Wall clock time and date at job start Mon Mar 30 2020 02:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46507 * 2 1 4 4 C 1.50702 * 109.47024 * 240.00371 * 2 1 3 5 5 H 1.07995 * 119.99823 * 304.87502 * 4 2 1 6 6 C 1.37877 * 119.99962 * 124.87606 * 4 2 1 7 7 N 1.31508 * 120.00270 * 179.40734 * 6 4 2 8 8 Si 1.86807 * 119.99966 * 359.40707 * 6 4 2 9 9 H 1.48496 * 109.46853 * 84.66430 * 8 6 4 10 10 H 1.48496 * 109.46725 * 204.65875 * 8 6 4 11 11 H 1.48495 * 109.47250 * 324.66478 * 8 6 4 12 12 N 1.46892 * 109.47247 * 120.00088 * 2 1 3 13 13 C 1.46899 * 111.00007 * 58.95362 * 12 2 1 14 14 C 1.46908 * 111.00248 * 295.00046 * 12 2 1 15 15 C 1.52996 * 109.46892 * 288.04740 * 14 12 2 16 16 H 1.08999 * 109.47630 * 57.13661 * 15 14 12 17 17 C 1.52999 * 109.47393 * 297.13250 * 15 14 12 18 18 C 1.53001 * 109.46743 * 177.13747 * 15 14 12 19 19 C 1.53774 * 113.61600 * 299.99619 * 18 15 14 20 20 C 1.53777 * 87.08488 * 220.02185 * 19 18 15 21 21 C 1.53782 * 87.17179 * 25.39183 * 20 19 18 22 22 H 1.09002 * 109.47242 * 63.98791 * 1 2 3 23 23 H 1.08998 * 109.46881 * 183.99425 * 1 2 3 24 24 H 1.09000 * 109.47290 * 303.98940 * 1 2 3 25 25 H 0.97000 * 120.00578 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.47601 * 290.49312 * 13 12 2 27 27 H 1.08998 * 109.46977 * 50.50186 * 13 12 2 28 28 H 1.09005 * 109.47256 * 170.49136 * 13 12 2 29 29 H 1.08996 * 109.46985 * 168.04587 * 14 12 2 30 30 H 1.09001 * 109.46753 * 48.04477 * 14 12 2 31 31 H 1.09008 * 109.46859 * 64.91227 * 17 15 14 32 32 H 1.09001 * 109.47404 * 184.91273 * 17 15 14 33 33 H 1.09006 * 109.47110 * 304.92134 * 17 15 14 34 34 H 1.08997 * 112.85488 * 71.19591 * 18 15 14 35 35 H 1.09004 * 113.61721 * 105.47239 * 19 18 15 36 36 H 1.09000 * 113.61334 * 334.57054 * 19 18 15 37 37 H 1.09001 * 113.61811 * 139.98079 * 20 19 18 38 38 H 1.09006 * 113.61512 * 270.80012 * 20 19 18 39 39 H 1.08994 * 113.61593 * 89.16245 * 21 20 19 40 40 H 1.09007 * 113.61042 * 220.05993 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 1.7081 -1.7185 -1.4422 6 6 2.9059 -0.0731 -2.0861 7 7 3.3533 -0.6971 -3.1537 8 14 3.4537 1.6767 -1.7287 9 1 4.6036 1.6532 -0.7893 10 1 3.8626 2.3357 -2.9951 11 1 2.3307 2.4320 -1.1176 12 7 2.0197 -0.6925 1.1993 13 6 1.5284 -2.0761 1.2459 14 6 1.6488 0.0391 2.4181 15 6 2.4890 1.3134 2.5236 16 1 2.3451 1.9187 1.6287 17 6 3.9670 0.9403 2.6547 18 6 2.0533 2.1110 3.7544 19 6 0.5761 2.5370 3.7212 20 6 1.0320 3.8816 4.3117 21 6 2.4058 3.6077 3.6773 22 1 -0.3634 0.4507 -0.9236 23 1 -0.3633 -1.0252 0.0716 24 1 -0.3634 0.5745 0.8521 25 1 3.9682 -0.2490 -3.7554 26 1 0.4547 -2.0743 1.4334 27 1 1.7301 -2.5654 0.2930 28 1 2.0360 -2.6152 2.0457 29 1 1.8316 -0.5899 3.2892 30 1 0.5921 0.3032 2.3758 31 1 4.3001 0.4485 1.7407 32 1 4.5565 1.8426 2.8173 33 1 4.0975 0.2638 3.4994 34 1 2.3510 1.6401 4.6912 35 1 -0.0602 1.9590 4.3915 36 1 0.1677 2.6185 2.7139 37 1 0.5179 4.7428 3.8849 38 1 1.0494 3.8965 5.4016 39 1 2.4986 3.9826 2.6581 40 1 3.2446 3.8930 4.3123 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398640281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:37 Heat of formation + Delta-G solvation = 9.758838 kcal Electronic energy + Delta-G solvation = -16807.608695 eV Core-core repulsion = 14429.607236 eV Total energy + Delta-G solvation = -2378.001459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.23602 -37.15397 -33.14504 -32.00261 -29.44479 -26.73685 -25.37262 -25.35748 -25.09546 -22.98069 -20.55679 -19.31568 -18.42096 -16.99332 -15.37098 -15.18546 -14.98611 -14.09732 -13.99780 -13.25992 -13.17541 -12.58780 -12.41171 -12.30099 -12.14537 -11.96073 -11.59626 -11.50418 -11.35445 -11.02549 -10.85499 -10.62389 -10.60093 -10.45948 -10.19438 -9.86033 -9.69418 -9.66584 -9.53142 -8.80963 -8.56807 -7.10469 -6.04577 -4.04791 3.33590 3.39978 3.41200 4.45599 4.66176 4.77668 4.82286 4.94222 5.04071 5.42856 5.49997 5.68524 5.76292 5.83502 5.86906 5.91525 5.95337 6.04238 6.10767 6.15119 6.18277 6.23044 6.29839 6.37216 6.45243 6.52352 6.55562 6.57050 6.67171 6.84309 6.87445 6.96353 7.07001 7.18663 7.69342 8.15241 8.34469 8.66856 8.99067 9.59219 11.08217 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026417 B = 0.009662 C = 0.008455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.657594 B = 2897.160920 C = 3310.926848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.167 3.833 3 H 0.051 0.949 4 C -0.494 4.494 5 H 0.073 0.927 6 C 0.076 3.924 7 N -0.900 5.900 8 Si 0.881 3.119 9 H -0.270 1.270 10 H -0.293 1.293 11 H -0.269 1.269 12 N -0.529 5.529 13 C 0.036 3.964 14 C 0.053 3.947 15 C -0.078 4.078 16 H 0.067 0.933 17 C -0.134 4.134 18 C -0.102 4.102 19 C -0.137 4.137 20 C -0.144 4.144 21 C -0.137 4.137 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.025 0.975 25 H 0.263 0.737 26 H 0.008 0.992 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 6.350 13.626 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.061 3.939 3 H 0.069 0.931 4 C -0.533 4.533 5 H 0.091 0.909 6 C -0.126 4.126 7 N -0.538 5.538 8 Si 0.709 3.291 9 H -0.196 1.196 10 H -0.220 1.220 11 H -0.195 1.195 12 N -0.253 5.253 13 C -0.113 4.113 14 C -0.075 4.075 15 C -0.096 4.096 16 H 0.086 0.914 17 C -0.191 4.191 18 C -0.121 4.121 19 C -0.174 4.174 20 C -0.181 4.181 21 C -0.174 4.174 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.026 0.974 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.504 6.341 13.431 15.062 hybrid contribution -0.569 0.915 0.142 1.087 sum -3.073 7.256 13.573 15.695 Atomic orbital electron populations 1.22474 1.01199 1.00083 0.99321 1.19919 0.89478 0.95577 0.88899 0.93084 1.20870 1.26562 1.02221 1.03629 0.90887 1.25050 0.95033 0.97758 0.94786 1.69895 1.32688 1.37559 1.13663 0.86825 0.79514 0.85420 0.77339 1.19557 1.21980 1.19505 1.62720 1.59339 1.01673 1.01550 1.22177 0.95670 0.91193 1.02216 1.22135 0.96506 0.94726 0.94148 1.21108 0.96009 0.96067 0.96465 0.91434 1.21651 0.95041 0.99851 1.02549 1.22606 0.95751 0.94824 0.98946 1.22920 0.96744 0.96548 1.01234 1.22812 0.97518 0.97862 0.99916 1.22976 0.96794 0.96605 1.01068 0.93057 0.93642 0.95631 0.92688 0.97371 0.90257 0.93900 0.92711 0.95296 0.91002 0.94263 0.93609 0.89687 0.91941 0.90116 0.91911 0.90640 0.90238 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.62 8.53 37.16 0.32 -3.30 16 2 C 0.17 3.92 2.20 -68.87 -0.15 3.77 16 3 H 0.05 1.24 2.87 -51.93 -0.15 1.09 16 4 C -0.49 -13.71 8.21 -34.44 -0.28 -14.00 16 5 H 0.07 2.19 6.98 -52.49 -0.37 1.83 16 6 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 7 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 8 Si 0.88 21.90 27.22 -169.99 -4.63 17.27 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.27 -6.42 6.41 56.52 0.36 -6.06 16 12 N -0.53 -11.19 4.15 -236.28 -0.98 -12.17 16 13 C 0.04 0.71 8.68 60.06 0.52 1.23 16 14 C 0.05 0.94 4.10 -3.82 -0.02 0.93 16 15 C -0.08 -1.30 2.14 -90.62 -0.19 -1.49 16 16 H 0.07 1.29 6.38 -51.93 -0.33 0.96 16 17 C -0.13 -2.24 8.99 37.16 0.33 -1.91 16 18 C -0.10 -1.38 3.13 -89.72 -0.28 -1.66 16 19 C -0.14 -1.73 6.63 -25.92 -0.17 -1.90 16 20 C -0.14 -1.60 8.08 -25.92 -0.21 -1.81 16 21 C -0.14 -1.70 7.64 -25.82 -0.20 -1.90 16 22 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.04 0.93 6.39 -51.93 -0.33 0.60 16 24 H 0.02 0.48 6.48 -51.93 -0.34 0.14 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.01 0.15 6.73 -51.93 -0.35 -0.20 16 27 H 0.08 1.74 6.22 -51.93 -0.32 1.42 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.90 8.00 -51.93 -0.42 0.48 16 30 H 0.03 0.51 5.26 -51.93 -0.27 0.24 16 31 H 0.07 1.43 7.83 -51.92 -0.41 1.02 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.06 7.97 -51.93 -0.41 0.65 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 300.55 15.07 4.53 4.53 Total: -1.00 -28.90 300.55 -7.83 -36.72 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.10 Total: 0.24 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -0.43 Total: -19.94 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: -0.21 Total: -38.82 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.63 Total: 17.27 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.90 -7.83 -36.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398640281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.482 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds