Wall clock time and date at job start Mon Mar 30 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47289 * 2 1 4 4 C 1.52996 * 109.46984 * 239.99542 * 2 1 3 5 5 H 1.08997 * 110.27388 * 59.30248 * 4 2 1 6 6 C 1.54601 * 110.31275 * 297.21169 * 4 2 1 7 7 C 1.55101 * 102.84473 * 219.18651 * 6 4 2 8 8 N 1.48533 * 103.28707 * 37.30642 * 7 6 4 9 9 C 1.46900 * 111.00190 * 200.33547 * 8 7 6 10 10 H 1.08991 * 109.47287 * 60.52702 * 9 8 7 11 11 C 1.52999 * 109.47012 * 180.53167 * 9 8 7 12 12 C 1.52997 * 109.46703 * 300.52677 * 9 8 7 13 13 C 1.50699 * 109.47209 * 174.42062 * 12 9 8 14 14 H 1.07999 * 119.99766 * 4.28290 * 13 12 9 15 15 C 1.37873 * 120.00391 * 184.28826 * 13 12 9 16 16 N 1.31516 * 120.00050 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00378 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47096 * 59.99869 * 17 15 13 19 19 H 1.48498 * 109.47369 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47247 * 300.00077 * 17 15 13 21 21 C 1.47914 * 105.81729 * 320.84662 * 8 7 6 22 22 H 1.09007 * 109.46946 * 60.00222 * 1 2 3 23 23 H 1.09003 * 109.47497 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47302 * 300.00120 * 1 2 3 25 25 H 1.08997 * 109.46886 * 119.99798 * 2 1 3 26 26 H 1.09007 * 109.46945 * 299.99778 * 3 2 1 27 27 H 1.08995 * 109.47046 * 59.99724 * 3 2 1 28 28 H 1.08995 * 109.47009 * 179.97438 * 3 2 1 29 29 H 1.08996 * 110.72290 * 337.48702 * 6 4 2 30 30 H 1.08998 * 110.71927 * 100.77237 * 6 4 2 31 31 H 1.09002 * 110.59580 * 278.87320 * 7 6 4 32 32 H 1.09002 * 110.82880 * 155.84773 * 7 6 4 33 33 H 1.08999 * 109.47213 * 179.97438 * 11 9 8 34 34 H 1.09001 * 109.47536 * 299.99619 * 11 9 8 35 35 H 1.09001 * 109.47551 * 59.99828 * 11 9 8 36 36 H 1.09004 * 109.47571 * 294.42412 * 12 9 8 37 37 H 1.09002 * 109.47203 * 54.42367 * 12 9 8 38 38 H 0.97001 * 120.00734 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.91123 * 265.97540 * 21 8 7 40 40 H 1.09001 * 110.08050 * 144.77465 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 1 1.6737 -0.2251 -2.1478 6 6 1.5937 -2.2015 -1.2339 7 6 2.8372 -2.9422 -1.7915 8 7 3.9749 -2.1875 -1.2065 9 6 5.2075 -2.4159 -1.9723 10 1 5.0652 -2.0784 -2.9989 11 6 6.3572 -1.6344 -1.3332 12 6 5.5412 -3.9090 -1.9680 13 6 6.7256 -4.1616 -2.8649 14 1 7.2364 -3.3321 -3.3312 15 6 7.1571 -5.4515 -3.0902 16 7 6.5347 -6.4617 -2.5229 17 14 8.6248 -5.7647 -4.2025 18 1 9.8200 -5.0781 -3.6501 19 1 8.8841 -7.2248 -4.2807 20 1 8.3367 -5.2403 -5.5616 21 6 3.5793 -0.7629 -1.2513 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.3744 -2.5277 -0.2173 30 1 0.7308 -2.3508 -1.8828 31 1 2.8592 -2.8888 -2.8800 32 1 2.8519 -3.9799 -1.4581 33 1 7.2719 -1.8042 -1.9011 34 1 6.1194 -0.5707 -1.3362 35 1 6.4995 -1.9720 -0.3066 36 1 5.7805 -4.2249 -0.9525 37 1 4.6831 -4.4742 -2.3316 38 1 6.8379 -7.3693 -2.6816 39 1 3.9621 -0.2998 -2.1607 40 1 3.9661 -0.2395 -0.3770 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591016290.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:20 Heat of formation + Delta-G solvation = -43.803686 kcal Electronic energy + Delta-G solvation = -16213.546955 eV Core-core repulsion = 13833.222851 eV Total energy + Delta-G solvation = -2380.324104 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.50072 -37.28073 -35.15122 -33.57176 -30.56661 -29.33794 -28.61128 -27.54997 -25.43403 -23.01048 -22.33241 -20.93031 -20.24592 -18.64290 -16.92610 -16.74459 -16.26182 -15.43009 -15.37141 -14.91142 -14.25194 -14.18397 -14.04669 -13.73591 -13.53533 -13.06555 -12.97451 -12.92485 -12.81331 -12.63939 -12.36333 -12.28999 -12.13568 -11.83864 -11.73545 -11.43386 -11.35735 -11.21428 -11.10926 -10.99368 -10.53616 -9.23545 -8.18697 -6.29113 1.39313 1.42433 1.50205 2.40509 3.14177 3.20252 3.70017 3.76992 3.85264 4.25572 4.27134 4.37424 4.39959 4.54980 4.56531 4.63279 4.67227 4.77959 4.81527 4.89280 5.01258 5.03391 5.03653 5.08576 5.14415 5.16314 5.21448 5.32971 5.37359 5.40938 5.47909 5.54265 5.60422 5.68943 5.78991 6.08551 6.24654 6.38773 6.86712 7.39255 8.93428 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.054994 B = 0.005567 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.021062 B = 5028.607009 C = 5355.105155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.147 4.147 4 C -0.086 4.086 5 H 0.079 0.921 6 C -0.106 4.106 7 C 0.036 3.964 8 N -0.526 5.526 9 C 0.086 3.914 10 H 0.019 0.981 11 C -0.120 4.120 12 C 0.042 3.958 13 C -0.536 4.536 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.268 1.268 21 C 0.040 3.960 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.028 0.972 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.046 0.954 36 H -0.013 1.013 37 H -0.007 1.007 38 H 0.263 0.737 39 H 0.034 0.966 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.499 14.199 3.214 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.204 4.204 4 C -0.105 4.105 5 H 0.098 0.902 6 C -0.144 4.144 7 C -0.092 4.092 8 N -0.251 5.251 9 C -0.022 4.022 10 H 0.037 0.963 11 C -0.177 4.177 12 C 0.005 3.995 13 C -0.574 4.574 14 H 0.079 0.921 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.193 1.193 21 C -0.088 4.088 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.005 0.995 37 H 0.011 0.989 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.374 13.861 3.761 17.717 hybrid contribution 0.799 -0.611 -1.408 1.730 sum -9.576 13.249 2.352 16.516 Atomic orbital electron populations 1.21820 0.94154 1.01960 1.02125 1.21106 0.96419 0.96166 0.96467 1.21875 1.00966 0.95382 1.02191 1.22059 0.93438 0.95660 0.99335 0.90215 1.22560 0.95929 0.94225 1.01691 1.23151 0.91411 0.98262 0.96415 1.64779 1.02504 1.06942 1.50877 1.21742 0.90201 0.97149 0.93120 0.96330 1.21610 0.97331 0.98488 1.00319 1.18947 0.95030 0.90708 0.94808 1.21575 1.14510 0.92605 1.28729 0.92090 1.25942 1.00061 0.96012 0.97625 1.70108 1.42495 0.99311 1.45435 0.85529 0.79412 0.77046 0.79234 1.19075 1.20878 1.19269 1.23020 0.95873 0.89236 1.00630 0.92302 0.92678 0.91996 0.91909 0.92294 0.91856 0.93000 0.90655 0.89718 0.95380 0.92510 0.92815 0.91962 0.93456 0.99482 0.98862 0.92856 0.94746 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.00 71.98 0.65 -1.66 16 2 C -0.08 -1.62 2.21 -10.80 -0.02 -1.64 16 3 C -0.15 -2.51 8.95 71.98 0.64 -1.87 16 4 C -0.09 -2.04 2.56 -9.92 -0.03 -2.07 16 5 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 6 C -0.11 -2.80 5.62 31.86 0.18 -2.62 16 7 C 0.04 1.30 5.40 86.71 0.47 1.76 16 8 N -0.53 -20.13 5.11 -857.49 -4.38 -24.51 16 9 C 0.09 3.81 1.78 44.91 0.08 3.89 16 10 H 0.02 0.85 7.99 -2.39 -0.02 0.83 16 11 C -0.12 -4.73 8.96 71.98 0.65 -4.08 16 12 C 0.04 2.34 4.41 29.85 0.13 2.47 16 13 C -0.54 -31.02 8.48 25.60 0.22 -30.80 16 14 H 0.06 3.37 6.94 -2.91 -0.02 3.35 16 15 C 0.00 0.07 5.46 84.65 0.46 0.54 16 16 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 17 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 C 0.04 1.18 4.65 86.44 0.40 1.59 16 22 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 23 H 0.05 0.91 7.25 -2.39 -0.02 0.89 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 26 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 0.95 6.54 -2.39 -0.02 0.94 16 29 H 0.07 1.95 7.73 -2.39 -0.02 1.93 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 31 H 0.03 1.07 8.00 -2.39 -0.02 1.05 16 32 H 0.06 2.32 7.52 -2.39 -0.02 2.31 16 33 H 0.05 2.20 6.90 -2.39 -0.02 2.19 16 34 H 0.06 2.03 7.25 -2.39 -0.02 2.01 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 37 H -0.01 -0.42 6.64 -2.39 -0.02 -0.43 16 38 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.03 1.03 7.63 -2.39 -0.02 1.01 16 40 H 0.08 2.31 6.37 -2.39 -0.02 2.29 16 Total: -1.00 -64.64 305.08 2.72 -61.91 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.96 Total: 7.88 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 3.83 Total: -34.49 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -4.10 Total: -82.22 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.64 2.72 -61.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591016290.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.109 kcal (2) G-P(sol) polarization free energy of solvation -64.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds