Wall clock time and date at job start Mon Mar 30 2020 02:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46507 * 2 1 4 4 C 1.50702 * 109.47024 * 240.00371 * 2 1 3 5 5 H 1.07995 * 119.99823 * 304.87502 * 4 2 1 6 6 C 1.37877 * 119.99962 * 124.87606 * 4 2 1 7 7 N 1.31508 * 120.00270 * 179.40734 * 6 4 2 8 8 Si 1.86807 * 119.99966 * 359.40707 * 6 4 2 9 9 H 1.48496 * 109.46853 * 84.66430 * 8 6 4 10 10 H 1.48496 * 109.46725 * 204.65875 * 8 6 4 11 11 H 1.48495 * 109.47250 * 324.66478 * 8 6 4 12 12 N 1.46892 * 109.47247 * 120.00088 * 2 1 3 13 13 C 1.46899 * 111.00007 * 58.95362 * 12 2 1 14 14 C 1.46908 * 111.00248 * 295.00046 * 12 2 1 15 15 C 1.52996 * 109.46892 * 288.04740 * 14 12 2 16 16 H 1.08999 * 109.47630 * 57.13661 * 15 14 12 17 17 C 1.52999 * 109.47393 * 297.13250 * 15 14 12 18 18 C 1.53001 * 109.46743 * 177.13747 * 15 14 12 19 19 C 1.53774 * 113.61600 * 299.99619 * 18 15 14 20 20 C 1.53777 * 87.08488 * 220.02185 * 19 18 15 21 21 C 1.53782 * 87.17179 * 25.39183 * 20 19 18 22 22 H 1.09002 * 109.47242 * 63.98791 * 1 2 3 23 23 H 1.08998 * 109.46881 * 183.99425 * 1 2 3 24 24 H 1.09000 * 109.47290 * 303.98940 * 1 2 3 25 25 H 0.97000 * 120.00578 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.47601 * 290.49312 * 13 12 2 27 27 H 1.08998 * 109.46977 * 50.50186 * 13 12 2 28 28 H 1.09005 * 109.47256 * 170.49136 * 13 12 2 29 29 H 1.08996 * 109.46985 * 168.04587 * 14 12 2 30 30 H 1.09001 * 109.46753 * 48.04477 * 14 12 2 31 31 H 1.09008 * 109.46859 * 64.91227 * 17 15 14 32 32 H 1.09001 * 109.47404 * 184.91273 * 17 15 14 33 33 H 1.09006 * 109.47110 * 304.92134 * 17 15 14 34 34 H 1.08997 * 112.85488 * 71.19591 * 18 15 14 35 35 H 1.09004 * 113.61721 * 105.47239 * 19 18 15 36 36 H 1.09000 * 113.61334 * 334.57054 * 19 18 15 37 37 H 1.09001 * 113.61811 * 139.98079 * 20 19 18 38 38 H 1.09006 * 113.61512 * 270.80012 * 20 19 18 39 39 H 1.08994 * 113.61593 * 89.16245 * 21 20 19 40 40 H 1.09007 * 113.61042 * 220.05993 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 1.7081 -1.7185 -1.4422 6 6 2.9059 -0.0731 -2.0861 7 7 3.3533 -0.6971 -3.1537 8 14 3.4537 1.6767 -1.7287 9 1 4.6036 1.6532 -0.7893 10 1 3.8626 2.3357 -2.9951 11 1 2.3307 2.4320 -1.1176 12 7 2.0197 -0.6925 1.1993 13 6 1.5284 -2.0761 1.2459 14 6 1.6488 0.0391 2.4181 15 6 2.4890 1.3134 2.5236 16 1 2.3451 1.9187 1.6287 17 6 3.9670 0.9403 2.6547 18 6 2.0533 2.1110 3.7544 19 6 0.5761 2.5370 3.7212 20 6 1.0320 3.8816 4.3117 21 6 2.4058 3.6077 3.6773 22 1 -0.3634 0.4507 -0.9236 23 1 -0.3633 -1.0252 0.0716 24 1 -0.3634 0.5745 0.8521 25 1 3.9682 -0.2490 -3.7554 26 1 0.4547 -2.0743 1.4334 27 1 1.7301 -2.5654 0.2930 28 1 2.0360 -2.6152 2.0457 29 1 1.8316 -0.5899 3.2892 30 1 0.5921 0.3032 2.3758 31 1 4.3001 0.4485 1.7407 32 1 4.5565 1.8426 2.8173 33 1 4.0975 0.2638 3.4994 34 1 2.3510 1.6401 4.6912 35 1 -0.0602 1.9590 4.3915 36 1 0.1677 2.6185 2.7139 37 1 0.5179 4.7428 3.8849 38 1 1.0494 3.8965 5.4016 39 1 2.4986 3.9826 2.6581 40 1 3.2446 3.8930 4.3123 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398640281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:37 Heat of formation + Delta-G solvation = -7.193219 kcal Electronic energy + Delta-G solvation = -16808.343791 eV Core-core repulsion = 14429.607236 eV Total energy + Delta-G solvation = -2378.736555 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39473 -38.67377 -34.88098 -33.76010 -31.23595 -28.16487 -27.28086 -26.58726 -26.12043 -24.56949 -21.97041 -20.36693 -20.08021 -19.04291 -16.86231 -16.43874 -16.34195 -15.82388 -15.47756 -14.82997 -14.67933 -14.64002 -13.72061 -13.56454 -13.41478 -13.28822 -13.25057 -12.99456 -12.73948 -12.65367 -12.41350 -12.38025 -11.93628 -11.81150 -11.63206 -11.42520 -11.22099 -10.93764 -10.89029 -10.77113 -10.63818 -8.74713 -8.26400 -6.29821 1.32489 1.37332 1.43118 2.35652 2.97828 3.52731 3.79030 3.81160 3.94642 4.03918 4.18560 4.42439 4.50214 4.53034 4.59762 4.68108 4.68698 4.76257 4.86412 4.89438 4.90074 4.92794 4.99238 5.02579 5.10170 5.12571 5.19143 5.24814 5.30043 5.37348 5.42998 5.50587 5.56235 5.67735 5.75908 6.18233 6.60127 6.69839 6.86430 7.37133 8.90069 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026417 B = 0.009662 C = 0.008455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.657594 B = 2897.160920 C = 3310.926848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.047 0.953 4 C -0.493 4.493 5 H 0.035 0.965 6 C 0.018 3.982 7 N -0.949 5.949 8 Si 0.940 3.060 9 H -0.266 1.266 10 H -0.291 1.291 11 H -0.252 1.252 12 N -0.547 5.547 13 C 0.041 3.959 14 C 0.057 3.943 15 C -0.077 4.077 16 H 0.040 0.960 17 C -0.130 4.130 18 C -0.100 4.100 19 C -0.140 4.140 20 C -0.133 4.133 21 C -0.140 4.140 22 H 0.043 0.957 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.264 0.736 26 H 0.022 0.978 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 7.981 16.588 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.065 3.935 3 H 0.064 0.936 4 C -0.532 4.532 5 H 0.053 0.947 6 C -0.179 4.179 7 N -0.590 5.590 8 Si 0.766 3.234 9 H -0.191 1.191 10 H -0.218 1.218 11 H -0.176 1.176 12 N -0.270 5.270 13 C -0.108 4.108 14 C -0.071 4.071 15 C -0.096 4.096 16 H 0.059 0.941 17 C -0.187 4.187 18 C -0.118 4.118 19 C -0.178 4.178 20 C -0.170 4.170 21 C -0.178 4.178 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.101 7.972 16.416 18.511 hybrid contribution -0.417 0.301 -0.739 0.900 sum -3.518 8.272 15.677 18.072 Atomic orbital electron populations 1.22343 0.99335 1.00586 1.00162 1.19724 0.90782 0.94752 0.88237 0.93563 1.21136 1.25867 1.00802 1.05370 0.94676 1.25847 0.95491 1.01947 0.94655 1.70037 1.34246 1.39537 1.15145 0.85862 0.79614 0.80710 0.77244 1.19136 1.21761 1.17643 1.62480 1.60038 1.02350 1.02162 1.22117 0.96855 0.90527 1.01262 1.22197 0.96993 0.95088 0.92793 1.21092 0.95793 0.95555 0.97114 0.94121 1.21596 0.95356 1.00478 1.01276 1.22607 0.96478 0.94933 0.97819 1.22918 0.96257 0.97789 1.00811 1.22789 0.96160 0.97124 1.00920 1.22984 0.98267 0.95771 1.00764 0.93830 0.93580 0.92889 0.92702 0.95942 0.93627 0.91498 0.90759 0.94699 0.94723 0.92961 0.91936 0.88007 0.90744 0.91750 0.91461 0.88743 0.91700 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.76 8.53 71.98 0.61 -6.15 16 2 C 0.17 8.00 2.20 44.17 0.10 8.10 16 3 H 0.05 2.21 2.87 -2.38 -0.01 2.20 16 4 C -0.49 -28.14 8.21 25.60 0.21 -27.93 16 5 H 0.03 2.22 6.98 -2.91 -0.02 2.20 16 6 C 0.02 1.07 5.47 84.66 0.46 1.53 16 7 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 8 Si 0.94 45.78 27.22 68.60 1.87 47.65 16 9 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 11 H -0.25 -11.42 6.41 99.48 0.64 -10.79 16 12 N -0.55 -22.54 4.15 -901.47 -3.74 -26.28 16 13 C 0.04 1.57 8.68 127.69 1.11 2.68 16 14 C 0.06 1.86 4.10 86.30 0.35 2.21 16 15 C -0.08 -2.37 2.14 -10.80 -0.02 -2.40 16 16 H 0.04 1.48 6.38 -2.39 -0.02 1.47 16 17 C -0.13 -4.09 8.99 71.98 0.65 -3.44 16 18 C -0.10 -2.33 3.13 -10.21 -0.03 -2.36 16 19 C -0.14 -3.06 6.63 31.12 0.21 -2.86 16 20 C -0.13 -2.44 8.08 31.12 0.25 -2.19 16 21 C -0.14 -3.03 7.64 31.18 0.24 -2.80 16 22 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.05 1.85 6.39 -2.39 -0.02 1.84 16 24 H 0.05 1.87 6.48 -2.39 -0.02 1.85 16 25 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 26 H 0.02 0.79 6.73 -2.39 -0.02 0.77 16 27 H 0.04 2.05 6.22 -2.39 -0.01 2.04 16 28 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.07 2.16 8.00 -2.39 -0.02 2.14 16 30 H 0.03 1.11 5.26 -2.39 -0.01 1.10 16 31 H 0.03 1.33 7.83 -2.38 -0.02 1.31 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.06 1.59 7.97 -2.39 -0.02 1.57 16 40 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -63.71 300.55 3.48 -60.24 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.91 Total: 13.63 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 4.14 Total: -35.60 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -3.44 Total: -85.92 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.87 Total: 47.65 kcal Total: -63.71 3.48 -60.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398640281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.044 kcal (2) G-P(sol) polarization free energy of solvation -63.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds