Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47476 * 2 1 4 4 C 1.52992 * 109.47198 * 239.99565 * 2 1 3 5 5 H 1.08997 * 110.64752 * 59.30479 * 4 2 1 6 6 C 1.54590 * 110.72514 * 296.14981 * 4 2 1 7 7 C 1.54000 * 105.14327 * 219.68215 * 6 4 2 8 8 N 1.47907 * 107.05323 * 358.77791 * 7 6 4 9 9 C 1.46898 * 110.99978 * 145.84425 * 8 7 6 10 10 H 1.09008 * 109.46906 * 302.21948 * 9 8 7 11 11 C 1.53001 * 109.47360 * 182.21599 * 9 8 7 12 12 C 1.53007 * 109.47344 * 62.21233 * 9 8 7 13 13 C 1.50696 * 109.47235 * 185.52581 * 12 9 8 14 14 H 1.08002 * 119.99912 * 5.06028 * 13 12 9 15 15 C 1.37868 * 120.00152 * 185.05047 * 13 12 9 16 16 N 1.31523 * 120.00129 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00244 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46960 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46920 * 120.00135 * 17 15 13 20 20 H 1.48498 * 109.47317 * 240.00131 * 17 15 13 21 21 C 1.48729 * 105.94589 * 25.19794 * 8 7 6 22 22 H 1.08991 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47197 * 300.00538 * 1 2 3 24 24 H 1.08998 * 109.46798 * 60.00243 * 1 2 3 25 25 H 1.09008 * 109.46824 * 119.99796 * 2 1 3 26 26 H 1.09008 * 109.46927 * 299.99732 * 3 2 1 27 27 H 1.08998 * 109.47347 * 59.99553 * 3 2 1 28 28 H 1.08997 * 109.47424 * 179.97438 * 3 2 1 29 29 H 1.08999 * 110.31139 * 338.60004 * 6 4 2 30 30 H 1.08999 * 110.31094 * 100.67133 * 6 4 2 31 31 H 1.09000 * 109.91793 * 118.12476 * 7 6 4 32 32 H 1.08995 * 109.92051 * 239.22747 * 7 6 4 33 33 H 1.08999 * 109.46597 * 59.99825 * 11 9 8 34 34 H 1.08995 * 109.47049 * 179.97438 * 11 9 8 35 35 H 1.08995 * 109.46931 * 300.00346 * 11 9 8 36 36 H 1.08991 * 109.47166 * 305.53424 * 12 9 8 37 37 H 1.09000 * 109.46107 * 65.53303 * 12 9 8 38 38 H 0.96995 * 119.99838 * 179.97438 * 16 15 13 39 39 H 1.08994 * 110.83966 * 202.57623 * 21 8 7 40 40 H 1.09000 * 110.58215 * 79.38379 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6772 -0.2298 -2.1518 6 6 1.6216 -2.2094 -1.2307 7 6 2.8409 -2.9769 -1.7746 8 7 3.8729 -1.9712 -2.1084 9 6 5.2211 -2.4962 -1.8542 10 1 5.3037 -2.7949 -0.8091 11 6 6.2564 -1.4114 -2.1580 12 6 5.4742 -3.7086 -2.7526 13 6 6.8009 -4.3287 -2.3975 14 1 7.3654 -3.9521 -1.5573 15 6 7.2940 -5.3770 -3.1450 16 7 6.6067 -5.8355 -4.1684 17 14 8.9383 -6.1462 -2.7045 18 1 9.5070 -5.4541 -1.5201 19 1 8.7436 -7.5846 -2.3905 20 1 9.8710 -6.0119 -3.8521 21 6 3.5878 -0.7921 -1.2479 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 1.6768 1.9563 -0.8901 27 1 1.6768 1.9564 0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.3982 -2.5270 -0.2122 30 1 0.7559 -2.3670 -1.8740 31 1 3.2198 -3.6592 -1.0137 32 1 2.5601 -3.5355 -2.6674 33 1 6.0761 -0.5477 -1.5179 34 1 7.2568 -1.8007 -1.9690 35 1 6.1738 -1.1127 -3.2029 36 1 4.6801 -4.4408 -2.6069 37 1 5.4889 -3.3912 -3.7953 38 1 6.9539 -6.5727 -4.6945 39 1 4.0147 0.1139 -1.6777 40 1 3.9646 -0.9546 -0.2381 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591016292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -45.367448 kcal Electronic energy + Delta-G solvation = -16183.111329 eV Core-core repulsion = 13802.719416 eV Total energy + Delta-G solvation = -2380.391914 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46478 -37.27312 -35.18266 -33.58870 -30.52740 -29.38099 -28.59263 -27.59441 -25.44491 -23.00883 -22.33013 -20.95672 -20.18960 -18.65119 -17.01418 -16.60732 -16.30842 -15.64213 -15.13651 -14.73266 -14.52332 -14.20416 -14.02088 -13.87062 -13.35932 -13.23418 -12.96205 -12.92176 -12.81280 -12.71014 -12.41404 -12.23171 -12.09678 -11.83842 -11.68486 -11.45545 -11.32227 -11.26280 -11.13209 -11.01628 -10.55371 -9.23745 -8.19325 -6.29733 1.39150 1.39420 1.52647 2.40036 3.14034 3.15183 3.68719 3.78907 3.90673 4.19706 4.27139 4.32101 4.41850 4.50255 4.54219 4.65448 4.66408 4.74509 4.88965 4.90711 4.93992 5.03329 5.05303 5.08729 5.13721 5.17566 5.22625 5.32678 5.34785 5.40280 5.46436 5.51268 5.60461 5.69321 5.78325 6.08174 6.22812 6.38527 6.86562 7.38754 8.93285 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.053920 B = 0.005492 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.162871 B = 5096.668712 C = 5374.181639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.146 4.146 4 C -0.077 4.077 5 H 0.081 0.919 6 C -0.115 4.115 7 C 0.038 3.962 8 N -0.530 5.530 9 C 0.088 3.912 10 H 0.019 0.981 11 C -0.120 4.120 12 C 0.043 3.957 13 C -0.533 4.533 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.964 3.036 18 H -0.261 1.261 19 H -0.279 1.279 20 H -0.278 1.278 21 C 0.043 3.957 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.024 0.976 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.046 0.954 36 H -0.014 1.014 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.083 0.917 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.219 12.537 8.923 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.203 4.203 4 C -0.096 4.096 5 H 0.099 0.901 6 C -0.153 4.153 7 C -0.090 4.090 8 N -0.255 5.255 9 C -0.021 4.021 10 H 0.037 0.963 11 C -0.178 4.178 12 C 0.005 3.995 13 C -0.571 4.571 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.788 3.212 18 H -0.185 1.185 19 H -0.205 1.205 20 H -0.203 1.203 21 C -0.085 4.085 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.004 0.996 37 H 0.010 0.990 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.219 12.549 8.241 18.161 hybrid contribution 1.000 -1.248 0.537 1.687 sum -9.219 11.301 8.778 17.023 Atomic orbital electron populations 1.21817 0.94100 1.01988 1.02185 1.21103 0.96557 0.96376 0.96210 1.21840 1.00947 0.95311 1.02231 1.22118 0.93393 0.94954 0.99177 0.90101 1.22446 0.96623 0.94844 1.01379 1.22739 0.92891 0.94767 0.98592 1.64743 1.01972 1.06415 1.52336 1.21729 0.88418 0.95638 0.96280 0.96326 1.21611 0.98102 0.97017 1.01025 1.18941 0.94883 0.91593 0.94056 1.21601 1.05384 1.16320 1.13832 0.92185 1.25945 1.01437 0.97466 0.94818 1.70129 1.40236 1.27310 1.19726 0.85417 0.79101 0.78140 0.78508 1.18496 1.20483 1.20323 1.23332 0.96439 0.93950 0.94746 0.92658 0.91846 0.92401 0.91757 0.92329 0.91788 0.93047 0.90613 0.90208 0.95730 0.92691 0.91794 0.92814 0.93524 0.99587 0.98978 0.92856 0.89898 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.01 71.98 0.65 -1.58 16 2 C -0.08 -1.55 2.31 -10.80 -0.02 -1.57 16 3 C -0.15 -2.41 9.00 71.98 0.65 -1.76 16 4 C -0.08 -1.84 2.59 -9.59 -0.02 -1.87 16 5 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 6 C -0.11 -2.99 5.57 31.47 0.18 -2.81 16 7 C 0.04 1.39 5.39 86.45 0.47 1.86 16 8 N -0.53 -20.32 5.10 -857.28 -4.37 -24.69 16 9 C 0.09 3.87 1.77 44.92 0.08 3.95 16 10 H 0.02 0.85 8.00 -2.38 -0.02 0.83 16 11 C -0.12 -4.74 8.88 71.98 0.64 -4.10 16 12 C 0.04 2.36 4.48 29.85 0.13 2.50 16 13 C -0.53 -30.92 8.31 25.60 0.21 -30.70 16 14 H 0.06 3.34 7.29 -2.91 -0.02 3.32 16 15 C 0.00 0.05 5.46 84.65 0.46 0.52 16 16 N -0.93 -58.18 13.29 21.45 0.28 -57.90 16 17 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 C 0.04 1.25 3.88 86.61 0.34 1.59 16 22 H 0.05 0.87 7.33 -2.39 -0.02 0.85 16 23 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 1.25 8.13 -2.38 -0.02 1.23 16 26 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.91 7.28 -2.39 -0.02 0.89 16 29 H 0.08 1.78 7.73 -2.39 -0.02 1.76 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.02 0.96 7.63 -2.39 -0.02 0.94 16 32 H 0.05 2.17 8.08 -2.39 -0.02 2.15 16 33 H 0.06 2.07 6.95 -2.39 -0.02 2.05 16 34 H 0.05 2.22 7.10 -2.39 -0.02 2.20 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H -0.01 -0.85 6.99 -2.39 -0.02 -0.86 16 37 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 38 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.08 2.30 7.57 -2.39 -0.02 2.28 16 40 H 0.04 1.12 7.91 -2.39 -0.02 1.10 16 Total: -1.00 -65.14 307.32 2.65 -62.49 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 0.96 Total: 7.08 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 3.75 Total: -33.98 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -4.09 Total: -82.59 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -65.14 2.65 -62.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591016292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.127 kcal (2) G-P(sol) polarization free energy of solvation -65.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds