Wall clock time and date at job start Mon Mar 30 2020 02:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50696 * 109.47344 * 184.99683 * 4 2 1 6 6 H 1.08002 * 119.99611 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99982 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99909 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99930 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47363 * 60.00349 * 9 7 5 11 11 H 1.48503 * 109.47300 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47448 * 300.00298 * 9 7 5 13 13 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 14 14 C 1.46903 * 110.99880 * 85.00797 * 13 2 1 15 15 H 1.09008 * 109.46643 * 324.99496 * 14 13 2 16 16 C 1.52991 * 109.47675 * 84.99764 * 14 13 2 17 17 C 1.53007 * 109.46857 * 205.00062 * 14 13 2 18 18 C 1.54267 * 110.02811 * 297.90364 * 17 14 13 19 19 C 1.54966 * 104.15495 * 217.13750 * 18 17 14 20 20 C 1.54892 * 102.77993 * 37.89273 * 19 18 17 21 21 C 1.53873 * 110.03035 * 180.68466 * 17 14 13 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 24 24 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 26 26 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 27 27 H 0.97003 * 119.99535 * 179.97438 * 8 7 5 28 28 H 1.00892 * 111.00435 * 321.04633 * 13 2 1 29 29 H 1.09002 * 109.47159 * 299.99608 * 16 14 13 30 30 H 1.09000 * 109.47151 * 59.99871 * 16 14 13 31 31 H 1.09004 * 109.47193 * 180.02562 * 16 14 13 32 32 H 1.08994 * 110.01826 * 59.29512 * 17 14 13 33 33 H 1.08996 * 110.48524 * 335.78101 * 18 17 14 34 34 H 1.08996 * 110.48683 * 98.42953 * 18 17 14 35 35 H 1.08996 * 110.72690 * 279.57317 * 19 18 17 36 36 H 1.09002 * 110.92135 * 156.29584 * 19 18 17 37 37 H 1.08999 * 110.48352 * 203.41086 * 20 19 18 38 38 H 1.08992 * 110.60387 * 80.81390 * 20 19 18 39 39 H 1.08998 * 110.03346 * 238.56316 * 21 17 14 40 40 H 1.09004 * 110.03157 * 359.95260 * 21 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1928 2.3583 8 7 3.5763 -1.8371 3.3000 9 14 6.0919 -1.0605 2.4373 10 1 6.4844 0.3705 2.4966 11 1 6.5869 -1.7607 3.6497 12 1 6.6845 -1.6865 1.2281 13 7 2.0196 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3469 15 1 1.2576 0.9329 -2.2906 16 6 3.4111 0.9807 -2.3224 17 6 1.9769 -0.5798 -3.6454 18 6 3.1678 -1.5534 -3.7632 19 6 3.5138 -1.5479 -5.2738 20 6 3.2972 -0.0661 -5.6695 21 6 2.0587 0.3652 -4.8570 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6054 -0.2617 2.1370 26 1 1.7516 -1.7715 1.2056 27 1 4.0607 -2.2439 4.0354 28 1 1.4495 -1.4979 -1.4100 29 1 3.4863 1.5524 -1.3974 30 1 4.2359 0.2703 -2.3786 31 1 3.4575 1.6600 -3.1736 32 1 1.0384 -1.1336 -3.6666 33 1 4.0136 -1.1941 -3.1770 34 1 2.8765 -2.5531 -3.4414 35 1 2.8365 -2.1984 -5.8270 36 1 4.5502 -1.8436 -5.4368 37 1 3.1005 0.0185 -6.7383 38 1 4.1632 0.5353 -5.3931 39 1 1.1603 0.2693 -5.4667 40 1 2.1727 1.3955 -4.5199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591027568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:37 Heat of formation + Delta-G solvation = -47.704100 kcal Electronic energy + Delta-G solvation = -16396.530187 eV Core-core repulsion = 14016.036948 eV Total energy + Delta-G solvation = -2380.493239 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.12947 -37.66214 -34.88714 -33.26801 -29.87030 -29.40144 -28.73449 -28.46565 -25.10358 -23.12560 -21.66994 -20.91322 -19.70674 -18.36697 -17.10560 -16.53418 -16.38567 -16.03857 -15.14956 -15.02243 -14.46935 -14.31182 -13.97438 -13.56638 -13.25068 -13.17231 -12.88038 -12.63135 -12.55385 -12.48421 -12.38808 -11.94386 -11.87304 -11.77057 -11.68466 -11.37328 -11.20901 -11.13298 -11.04844 -10.96347 -10.45970 -8.91314 -8.07427 -6.11415 1.40834 1.43928 1.51140 2.48381 3.23993 3.40338 3.79827 3.86693 3.95240 4.25023 4.36170 4.40688 4.50288 4.55668 4.60527 4.68767 4.80202 4.84492 4.87016 4.91591 4.97313 5.03027 5.13729 5.18142 5.23227 5.24973 5.29866 5.35296 5.41661 5.51119 5.56578 5.56837 5.73830 5.75806 5.92932 6.39671 6.59441 6.82788 7.02610 7.53634 9.04778 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026820 B = 0.007540 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.745025 B = 3712.784467 C = 4352.824932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 H 0.055 0.945 4 C 0.039 3.961 5 C -0.493 4.493 6 H 0.057 0.943 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.674 5.674 14 C 0.094 3.906 15 H 0.037 0.963 16 C -0.135 4.135 17 C -0.087 4.087 18 C -0.117 4.117 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.116 4.116 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.052 0.948 25 H -0.012 1.012 26 H -0.011 1.011 27 H 0.257 0.743 28 H 0.333 0.667 29 H 0.030 0.970 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 4.034 -17.806 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 H 0.073 0.927 4 C 0.001 3.999 5 C -0.532 4.532 6 H 0.076 0.924 7 C -0.204 4.204 8 N -0.585 5.585 9 Si 0.780 3.220 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.304 5.304 14 C -0.015 4.015 15 H 0.055 0.945 16 C -0.193 4.193 17 C -0.105 4.105 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.154 4.154 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.066 0.934 28 H 0.152 0.848 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.599 4.037 -17.489 18.136 hybrid contribution -0.055 -0.147 0.648 0.666 sum -2.654 3.890 -16.842 17.488 Atomic orbital electron populations 1.22413 0.97071 1.01618 1.01692 1.21450 0.91739 0.96738 0.91054 0.92677 1.18984 0.95182 0.94055 0.91661 1.21459 0.93333 1.32012 1.06348 0.92435 1.25859 1.02775 0.95854 0.95870 1.70095 1.37051 1.38242 1.13111 0.85663 0.80811 0.78300 0.77184 1.19578 1.21298 1.19756 1.60416 1.57933 1.09180 1.02915 1.21546 0.96628 0.93668 0.89702 0.94498 1.21863 0.97660 0.99442 1.00328 1.21881 0.98702 0.96280 0.93679 1.22405 0.98059 0.98480 0.96547 1.22516 1.01196 0.97095 0.95227 1.22330 0.97726 0.95800 0.99865 1.22199 0.98788 0.99008 0.95364 0.92769 0.91830 0.92934 0.99362 0.99283 0.93385 0.84848 0.95040 0.93006 0.90963 0.91321 0.92158 0.92935 0.91120 0.91769 0.90565 0.92024 0.90984 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.65 9.15 71.98 0.66 -4.99 16 2 C 0.10 4.10 2.34 44.92 0.11 4.21 16 3 H 0.05 2.34 7.11 -2.39 -0.02 2.32 16 4 C 0.04 2.06 4.65 29.85 0.14 2.20 16 5 C -0.49 -28.59 8.84 25.60 0.23 -28.37 16 6 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 7 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 8 N -0.94 -59.20 13.29 21.45 0.28 -58.91 16 9 Si 0.95 46.46 29.54 68.60 2.03 48.48 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.67 -24.85 5.44 -469.45 -2.56 -27.41 16 14 C 0.09 2.78 2.13 44.91 0.10 2.88 16 15 H 0.04 1.06 7.11 -2.38 -0.02 1.05 16 16 C -0.14 -4.17 8.86 71.98 0.64 -3.53 16 17 C -0.09 -2.09 2.65 -10.07 -0.03 -2.12 16 18 C -0.12 -3.05 5.88 31.70 0.19 -2.86 16 19 C -0.12 -2.49 6.91 31.91 0.22 -2.27 16 20 C -0.12 -2.17 6.83 31.67 0.22 -1.95 16 21 C -0.12 -2.23 5.91 31.32 0.19 -2.05 16 22 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.06 1.79 7.43 -2.39 -0.02 1.77 16 24 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 25 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 26 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 27 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.33 11.67 8.09 -89.70 -0.73 10.94 16 29 H 0.03 1.09 7.43 -2.39 -0.02 1.07 16 30 H 0.05 1.73 5.98 -2.39 -0.01 1.72 16 31 H 0.07 1.80 6.44 -2.39 -0.02 1.78 16 32 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 33 H 0.06 1.85 5.61 -2.39 -0.01 1.84 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.31 6.28 -2.38 -0.01 1.29 16 Total: -1.00 -64.29 306.25 3.12 -61.17 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.26 Total: 15.54 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 3.11 Total: -38.87 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -2.27 Total: -86.32 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -64.29 3.12 -61.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591027568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.462 kcal (2) G-P(sol) polarization free energy of solvation -64.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds