Wall clock time and date at job start Mon Mar 30 2020 02:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47709 * 2 1 4 4 C 1.50702 * 109.47148 * 120.00241 * 2 1 3 5 5 H 1.08003 * 119.99822 * 119.99434 * 4 2 1 6 6 C 1.37873 * 119.99809 * 299.99998 * 4 2 1 7 7 N 1.31519 * 120.00257 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99969 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46903 * 60.00079 * 8 6 4 10 10 H 1.48504 * 109.47129 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47360 * 299.99835 * 8 6 4 12 12 N 1.46898 * 109.47078 * 239.99831 * 2 1 3 13 13 C 1.46902 * 111.00283 * 306.05159 * 12 2 1 14 14 C 1.46906 * 110.99888 * 70.00120 * 12 2 1 15 15 C 1.53000 * 109.47072 * 170.00122 * 14 12 2 16 16 C 1.53782 * 113.61230 * 274.13727 * 15 14 12 17 17 C 1.53955 * 87.02092 * 220.04934 * 16 15 14 18 18 C 1.53002 * 113.53923 * 270.81368 * 17 16 15 19 19 C 1.52997 * 113.74609 * 139.94133 * 17 16 15 20 20 C 1.53776 * 113.61294 * 176.53019 * 15 14 12 21 21 H 1.08996 * 109.47312 * 59.99719 * 1 2 3 22 22 H 1.08999 * 109.47709 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47114 * 300.00184 * 1 2 3 24 24 H 0.97001 * 120.00059 * 180.02562 * 7 6 4 25 25 H 1.09004 * 109.47457 * 183.95363 * 13 12 2 26 26 H 1.09001 * 109.46615 * 303.95014 * 13 12 2 27 27 H 1.08990 * 109.47358 * 63.94680 * 13 12 2 28 28 H 1.08993 * 109.47164 * 289.99976 * 14 12 2 29 29 H 1.08996 * 109.46920 * 50.00010 * 14 12 2 30 30 H 1.08997 * 112.85113 * 45.33153 * 15 14 12 31 31 H 1.08995 * 113.61711 * 334.56657 * 16 15 14 32 32 H 1.09004 * 113.61850 * 105.47445 * 16 15 14 33 33 H 1.08997 * 109.47268 * 157.48702 * 18 17 16 34 34 H 1.08996 * 109.46946 * 277.49677 * 18 17 16 35 35 H 1.09007 * 109.46838 * 37.49186 * 18 17 16 36 36 H 1.08998 * 109.47534 * 322.40819 * 19 17 16 37 37 H 1.09008 * 109.46890 * 82.40463 * 19 17 16 38 38 H 1.09005 * 109.47216 * 202.40131 * 19 17 16 39 39 H 1.09002 * 113.61750 * 254.52694 * 20 15 14 40 40 H 1.09007 * 113.61749 * 25.43314 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8268 -0.4200 5.2204 11 1 1.8257 -2.5203 4.0077 12 7 2.0196 -0.6925 -1.1994 13 6 1.4341 -2.0355 -1.3079 14 6 1.7528 0.0972 -2.4091 15 6 2.4883 -0.5257 -3.5973 16 6 3.9434 -0.0488 -3.7398 17 6 3.6976 -0.0108 -5.2591 18 6 4.0080 -1.3341 -5.9616 19 6 4.3318 1.1947 -5.9558 20 6 2.2065 0.1794 -4.9345 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7095 1.1617 3.4844 25 1 1.8662 -2.5521 -2.1649 26 1 1.6465 -2.5988 -0.3991 27 1 0.3555 -1.9520 -1.4399 28 1 0.6814 0.1053 -2.6087 29 1 2.1024 1.1188 -2.2604 30 1 2.3775 -1.6090 -3.6430 31 1 4.1260 0.9327 -3.3024 32 1 4.6788 -0.7930 -3.4340 33 1 3.4613 -1.3826 -6.9033 34 1 5.0780 -1.3986 -6.1587 35 1 3.7056 -2.1641 -5.3229 36 1 4.2481 2.0712 -5.3134 37 1 5.3837 0.9882 -6.1534 38 1 3.8155 1.3833 -6.8972 39 1 1.5416 -0.3809 -5.5919 40 1 1.9133 1.2235 -4.8244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528403273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:08 Heat of formation + Delta-G solvation = 9.559915 kcal Electronic energy + Delta-G solvation = -16271.478805 eV Core-core repulsion = 13893.468721 eV Total energy + Delta-G solvation = -2378.010085 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62662 -36.79921 -32.83404 -30.99629 -28.49672 -27.41871 -26.46768 -25.44951 -25.14303 -23.73772 -20.28404 -18.95031 -18.03144 -16.11091 -15.28390 -14.94740 -14.46506 -14.28967 -13.90155 -13.62161 -13.11079 -12.76689 -12.62284 -12.50063 -11.91176 -11.68942 -11.55792 -11.29297 -11.04861 -10.93982 -10.79035 -10.76787 -10.63307 -10.27154 -10.24241 -9.98688 -9.83363 -9.67895 -9.45588 -8.81671 -8.33230 -7.02403 -5.95793 -3.99106 3.35672 3.39607 3.42852 4.45054 4.62007 4.79128 4.89020 5.00664 5.34052 5.35594 5.45602 5.63319 5.65320 5.73135 5.84084 5.92547 5.99769 6.04095 6.05184 6.09968 6.21241 6.22204 6.29911 6.41342 6.47369 6.50932 6.70889 6.73480 6.86945 6.89148 6.97590 7.19678 7.55023 7.77148 7.90622 8.22140 8.46302 8.68791 9.07042 9.65657 11.11327 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045399 B = 0.005764 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.606167 B = 4856.675416 C = 4948.173076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.210 3.790 3 H 0.036 0.964 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.533 5.533 13 C 0.035 3.965 14 C 0.066 3.934 15 C -0.101 4.101 16 C -0.113 4.113 17 C -0.096 4.096 18 C -0.125 4.125 19 C -0.134 4.134 20 C -0.129 4.129 21 H 0.005 0.995 22 H 0.030 0.970 23 H 0.087 0.913 24 H 0.260 0.740 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.014 0.986 28 H 0.022 0.978 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.181 -1.685 -14.324 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.054 0.946 4 C -0.535 4.535 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.256 5.256 13 C -0.114 4.114 14 C -0.063 4.063 15 C -0.120 4.120 16 C -0.150 4.150 17 C -0.096 4.096 18 C -0.183 4.183 19 C -0.191 4.191 20 C -0.167 4.167 21 H 0.024 0.976 22 H 0.049 0.951 23 H 0.105 0.895 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.033 0.967 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.619 -1.616 -14.120 14.666 hybrid contribution -0.704 -0.300 0.837 1.134 sum 2.915 -1.916 -13.283 13.733 Atomic orbital electron populations 1.22391 1.00993 0.99298 1.00333 1.19296 0.89649 0.94412 0.86271 0.94582 1.21089 1.30323 1.12374 0.89703 0.92081 1.24931 0.95316 0.95173 0.98960 1.69882 1.37224 1.23120 1.23380 0.86592 0.79207 0.79588 0.82173 1.20275 1.21451 1.20421 1.62304 1.58658 1.02331 1.02302 1.22236 0.95973 0.92277 1.00912 1.22015 0.96571 0.97284 0.90433 1.22507 0.96150 0.99770 0.93573 1.23014 0.97061 1.01584 0.93338 1.21862 0.96394 0.95366 0.95969 1.21566 1.01002 0.95952 0.99749 1.21717 1.00031 0.97337 0.99996 1.23082 0.95361 1.00817 0.97392 0.97575 0.95092 0.89484 0.93044 0.93957 0.91122 0.96750 0.96019 0.91798 0.89540 0.90265 0.91781 0.92907 0.92736 0.92364 0.92566 0.92988 0.93083 0.92184 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.22 37.15 0.31 -3.93 16 2 C 0.21 5.39 2.31 -68.87 -0.16 5.23 16 3 H 0.04 1.02 7.93 -51.93 -0.41 0.61 16 4 C -0.50 -13.79 7.91 -34.44 -0.27 -14.06 16 5 H 0.06 1.70 7.12 -52.48 -0.37 1.33 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.86 11.32 55.43 0.63 -25.24 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.53 -11.65 4.70 -236.29 -1.11 -12.76 16 13 C 0.03 0.69 8.49 60.07 0.51 1.21 16 14 C 0.07 1.22 4.35 -3.82 -0.02 1.20 16 15 C -0.10 -1.54 3.33 -89.81 -0.30 -1.84 16 16 C -0.11 -1.61 6.76 -25.83 -0.17 -1.78 16 17 C -0.10 -1.14 1.39 -153.60 -0.21 -1.35 16 18 C -0.13 -1.33 9.07 37.16 0.34 -1.00 16 19 C -0.13 -1.41 9.20 37.16 0.34 -1.07 16 20 C -0.13 -1.64 6.79 -25.92 -0.18 -1.82 16 21 H 0.01 0.12 6.91 -51.93 -0.36 -0.24 16 22 H 0.03 0.74 6.41 -51.93 -0.33 0.41 16 23 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.04 0.73 6.30 -51.93 -0.33 0.41 16 26 H 0.07 1.52 6.76 -51.93 -0.35 1.17 16 27 H 0.01 0.28 6.46 -51.93 -0.34 -0.05 16 28 H 0.02 0.41 7.06 -51.93 -0.37 0.05 16 29 H 0.06 1.22 7.66 -51.93 -0.40 0.82 16 30 H 0.09 1.33 5.81 -51.93 -0.30 1.03 16 31 H 0.08 1.18 7.75 -51.93 -0.40 0.78 16 32 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.65 7.34 -51.93 -0.38 0.26 16 36 H 0.06 0.60 7.96 -51.93 -0.41 0.19 16 37 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.08 0.99 8.06 -51.92 -0.42 0.57 16 LS Contribution 302.69 15.07 4.56 4.56 Total: -1.00 -28.13 302.69 -8.01 -36.14 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -7.15 Total: -1.58 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 0.09 Total: -17.71 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.48 Total: -38.00 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.13 -8.01 -36.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528403273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.696 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds