Wall clock time and date at job start Mon Mar 30 2020 02:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50696 * 109.47344 * 184.99683 * 4 2 1 6 6 H 1.08002 * 119.99611 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99982 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99909 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99930 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47363 * 60.00349 * 9 7 5 11 11 H 1.48503 * 109.47300 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47448 * 300.00298 * 9 7 5 13 13 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 14 14 C 1.46903 * 110.99880 * 85.00797 * 13 2 1 15 15 H 1.09008 * 109.46643 * 324.99496 * 14 13 2 16 16 C 1.52991 * 109.47675 * 84.99764 * 14 13 2 17 17 C 1.53007 * 109.46857 * 205.00062 * 14 13 2 18 18 C 1.54267 * 110.02811 * 297.90364 * 17 14 13 19 19 C 1.54966 * 104.15495 * 217.13750 * 18 17 14 20 20 C 1.54892 * 102.77993 * 37.89273 * 19 18 17 21 21 C 1.53873 * 110.03035 * 180.68466 * 17 14 13 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 24 24 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 26 26 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 27 27 H 0.97003 * 119.99535 * 179.97438 * 8 7 5 28 28 H 1.00892 * 111.00435 * 321.04633 * 13 2 1 29 29 H 1.09002 * 109.47159 * 299.99608 * 16 14 13 30 30 H 1.09000 * 109.47151 * 59.99871 * 16 14 13 31 31 H 1.09004 * 109.47193 * 180.02562 * 16 14 13 32 32 H 1.08994 * 110.01826 * 59.29512 * 17 14 13 33 33 H 1.08996 * 110.48524 * 335.78101 * 18 17 14 34 34 H 1.08996 * 110.48683 * 98.42953 * 18 17 14 35 35 H 1.08996 * 110.72690 * 279.57317 * 19 18 17 36 36 H 1.09002 * 110.92135 * 156.29584 * 19 18 17 37 37 H 1.08999 * 110.48352 * 203.41086 * 20 19 18 38 38 H 1.08992 * 110.60387 * 80.81390 * 20 19 18 39 39 H 1.08998 * 110.03346 * 238.56316 * 21 17 14 40 40 H 1.09004 * 110.03157 * 359.95260 * 21 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1928 2.3583 8 7 3.5763 -1.8371 3.3000 9 14 6.0919 -1.0605 2.4373 10 1 6.4844 0.3705 2.4966 11 1 6.5869 -1.7607 3.6497 12 1 6.6845 -1.6865 1.2281 13 7 2.0196 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3469 15 1 1.2576 0.9329 -2.2906 16 6 3.4111 0.9807 -2.3224 17 6 1.9769 -0.5798 -3.6454 18 6 3.1678 -1.5534 -3.7632 19 6 3.5138 -1.5479 -5.2738 20 6 3.2972 -0.0661 -5.6695 21 6 2.0587 0.3652 -4.8570 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6054 -0.2617 2.1370 26 1 1.7516 -1.7715 1.2056 27 1 4.0607 -2.2439 4.0354 28 1 1.4495 -1.4979 -1.4100 29 1 3.4863 1.5524 -1.3974 30 1 4.2359 0.2703 -2.3786 31 1 3.4575 1.6600 -3.1736 32 1 1.0384 -1.1336 -3.6666 33 1 4.0136 -1.1941 -3.1770 34 1 2.8765 -2.5531 -3.4414 35 1 2.8365 -2.1984 -5.8270 36 1 4.5502 -1.8436 -5.4368 37 1 3.1005 0.0185 -6.7383 38 1 4.1632 0.5353 -5.3931 39 1 1.1603 0.2693 -5.4667 40 1 2.1727 1.3955 -4.5199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591027568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:38 Heat of formation + Delta-G solvation = -30.558329 kcal Electronic energy + Delta-G solvation = -16395.786690 eV Core-core repulsion = 14016.036948 eV Total energy + Delta-G solvation = -2379.749742 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.98873 -36.21974 -32.95867 -31.65279 -28.69522 -27.84859 -27.43525 -27.04930 -23.12253 -21.82094 -20.60343 -19.39623 -18.56762 -16.27609 -15.85782 -15.25195 -14.81906 -14.36428 -13.91284 -13.65768 -13.22314 -12.78267 -12.44265 -11.78564 -11.64656 -11.57550 -11.44698 -11.35890 -11.21203 -10.99511 -10.84268 -10.72574 -10.52595 -10.43994 -10.28869 -10.13276 -10.00341 -9.83516 -9.15755 -8.91190 -8.18817 -7.43690 -5.81428 -3.78231 3.44377 3.48010 3.51491 4.60242 4.61996 4.77581 4.85119 5.07031 5.37450 5.52601 5.56426 5.57198 5.68323 5.76788 5.81251 5.82580 5.89282 5.97077 5.98874 6.01238 6.05012 6.17810 6.21276 6.28360 6.37451 6.44881 6.54516 6.62263 6.64844 6.70282 6.94552 7.14053 7.67681 7.78816 8.13971 8.15415 8.29478 8.68574 9.27035 9.82428 11.30895 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026820 B = 0.007540 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.745025 B = 3712.784467 C = 4352.824932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 H 0.063 0.937 4 C 0.034 3.966 5 C -0.484 4.484 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.658 5.658 14 C 0.091 3.909 15 H 0.030 0.970 16 C -0.139 4.139 17 C -0.092 4.092 18 C -0.114 4.114 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.119 4.119 22 H 0.054 0.946 23 H 0.035 0.965 24 H 0.049 0.951 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.256 0.744 28 H 0.329 0.671 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 3.326 -15.604 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.522 4.522 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.288 5.288 14 C -0.019 4.019 15 H 0.048 0.952 16 C -0.197 4.197 17 C -0.111 4.111 18 C -0.152 4.152 19 C -0.165 4.165 20 C -0.160 4.160 21 C -0.157 4.157 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.147 0.853 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.697 3.318 -15.268 15.855 hybrid contribution -0.014 0.087 -0.041 0.097 sum -2.711 3.405 -15.310 15.916 Atomic orbital electron populations 1.22561 0.99829 1.01039 1.00423 1.21813 0.89601 0.98158 0.92480 0.91882 1.19096 0.96203 0.95312 0.89743 1.21125 0.91914 1.32588 1.06609 0.92314 1.25003 0.97823 0.96076 0.96128 1.69959 1.35160 1.37175 1.12422 0.86725 0.86663 0.77876 0.77048 1.20633 1.21714 1.20418 1.60578 1.57574 1.08318 1.02312 1.21505 0.96772 0.93850 0.89773 0.95177 1.21892 0.97835 0.99552 1.00426 1.21918 0.98728 0.96224 0.94196 1.22443 0.98678 0.99049 0.94992 1.22539 1.00736 0.96117 0.97109 1.22330 0.98157 0.96671 0.98824 1.22215 0.97721 0.99652 0.96152 0.92659 0.94546 0.93149 0.96712 0.96622 0.93393 0.85321 0.92648 0.91609 0.93665 0.91922 0.89832 0.91889 0.92217 0.92021 0.92454 0.91730 0.92549 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 9.15 37.16 0.34 -2.76 16 2 C 0.09 1.82 2.34 -67.71 -0.16 1.66 16 3 H 0.06 1.33 7.11 -51.93 -0.37 0.96 16 4 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 5 C -0.48 -13.74 8.84 -34.44 -0.30 -14.05 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.84 13.29 55.43 0.74 -27.11 16 9 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.66 -12.21 5.44 -99.73 -0.54 -12.75 16 14 C 0.09 1.41 2.13 -67.71 -0.14 1.27 16 15 H 0.03 0.47 7.11 -51.92 -0.37 0.10 16 16 C -0.14 -2.21 8.86 37.15 0.33 -1.88 16 17 C -0.09 -1.20 2.65 -89.50 -0.24 -1.44 16 18 C -0.11 -1.55 5.88 -25.03 -0.15 -1.69 16 19 C -0.13 -1.44 6.91 -24.70 -0.17 -1.61 16 20 C -0.12 -1.30 6.83 -25.07 -0.17 -1.47 16 21 C -0.12 -1.35 5.91 -25.61 -0.15 -1.50 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.04 0.55 7.43 -51.93 -0.39 0.17 16 24 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 25 H 0.01 0.41 8.14 -51.92 -0.42 -0.02 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.33 5.82 8.09 -39.30 -0.32 5.50 16 29 H 0.05 0.98 7.43 -51.93 -0.39 0.59 16 30 H 0.07 1.11 5.98 -51.93 -0.31 0.80 16 31 H 0.04 0.60 6.44 -51.93 -0.33 0.27 16 32 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 33 H 0.08 1.29 5.61 -51.93 -0.29 1.00 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.76 6.28 -51.93 -0.33 0.43 16 LS Contribution 306.25 15.07 4.62 4.62 Total: -1.00 -29.69 306.25 -8.54 -38.22 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.28 Total: 1.02 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -1.04 Total: -21.40 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.19 Total: -39.86 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.69 -8.54 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591027568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.662 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds