 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 2.183 -13.132 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.112 3.888 3 H 0.024 0.976 4 C -0.549 4.549 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.266 5.266 13 C -0.110 4.110 14 C -0.067 4.067 15 C -0.090 4.090 16 H 0.054 0.946 17 C -0.180 4.180 18 C -0.117 4.117 19 C -0.172 4.172 20 C -0.170 4.170 21 C -0.181 4.181 22 H 0.040 0.960 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.455 2.225 -12.953 13.370 hybrid contribution -0.890 -0.180 1.300 1.586 sum 1.565 2.045 -11.653 11.934 Atomic orbital electron populations 1.22194 1.00874 0.98997 0.99630 1.18985 0.89468 0.92958 0.87362 0.97609 1.21440 1.30171 1.12238 0.91063 0.92727 1.25688 0.95528 0.95854 1.01813 1.70030 1.38139 1.24335 1.23769 0.85518 0.78053 0.78663 0.79457 1.19231 1.20821 1.20698 1.62223 1.58817 1.02995 1.02610 1.22196 0.96217 0.91130 1.01409 1.22116 0.96614 0.95229 0.92694 1.21020 0.95848 0.95299 0.96853 0.94575 1.21532 0.95136 1.00096 1.01271 1.22577 0.96254 0.94666 0.98251 1.22927 0.97826 0.95652 1.00823 1.22829 0.96040 0.96934 1.01159 1.22902 0.96923 0.97977 1.00317 0.95958 0.92264 0.95024 0.93129 0.96726 0.91068 0.92840 0.90730 0.96074 0.92135 0.92847 0.94113 0.87852 0.91874 0.90173 0.88463 0.91687 0.91088 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.88 8.25 71.98 0.59 -7.29 16 2 C 0.22 11.31 2.22 44.17 0.10 11.41 16 3 H 0.01 0.35 6.58 -2.39 -0.02 0.33 16 4 C -0.51 -28.61 7.88 25.60 0.20 -28.41 16 5 H 0.05 3.07 7.14 -2.91 -0.02 3.05 16 6 C 0.01 0.51 5.30 84.65 0.45 0.96 16 7 N -0.92 -54.03 11.32 21.45 0.24 -53.78 16 8 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 N -0.54 -23.38 4.12 -901.43 -3.72 -27.09 16 13 C 0.04 1.51 8.57 127.69 1.09 2.61 16 14 C 0.06 2.21 4.18 86.31 0.36 2.57 16 15 C -0.07 -2.37 2.17 -10.79 -0.02 -2.40 16 16 H 0.04 1.48 6.52 -2.38 -0.02 1.46 16 17 C -0.12 -3.80 9.01 71.98 0.65 -3.15 16 18 C -0.10 -2.56 3.11 -10.27 -0.03 -2.59 16 19 C -0.13 -3.20 7.60 31.18 0.24 -2.96 16 20 C -0.13 -2.83 8.09 31.18 0.25 -2.58 16 21 C -0.14 -3.76 6.67 31.12 0.21 -3.55 16 22 H 0.02 1.00 6.45 -2.39 -0.02 0.98 16 23 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 24 H 0.03 1.52 6.46 -2.39 -0.02 1.50 16 25 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 26 H 0.01 0.55 6.60 -2.38 -0.02 0.53 16 27 H 0.07 2.31 8.11 -2.39 -0.02 2.29 16 28 H 0.05 2.26 6.71 -2.39 -0.02 2.25 16 29 H 0.07 2.33 7.92 -2.39 -0.02 2.31 16 30 H 0.02 0.80 5.39 -2.39 -0.01 0.79 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.47 8.12 -2.38 -0.02 1.45 16 33 H 0.04 1.49 7.83 -2.39 -0.02 1.47 16 34 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.06 1.72 7.99 -2.39 -0.02 1.70 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -60.12 302.48 3.62 -56.50 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.98 Total: 13.20 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 4.09 Total: -35.38 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -3.47 Total: -80.88 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -60.12 3.62 -56.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398640279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.773 kcal (2) G-P(sol) polarization free energy of solvation -60.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds