Wall clock time and date at job start Mon Mar 30 2020 02:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.52999 * 109.47269 * 120.00547 * 2 1 3 5 5 N 1.46905 * 109.46969 * 294.99537 * 4 2 1 6 6 C 1.46898 * 111.00288 * 293.95841 * 5 4 2 7 7 C 1.46898 * 110.99999 * 169.99827 * 5 4 2 8 8 H 1.09003 * 109.47386 * 310.00388 * 7 5 4 9 9 C 1.53003 * 109.46828 * 70.00620 * 7 5 4 10 10 C 1.50705 * 109.47108 * 190.00218 * 7 5 4 11 11 H 1.08004 * 119.99888 * 0.02562 * 10 7 5 12 12 C 1.37872 * 120.00247 * 180.02562 * 10 7 5 13 13 N 1.31522 * 119.99764 * 0.02562 * 12 10 7 14 14 Si 1.86801 * 120.00138 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.46947 * 90.00019 * 14 12 10 16 16 H 1.48498 * 109.47036 * 209.99876 * 14 12 10 17 17 H 1.48496 * 109.46884 * 329.99933 * 14 12 10 18 18 C 1.53006 * 109.47164 * 240.00051 * 2 1 3 19 19 C 1.53772 * 113.61475 * 157.49598 * 18 2 1 20 20 C 1.53781 * 87.08354 * 220.02318 * 19 18 2 21 21 C 1.53781 * 113.61135 * 59.99693 * 18 2 1 22 22 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 24 24 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 25 25 H 1.08997 * 109.47756 * 54.99411 * 4 2 1 26 26 H 1.09001 * 109.47317 * 175.00294 * 4 2 1 27 27 H 1.09005 * 109.47209 * 59.99444 * 6 5 4 28 28 H 1.08996 * 109.47318 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.46918 * 299.99718 * 6 5 4 30 30 H 1.09002 * 109.46760 * 299.99314 * 9 7 5 31 31 H 1.08994 * 109.47063 * 59.99812 * 9 7 5 32 32 H 1.09004 * 109.46836 * 179.97438 * 9 7 5 33 33 H 0.96997 * 119.99982 * 180.02562 * 13 12 10 34 34 H 1.09000 * 112.84759 * 288.80595 * 18 2 1 35 35 H 1.09000 * 113.61922 * 334.57064 * 19 18 2 36 36 H 1.08999 * 113.61689 * 105.47008 * 19 18 2 37 37 H 1.09005 * 113.61134 * 270.88438 * 20 19 18 38 38 H 1.08994 * 113.69575 * 139.99585 * 20 19 18 39 39 H 1.09000 * 113.61578 * 254.52872 * 21 18 2 40 40 H 1.09007 * 113.61310 * 25.35225 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6515 0.0373 2.4456 6 6 2.3341 1.3373 2.4895 7 6 1.9125 -0.7359 3.6671 8 1 1.4857 -1.7336 3.5637 9 6 3.4225 -0.8474 3.8871 10 6 1.2831 -0.0400 4.8463 11 1 0.7428 0.8841 4.7027 12 6 1.3969 -0.5829 6.1085 13 7 2.0553 -1.7079 6.2835 14 14 0.6161 0.2794 7.5701 15 1 -0.7720 -0.2152 7.7529 16 1 1.4081 -0.0050 8.7937 17 1 0.5917 1.7439 7.3256 18 6 2.0400 -0.7213 -1.2493 19 6 3.4725 -0.3277 -1.6461 20 6 2.9921 -0.3572 -3.1066 21 6 1.5810 -0.0723 -2.5657 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 1.6054 -1.7199 1.2951 26 1 3.1263 -0.7995 1.2055 27 1 2.0679 1.9175 1.6059 28 1 2.0282 1.8784 3.3848 29 1 3.4127 1.1808 2.5099 30 1 3.8777 -1.3508 3.0342 31 1 3.8492 0.1503 3.9904 32 1 3.6162 -1.4207 4.7937 33 1 2.1351 -2.0901 7.1714 34 1 1.8758 -1.7982 -1.2129 35 1 3.7639 0.6648 -1.3023 36 1 4.2151 -1.0914 -1.4152 37 1 3.0896 -1.3349 -3.5787 38 1 3.3969 0.4498 -3.7173 39 1 0.7965 -0.6300 -3.0772 40 1 1.3537 0.9898 -2.4730 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398640280.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:35 Heat of formation + Delta-G solvation = -6.676011 kcal Electronic energy + Delta-G solvation = -16356.343818 eV Core-core repulsion = 13977.629690 eV Total energy + Delta-G solvation = -2378.714127 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.33071 -38.66175 -35.20645 -33.52326 -30.32219 -28.15639 -27.24054 -26.82893 -25.98479 -24.82305 -21.73848 -20.52408 -20.20119 -18.20715 -17.09907 -16.37195 -16.27708 -15.74689 -15.35946 -15.16467 -14.49540 -14.19853 -13.83356 -13.42880 -13.27858 -13.22676 -12.95216 -12.82058 -12.58538 -12.46506 -12.42221 -12.30163 -12.08036 -11.99095 -11.71840 -11.42794 -11.22921 -11.01071 -10.88702 -10.62788 -10.48033 -8.77817 -8.09272 -6.20133 1.43165 1.43667 1.54149 2.44031 3.19602 3.41589 3.78956 3.81873 3.95234 4.06861 4.17429 4.50164 4.53760 4.62863 4.70491 4.71976 4.78248 4.87071 4.93166 4.93477 4.94934 4.98740 5.03138 5.13309 5.14791 5.18235 5.21605 5.26706 5.40986 5.52083 5.56039 5.60125 5.71684 5.75902 5.81681 6.23858 6.53257 6.79821 6.94117 7.49270 8.96955 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.052704 B = 0.005858 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.144861 B = 4778.436321 C = 4971.959448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.067 4.067 3 H 0.069 0.931 4 C 0.065 3.935 5 N -0.540 5.540 6 C 0.040 3.960 7 C 0.214 3.786 8 H 0.000 1.000 9 C -0.156 4.156 10 C -0.511 4.511 11 H 0.056 0.944 12 C 0.009 3.991 13 N -0.923 5.923 14 Si 0.960 3.040 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.268 1.268 18 C -0.108 4.108 19 C -0.141 4.141 20 C -0.135 4.135 21 C -0.127 4.127 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.018 0.982 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.014 0.986 30 H 0.020 0.980 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.260 0.740 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 3.770 -15.748 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 H 0.087 0.913 4 C -0.063 4.063 5 N -0.263 5.263 6 C -0.108 4.108 7 C 0.107 3.893 8 H 0.018 0.982 9 C -0.215 4.215 10 C -0.549 4.549 11 H 0.074 0.926 12 C -0.189 4.189 13 N -0.564 5.564 14 Si 0.786 3.214 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.193 1.193 18 C -0.127 4.127 19 C -0.179 4.179 20 C -0.172 4.172 21 C -0.165 4.165 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.459 3.739 -15.633 16.081 hybrid contribution 0.663 -0.212 1.334 1.504 sum 1.121 3.528 -14.299 14.771 Atomic orbital electron populations 1.21591 0.94739 1.01061 1.01189 1.21082 0.96375 0.98830 0.92282 0.91304 1.22083 0.96719 0.96746 0.90795 1.62212 1.57528 1.04302 1.02241 1.22204 0.95324 0.91856 1.01421 1.19059 0.91015 0.92064 0.87196 0.98159 1.22181 0.99690 0.99403 1.00222 1.21378 1.32931 1.08552 0.92086 0.92569 1.25715 0.95971 0.95730 1.01493 1.70025 1.42946 1.20357 1.23029 0.85524 0.78275 0.79032 0.78588 1.20322 1.21001 1.19258 1.22579 0.96631 0.99617 0.93887 1.22973 0.96244 1.01420 0.97256 1.22785 0.96452 1.02330 0.95643 1.22875 0.97152 1.01073 0.95364 0.93927 0.93592 0.91740 0.93393 0.96342 0.90937 0.92932 0.96794 0.96086 0.94827 0.92168 0.93056 0.89998 0.90512 0.92296 0.89779 0.90734 0.91044 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 8.88 71.98 0.64 -3.01 16 2 C -0.07 -1.91 2.06 -10.79 -0.02 -1.93 16 3 H 0.07 1.94 6.14 -2.39 -0.01 1.93 16 4 C 0.06 2.38 3.91 86.30 0.34 2.72 16 5 N -0.54 -23.38 4.16 -901.44 -3.75 -27.12 16 6 C 0.04 1.57 8.46 127.69 1.08 2.65 16 7 C 0.21 11.16 2.31 44.17 0.10 11.27 16 8 H 0.00 0.03 7.93 -2.39 -0.02 0.01 16 9 C -0.16 -7.80 8.22 71.98 0.59 -7.21 16 10 C -0.51 -28.65 7.91 25.60 0.20 -28.45 16 11 H 0.06 3.15 7.12 -2.91 -0.02 3.13 16 12 C 0.01 0.50 5.30 84.65 0.45 0.95 16 13 N -0.92 -54.09 11.32 21.45 0.24 -53.84 16 14 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 C -0.11 -2.53 3.13 -10.27 -0.03 -2.56 16 19 C -0.14 -3.03 7.63 31.12 0.24 -2.79 16 20 C -0.13 -2.32 8.08 31.12 0.25 -2.07 16 21 C -0.13 -2.37 6.68 31.12 0.21 -2.16 16 22 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.04 1.52 7.75 -2.39 -0.02 1.50 16 24 H 0.06 1.50 7.45 -2.39 -0.02 1.48 16 25 H 0.05 1.87 7.93 -2.39 -0.02 1.85 16 26 H 0.02 0.69 7.06 -2.39 -0.02 0.67 16 27 H 0.07 2.38 6.37 -2.38 -0.02 2.36 16 28 H 0.05 2.23 6.76 -2.39 -0.02 2.21 16 29 H 0.01 0.53 6.46 -2.39 -0.02 0.52 16 30 H 0.02 0.94 6.91 -2.39 -0.02 0.92 16 31 H 0.03 1.61 6.42 -2.39 -0.02 1.60 16 32 H 0.06 3.35 6.07 -2.38 -0.01 3.33 16 33 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 1.67 7.96 -2.39 -0.02 1.65 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.50 8.10 -2.38 -0.02 1.48 16 Total: -1.00 -59.61 302.48 3.54 -56.07 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.98 Total: 11.10 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 4.04 Total: -32.59 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -3.50 Total: -80.97 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -59.61 3.54 -56.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398640280.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.393 kcal (2) G-P(sol) polarization free energy of solvation -59.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds