Wall clock time and date at job start Mon Mar 30 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47709 * 2 1 4 4 C 1.50702 * 109.47148 * 120.00241 * 2 1 3 5 5 H 1.08003 * 119.99822 * 119.99434 * 4 2 1 6 6 C 1.37873 * 119.99809 * 299.99998 * 4 2 1 7 7 N 1.31519 * 120.00257 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99969 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46903 * 60.00079 * 8 6 4 10 10 H 1.48504 * 109.47129 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47360 * 299.99835 * 8 6 4 12 12 N 1.46898 * 109.47078 * 239.99831 * 2 1 3 13 13 C 1.46902 * 111.00283 * 306.05159 * 12 2 1 14 14 C 1.46906 * 110.99888 * 70.00120 * 12 2 1 15 15 C 1.53000 * 109.47072 * 170.00122 * 14 12 2 16 16 C 1.53782 * 113.61230 * 274.13727 * 15 14 12 17 17 C 1.53955 * 87.02092 * 220.04934 * 16 15 14 18 18 C 1.53002 * 113.53923 * 270.81368 * 17 16 15 19 19 C 1.52997 * 113.74609 * 139.94133 * 17 16 15 20 20 C 1.53776 * 113.61294 * 176.53019 * 15 14 12 21 21 H 1.08996 * 109.47312 * 59.99719 * 1 2 3 22 22 H 1.08999 * 109.47709 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47114 * 300.00184 * 1 2 3 24 24 H 0.97001 * 120.00059 * 180.02562 * 7 6 4 25 25 H 1.09004 * 109.47457 * 183.95363 * 13 12 2 26 26 H 1.09001 * 109.46615 * 303.95014 * 13 12 2 27 27 H 1.08990 * 109.47358 * 63.94680 * 13 12 2 28 28 H 1.08993 * 109.47164 * 289.99976 * 14 12 2 29 29 H 1.08996 * 109.46920 * 50.00010 * 14 12 2 30 30 H 1.08997 * 112.85113 * 45.33153 * 15 14 12 31 31 H 1.08995 * 113.61711 * 334.56657 * 16 15 14 32 32 H 1.09004 * 113.61850 * 105.47445 * 16 15 14 33 33 H 1.08997 * 109.47268 * 157.48702 * 18 17 16 34 34 H 1.08996 * 109.46946 * 277.49677 * 18 17 16 35 35 H 1.09007 * 109.46838 * 37.49186 * 18 17 16 36 36 H 1.08998 * 109.47534 * 322.40819 * 19 17 16 37 37 H 1.09008 * 109.46890 * 82.40463 * 19 17 16 38 38 H 1.09005 * 109.47216 * 202.40131 * 19 17 16 39 39 H 1.09002 * 113.61750 * 254.52694 * 20 15 14 40 40 H 1.09007 * 113.61749 * 25.43314 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8268 -0.4200 5.2204 11 1 1.8257 -2.5203 4.0077 12 7 2.0196 -0.6925 -1.1994 13 6 1.4341 -2.0355 -1.3079 14 6 1.7528 0.0972 -2.4091 15 6 2.4883 -0.5257 -3.5973 16 6 3.9434 -0.0488 -3.7398 17 6 3.6976 -0.0108 -5.2591 18 6 4.0080 -1.3341 -5.9616 19 6 4.3318 1.1947 -5.9558 20 6 2.2065 0.1794 -4.9345 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7095 1.1617 3.4844 25 1 1.8662 -2.5521 -2.1649 26 1 1.6465 -2.5988 -0.3991 27 1 0.3555 -1.9520 -1.4399 28 1 0.6814 0.1053 -2.6087 29 1 2.1024 1.1188 -2.2604 30 1 2.3775 -1.6090 -3.6430 31 1 4.1260 0.9327 -3.3024 32 1 4.6788 -0.7930 -3.4340 33 1 3.4613 -1.3826 -6.9033 34 1 5.0780 -1.3986 -6.1587 35 1 3.7056 -2.1641 -5.3229 36 1 4.2481 2.0712 -5.3134 37 1 5.3837 0.9882 -6.1534 38 1 3.8155 1.3833 -6.8972 39 1 1.5416 -0.3809 -5.5919 40 1 1.9133 1.2235 -4.8244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528403273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:07 Heat of formation + Delta-G solvation = -6.104349 kcal Electronic energy + Delta-G solvation = -16272.158059 eV Core-core repulsion = 13893.468721 eV Total energy + Delta-G solvation = -2378.689338 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.77467 -38.52718 -34.81126 -32.33523 -30.29781 -28.28552 -27.95018 -27.24757 -26.52648 -25.38721 -21.83014 -20.61755 -19.05502 -18.20961 -16.99052 -16.39602 -16.07247 -15.63453 -15.20796 -14.87313 -14.66264 -14.30504 -13.99090 -13.61110 -13.51952 -13.03328 -12.82376 -12.69684 -12.66810 -12.59142 -12.48174 -12.41179 -12.15512 -12.05100 -11.88158 -11.46063 -11.24233 -10.92884 -10.82077 -10.64179 -10.48188 -8.78780 -8.09527 -6.20601 1.43016 1.44896 1.52472 2.43806 3.19114 3.37313 3.67437 3.82943 3.84013 4.10731 4.38096 4.46989 4.56270 4.63156 4.68420 4.77248 4.83660 4.84953 4.86016 4.91533 4.95279 4.99131 5.06420 5.08265 5.11799 5.15969 5.21749 5.25463 5.33454 5.41219 5.52792 5.65560 5.70953 5.76288 5.81451 6.23214 6.52409 6.79205 6.93150 7.48712 8.96476 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045399 B = 0.005764 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.606167 B = 4856.675416 C = 4948.173076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.214 3.786 3 H 0.001 0.999 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.542 5.542 13 C 0.040 3.960 14 C 0.069 3.931 15 C -0.102 4.102 16 C -0.119 4.119 17 C -0.084 4.084 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.121 4.121 21 H 0.021 0.979 22 H 0.033 0.967 23 H 0.060 0.940 24 H 0.261 0.739 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.015 0.985 28 H 0.019 0.981 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.622 -2.668 -15.713 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.106 3.894 3 H 0.019 0.981 4 C -0.552 4.552 5 H 0.074 0.926 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.266 5.266 13 C -0.108 4.108 14 C -0.059 4.059 15 C -0.120 4.120 16 C -0.157 4.157 17 C -0.084 4.084 18 C -0.182 4.182 19 C -0.190 4.190 20 C -0.159 4.159 21 H 0.040 0.960 22 H 0.052 0.948 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.063 -2.606 -15.529 16.262 hybrid contribution -0.838 0.031 1.240 1.497 sum 3.225 -2.575 -14.289 14.873 Atomic orbital electron populations 1.22184 1.00454 0.99163 0.99736 1.19061 0.89929 0.92712 0.87658 0.98131 1.21347 1.30490 1.12403 0.90927 0.92629 1.25716 0.95429 0.95843 1.01885 1.70015 1.38008 1.24252 1.24017 0.85580 0.78668 0.78681 0.78489 1.19872 1.20987 1.19588 1.62217 1.58890 1.03196 1.02263 1.22210 0.96112 0.91182 1.01331 1.22057 0.96879 0.96621 0.90368 1.22494 0.96437 0.99853 0.93245 1.23027 0.96256 1.00637 0.95731 1.21816 0.95498 0.96821 0.94280 1.21577 1.01865 0.94675 1.00075 1.21709 1.00655 0.96348 1.00290 1.23055 0.96482 1.00611 0.95782 0.96014 0.94812 0.92114 0.93015 0.90905 0.92899 0.96704 0.96279 0.93127 0.89268 0.91544 0.92408 0.91415 0.91876 0.92962 0.93226 0.92142 0.91690 0.90725 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.83 8.22 71.98 0.59 -7.24 16 2 C 0.21 11.21 2.31 44.17 0.10 11.31 16 3 H 0.00 0.05 7.93 -2.39 -0.02 0.03 16 4 C -0.51 -28.93 7.91 25.60 0.20 -28.72 16 5 H 0.06 3.13 7.12 -2.91 -0.02 3.11 16 6 C 0.01 0.53 5.30 84.65 0.45 0.98 16 7 N -0.92 -54.11 11.32 21.45 0.24 -53.87 16 8 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.54 -23.81 4.70 -901.49 -4.24 -28.05 16 13 C 0.04 1.57 8.49 127.69 1.08 2.65 16 14 C 0.07 2.55 4.35 86.30 0.38 2.93 16 15 C -0.10 -2.95 3.33 -10.27 -0.03 -2.98 16 16 C -0.12 -3.29 6.76 31.18 0.21 -3.08 16 17 C -0.08 -1.80 1.39 -51.59 -0.07 -1.87 16 18 C -0.12 -2.28 9.07 71.98 0.65 -1.63 16 19 C -0.13 -2.48 9.20 71.98 0.66 -1.82 16 20 C -0.12 -2.83 6.79 31.12 0.21 -2.62 16 21 H 0.02 0.97 6.91 -2.39 -0.02 0.95 16 22 H 0.03 1.62 6.41 -2.39 -0.02 1.61 16 23 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 24 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 25 H 0.07 2.39 6.30 -2.38 -0.02 2.38 16 26 H 0.05 2.25 6.76 -2.39 -0.02 2.23 16 27 H 0.01 0.57 6.46 -2.39 -0.02 0.55 16 28 H 0.02 0.71 7.06 -2.39 -0.02 0.70 16 29 H 0.05 1.98 7.66 -2.39 -0.02 1.96 16 30 H 0.09 2.55 5.81 -2.39 -0.01 2.54 16 31 H 0.07 1.99 7.75 -2.39 -0.02 1.97 16 32 H 0.06 1.65 8.10 -2.38 -0.02 1.63 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.02 7.34 -2.38 -0.02 1.00 16 36 H 0.05 0.99 7.96 -2.39 -0.02 0.97 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 40 H 0.08 1.82 8.06 -2.38 -0.02 1.81 16 Total: -1.00 -60.06 302.69 3.44 -56.61 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.98 Total: 10.95 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 4.44 Total: -32.10 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -4.00 Total: -81.91 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -60.06 3.44 -56.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528403273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.510 kcal (2) G-P(sol) polarization free energy of solvation -60.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds