Wall clock time and date at job start Mon Mar 30 2020 02:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47289 * 2 1 4 4 C 1.52996 * 109.46984 * 239.99542 * 2 1 3 5 5 H 1.08997 * 110.27388 * 59.30248 * 4 2 1 6 6 C 1.54601 * 110.31275 * 297.21169 * 4 2 1 7 7 C 1.55101 * 102.84473 * 219.18651 * 6 4 2 8 8 N 1.48533 * 103.28707 * 37.30642 * 7 6 4 9 9 C 1.46900 * 111.00190 * 200.33547 * 8 7 6 10 10 H 1.08991 * 109.47287 * 60.52702 * 9 8 7 11 11 C 1.52999 * 109.47012 * 180.53167 * 9 8 7 12 12 C 1.52997 * 109.46703 * 300.52677 * 9 8 7 13 13 C 1.50699 * 109.47209 * 174.42062 * 12 9 8 14 14 H 1.07999 * 119.99766 * 4.28290 * 13 12 9 15 15 C 1.37873 * 120.00391 * 184.28826 * 13 12 9 16 16 N 1.31516 * 120.00050 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00378 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47096 * 59.99869 * 17 15 13 19 19 H 1.48498 * 109.47369 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47247 * 300.00077 * 17 15 13 21 21 C 1.47914 * 105.81729 * 320.84662 * 8 7 6 22 22 H 1.09007 * 109.46946 * 60.00222 * 1 2 3 23 23 H 1.09003 * 109.47497 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47302 * 300.00120 * 1 2 3 25 25 H 1.08997 * 109.46886 * 119.99798 * 2 1 3 26 26 H 1.09007 * 109.46945 * 299.99778 * 3 2 1 27 27 H 1.08995 * 109.47046 * 59.99724 * 3 2 1 28 28 H 1.08995 * 109.47009 * 179.97438 * 3 2 1 29 29 H 1.08996 * 110.72290 * 337.48702 * 6 4 2 30 30 H 1.08998 * 110.71927 * 100.77237 * 6 4 2 31 31 H 1.09002 * 110.59580 * 278.87320 * 7 6 4 32 32 H 1.09002 * 110.82880 * 155.84773 * 7 6 4 33 33 H 1.08999 * 109.47213 * 179.97438 * 11 9 8 34 34 H 1.09001 * 109.47536 * 299.99619 * 11 9 8 35 35 H 1.09001 * 109.47551 * 59.99828 * 11 9 8 36 36 H 1.09004 * 109.47571 * 294.42412 * 12 9 8 37 37 H 1.09002 * 109.47203 * 54.42367 * 12 9 8 38 38 H 0.97001 * 120.00734 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.91123 * 265.97540 * 21 8 7 40 40 H 1.09001 * 110.08050 * 144.77465 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 1 1.6737 -0.2251 -2.1478 6 6 1.5937 -2.2015 -1.2339 7 6 2.8372 -2.9422 -1.7915 8 7 3.9749 -2.1875 -1.2065 9 6 5.2075 -2.4159 -1.9723 10 1 5.0652 -2.0784 -2.9989 11 6 6.3572 -1.6344 -1.3332 12 6 5.5412 -3.9090 -1.9680 13 6 6.7256 -4.1616 -2.8649 14 1 7.2364 -3.3321 -3.3312 15 6 7.1571 -5.4515 -3.0902 16 7 6.5347 -6.4617 -2.5229 17 14 8.6248 -5.7647 -4.2025 18 1 9.8200 -5.0781 -3.6501 19 1 8.8841 -7.2248 -4.2807 20 1 8.3367 -5.2403 -5.5616 21 6 3.5793 -0.7629 -1.2513 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.3744 -2.5277 -0.2173 30 1 0.7308 -2.3508 -1.8828 31 1 2.8592 -2.8888 -2.8800 32 1 2.8519 -3.9799 -1.4581 33 1 7.2719 -1.8042 -1.9011 34 1 6.1194 -0.5707 -1.3362 35 1 6.4995 -1.9720 -0.3066 36 1 5.7805 -4.2249 -0.9525 37 1 4.6831 -4.4742 -2.3316 38 1 6.8379 -7.3693 -2.6816 39 1 3.9621 -0.2998 -2.1607 40 1 3.9661 -0.2395 -0.3770 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591016290.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:21 Heat of formation + Delta-G solvation = -26.255696 kcal Electronic energy + Delta-G solvation = -16212.786017 eV Core-core repulsion = 13833.222851 eV Total energy + Delta-G solvation = -2379.563166 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.18757 -35.93450 -33.37125 -31.83574 -29.06746 -28.05682 -27.15719 -26.31389 -23.51789 -21.62269 -21.10794 -19.53355 -18.89750 -16.53391 -15.51001 -15.26042 -14.47987 -14.27051 -13.87424 -13.60311 -13.09789 -12.72917 -12.47095 -12.34092 -12.21007 -11.91232 -11.67060 -11.40578 -11.27878 -10.94699 -10.86666 -10.78990 -10.57763 -10.40498 -10.34627 -10.27303 -10.17102 -9.82788 -9.11920 -9.04884 -8.30632 -7.69551 -5.96323 -3.97973 3.34824 3.39314 3.41530 4.45242 4.66294 4.78162 4.79125 4.92501 5.22518 5.38949 5.39643 5.53006 5.59880 5.63938 5.71637 5.80124 5.80810 5.97109 6.03355 6.06139 6.10050 6.14062 6.15561 6.27232 6.35101 6.39185 6.44397 6.55880 6.58019 6.72061 6.97159 7.14762 7.58169 7.61780 7.82779 7.91806 8.12646 8.48288 9.08296 9.65021 11.15107 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.054994 B = 0.005567 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.021062 B = 5028.607009 C = 5355.105155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.149 4.149 4 C -0.093 4.093 5 H 0.067 0.933 6 C -0.118 4.118 7 C 0.041 3.959 8 N -0.513 5.513 9 C 0.076 3.924 10 H 0.027 0.973 11 C -0.128 4.128 12 C 0.033 3.967 13 C -0.517 4.517 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 C 0.040 3.960 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.053 0.947 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.260 0.740 39 H 0.035 0.965 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.167 12.306 3.561 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.206 4.206 4 C -0.113 4.113 5 H 0.086 0.914 6 C -0.156 4.156 7 C -0.087 4.087 8 N -0.238 5.238 9 C -0.031 4.031 10 H 0.045 0.955 11 C -0.186 4.186 12 C -0.005 4.005 13 C -0.556 4.556 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.718 3.282 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.088 4.088 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.034 11.945 4.102 16.131 hybrid contribution 0.735 -0.006 -1.549 1.714 sum -9.299 11.939 2.554 15.347 Atomic orbital electron populations 1.21846 0.95589 1.01736 1.01166 1.21147 0.95263 0.95856 0.98230 1.21893 1.01415 0.96100 1.01188 1.22071 0.95506 0.96082 0.97592 0.91442 1.22606 0.97349 0.94244 1.01404 1.23158 0.89517 0.99029 0.97031 1.64850 1.03098 1.04379 1.51471 1.22022 0.87951 1.00324 0.92820 0.95482 1.21710 0.98678 0.96877 1.01319 1.19134 0.96441 0.87542 0.97362 1.21184 1.13894 0.92081 1.28467 0.92769 1.24983 0.96910 0.96306 0.96094 1.69960 1.40669 0.98814 1.43925 0.86691 0.83272 0.77024 0.81204 1.20245 1.21311 1.20370 1.22930 0.93754 0.91769 1.00326 0.93059 0.92503 0.93105 0.90782 0.93035 0.93061 0.92310 0.90962 0.91823 0.94235 0.89822 0.91740 0.95156 0.92763 0.96136 0.96129 0.93010 0.94666 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.00 37.16 0.33 -1.06 16 2 C -0.09 -0.96 2.21 -90.62 -0.20 -1.16 16 3 C -0.15 -1.49 8.95 37.16 0.33 -1.15 16 4 C -0.09 -1.21 2.56 -89.26 -0.23 -1.44 16 5 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 6 C -0.12 -1.63 5.62 -24.78 -0.14 -1.77 16 7 C 0.04 0.72 5.40 -1.81 -0.01 0.71 16 8 N -0.51 -9.73 5.11 -222.38 -1.14 -10.87 16 9 C 0.08 1.66 1.78 -67.71 -0.12 1.54 16 10 H 0.03 0.61 7.99 -51.93 -0.41 0.20 16 11 C -0.13 -2.55 8.96 37.16 0.33 -2.22 16 12 C 0.03 0.86 4.41 -27.88 -0.12 0.74 16 13 C -0.52 -14.67 8.48 -34.44 -0.29 -14.96 16 14 H 0.05 1.49 6.94 -52.49 -0.36 1.13 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.04 0.63 4.65 -2.75 -0.01 0.62 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.55 7.25 -51.93 -0.38 0.17 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.62 6.54 -51.93 -0.34 0.28 16 29 H 0.07 0.98 7.73 -51.93 -0.40 0.58 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.73 8.00 -51.93 -0.42 0.31 16 32 H 0.08 1.61 7.52 -51.93 -0.39 1.22 16 33 H 0.06 1.34 6.90 -51.93 -0.36 0.98 16 34 H 0.03 0.52 7.25 -51.93 -0.38 0.14 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.57 6.64 -51.93 -0.34 0.23 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.03 0.56 7.63 -51.93 -0.40 0.16 16 40 H 0.07 1.10 6.37 -51.93 -0.33 0.77 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -29.52 305.08 -8.50 -38.02 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.45 Total: -3.61 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -0.22 Total: -18.58 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.40 Total: -37.20 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.52 -8.50 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591016290.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.760 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds