Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47476 * 2 1 4 4 C 1.52992 * 109.47198 * 239.99565 * 2 1 3 5 5 H 1.08997 * 110.64752 * 59.30479 * 4 2 1 6 6 C 1.54590 * 110.72514 * 296.14981 * 4 2 1 7 7 C 1.54000 * 105.14327 * 219.68215 * 6 4 2 8 8 N 1.47907 * 107.05323 * 358.77791 * 7 6 4 9 9 C 1.46898 * 110.99978 * 145.84425 * 8 7 6 10 10 H 1.09008 * 109.46906 * 302.21948 * 9 8 7 11 11 C 1.53001 * 109.47360 * 182.21599 * 9 8 7 12 12 C 1.53007 * 109.47344 * 62.21233 * 9 8 7 13 13 C 1.50696 * 109.47235 * 185.52581 * 12 9 8 14 14 H 1.08002 * 119.99912 * 5.06028 * 13 12 9 15 15 C 1.37868 * 120.00152 * 185.05047 * 13 12 9 16 16 N 1.31523 * 120.00129 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00244 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46960 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46920 * 120.00135 * 17 15 13 20 20 H 1.48498 * 109.47317 * 240.00131 * 17 15 13 21 21 C 1.48729 * 105.94589 * 25.19794 * 8 7 6 22 22 H 1.08991 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47197 * 300.00538 * 1 2 3 24 24 H 1.08998 * 109.46798 * 60.00243 * 1 2 3 25 25 H 1.09008 * 109.46824 * 119.99796 * 2 1 3 26 26 H 1.09008 * 109.46927 * 299.99732 * 3 2 1 27 27 H 1.08998 * 109.47347 * 59.99553 * 3 2 1 28 28 H 1.08997 * 109.47424 * 179.97438 * 3 2 1 29 29 H 1.08999 * 110.31139 * 338.60004 * 6 4 2 30 30 H 1.08999 * 110.31094 * 100.67133 * 6 4 2 31 31 H 1.09000 * 109.91793 * 118.12476 * 7 6 4 32 32 H 1.08995 * 109.92051 * 239.22747 * 7 6 4 33 33 H 1.08999 * 109.46597 * 59.99825 * 11 9 8 34 34 H 1.08995 * 109.47049 * 179.97438 * 11 9 8 35 35 H 1.08995 * 109.46931 * 300.00346 * 11 9 8 36 36 H 1.08991 * 109.47166 * 305.53424 * 12 9 8 37 37 H 1.09000 * 109.46107 * 65.53303 * 12 9 8 38 38 H 0.96995 * 119.99838 * 179.97438 * 16 15 13 39 39 H 1.08994 * 110.83966 * 202.57623 * 21 8 7 40 40 H 1.09000 * 110.58215 * 79.38379 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6772 -0.2298 -2.1518 6 6 1.6216 -2.2094 -1.2307 7 6 2.8409 -2.9769 -1.7746 8 7 3.8729 -1.9712 -2.1084 9 6 5.2211 -2.4962 -1.8542 10 1 5.3037 -2.7949 -0.8091 11 6 6.2564 -1.4114 -2.1580 12 6 5.4742 -3.7086 -2.7526 13 6 6.8009 -4.3287 -2.3975 14 1 7.3654 -3.9521 -1.5573 15 6 7.2940 -5.3770 -3.1450 16 7 6.6067 -5.8355 -4.1684 17 14 8.9383 -6.1462 -2.7045 18 1 9.5070 -5.4541 -1.5201 19 1 8.7436 -7.5846 -2.3905 20 1 9.8710 -6.0119 -3.8521 21 6 3.5878 -0.7921 -1.2479 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 1.6768 1.9563 -0.8901 27 1 1.6768 1.9564 0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.3982 -2.5270 -0.2122 30 1 0.7559 -2.3670 -1.8740 31 1 3.2198 -3.6592 -1.0137 32 1 2.5601 -3.5355 -2.6674 33 1 6.0761 -0.5477 -1.5179 34 1 7.2568 -1.8007 -1.9690 35 1 6.1738 -1.1127 -3.2029 36 1 4.6801 -4.4408 -2.6069 37 1 5.4889 -3.3912 -3.7953 38 1 6.9539 -6.5727 -4.6945 39 1 4.0147 0.1139 -1.6777 40 1 3.9646 -0.9546 -0.2381 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591016292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -27.654299 kcal Electronic energy + Delta-G solvation = -16182.343230 eV Core-core repulsion = 13802.719416 eV Total energy + Delta-G solvation = -2379.623814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.15316 -35.95026 -33.41078 -31.84150 -29.02050 -28.09655 -27.17637 -26.35815 -23.54063 -21.61780 -21.08245 -19.69103 -18.74276 -16.53945 -15.65456 -15.06981 -14.62734 -14.31766 -13.62642 -13.48329 -13.26870 -13.02587 -12.67327 -12.25455 -12.06239 -11.96896 -11.62338 -11.43649 -11.37534 -10.94006 -10.87490 -10.74900 -10.64923 -10.42597 -10.34720 -10.23314 -10.19468 -9.81302 -9.14776 -9.04392 -8.31241 -7.69246 -5.96393 -3.98005 3.32459 3.39981 3.43697 4.42574 4.55983 4.74749 4.85565 4.97569 5.18656 5.36267 5.39496 5.44201 5.57575 5.58672 5.69928 5.78919 5.81112 5.96125 6.01900 6.04503 6.08618 6.11923 6.16688 6.21607 6.27174 6.38490 6.44095 6.50168 6.60682 6.73011 6.97310 7.16704 7.58536 7.61593 7.81949 7.91995 8.13222 8.48319 9.08964 9.65061 11.15087 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.053920 B = 0.005492 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.162871 B = 5096.668712 C = 5374.181639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.087 4.087 5 H 0.079 0.921 6 C -0.125 4.125 7 C 0.042 3.958 8 N -0.515 5.515 9 C 0.077 3.923 10 H 0.026 0.974 11 C -0.128 4.128 12 C 0.033 3.967 13 C -0.516 4.516 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.042 3.958 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.013 0.987 37 H 0.027 0.973 38 H 0.259 0.741 39 H 0.074 0.926 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.089 11.192 7.474 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.106 4.106 5 H 0.097 0.903 6 C -0.163 4.163 7 C -0.086 4.086 8 N -0.240 5.240 9 C -0.030 4.030 10 H 0.044 0.956 11 C -0.186 4.186 12 C -0.005 4.005 13 C -0.555 4.555 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.086 4.086 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.079 11.185 6.781 16.513 hybrid contribution 1.007 -0.827 1.017 1.653 sum -9.072 10.358 7.798 15.824 Atomic orbital electron populations 1.21836 0.95403 1.01734 1.01331 1.21142 0.95536 0.96143 0.97898 1.21847 1.01320 0.95926 1.01331 1.22142 0.95430 0.95336 0.97647 0.90299 1.22491 0.98327 0.94898 1.00600 1.22740 0.91321 0.94673 0.99891 1.64832 1.03207 1.05119 1.50794 1.22022 0.86008 0.96803 0.98179 0.95606 1.21710 0.99483 0.96576 1.00811 1.19128 0.96101 0.90143 0.95101 1.21240 1.04654 1.15942 1.13624 0.92731 1.24987 0.97289 0.96966 0.95083 1.69988 1.38122 1.26655 1.18542 0.86582 0.84225 0.79127 0.78340 1.19799 1.21098 1.21016 1.23240 0.94324 0.95569 0.95443 0.92580 0.93120 0.92775 0.91471 0.92717 0.93131 0.92449 0.92013 0.91597 0.93891 0.90565 0.95157 0.91638 0.92732 0.96880 0.95444 0.93124 0.90739 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.01 37.16 0.33 -1.02 16 2 C -0.09 -0.94 2.31 -90.62 -0.21 -1.15 16 3 C -0.15 -1.43 9.00 37.16 0.33 -1.09 16 4 C -0.09 -1.12 2.59 -88.76 -0.23 -1.35 16 5 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 6 C -0.13 -1.71 5.57 -25.37 -0.14 -1.85 16 7 C 0.04 0.74 5.39 -2.75 -0.01 0.73 16 8 N -0.52 -9.80 5.10 -222.32 -1.13 -10.93 16 9 C 0.08 1.68 1.77 -67.71 -0.12 1.56 16 10 H 0.03 0.58 8.00 -51.92 -0.42 0.16 16 11 C -0.13 -2.56 8.88 37.16 0.33 -2.23 16 12 C 0.03 0.86 4.48 -27.88 -0.12 0.74 16 13 C -0.52 -14.64 8.31 -34.45 -0.29 -14.93 16 14 H 0.05 1.51 7.29 -52.49 -0.38 1.13 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 17 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.04 0.65 3.88 -1.79 -0.01 0.64 16 22 H 0.06 0.52 7.33 -51.93 -0.38 0.14 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.75 8.13 -51.92 -0.42 0.33 16 26 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.58 7.28 -51.93 -0.38 0.20 16 29 H 0.06 0.78 7.73 -51.93 -0.40 0.38 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.81 7.63 -51.93 -0.40 0.41 16 32 H 0.08 1.43 8.08 -51.93 -0.42 1.01 16 33 H 0.03 0.51 6.95 -51.93 -0.36 0.15 16 34 H 0.06 1.37 7.10 -51.93 -0.37 1.00 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.01 0.36 6.99 -51.93 -0.36 0.00 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.07 1.11 7.57 -51.93 -0.39 0.72 16 40 H 0.04 0.57 7.91 -51.93 -0.41 0.16 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -29.73 307.32 -8.63 -38.36 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -7.61 Total: -4.07 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -0.23 Total: -18.37 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.40 Total: -37.33 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.73 -8.63 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591016292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.705 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds