Wall clock time and date at job start Mon Mar 30 2020 02:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46963 * 2 1 4 4 C 1.53003 * 109.47432 * 239.99877 * 2 1 3 5 5 C 1.50701 * 109.47192 * 175.00037 * 4 2 1 6 6 H 1.07991 * 119.99641 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99721 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99802 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00139 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47254 * 89.99918 * 9 7 5 11 11 H 1.48498 * 109.47189 * 209.99751 * 9 7 5 12 12 H 1.48496 * 109.47346 * 330.00264 * 9 7 5 13 13 N 1.46897 * 109.47074 * 120.00088 * 2 1 3 14 14 C 1.46907 * 110.99780 * 275.00336 * 13 2 1 15 15 C 1.52999 * 109.47170 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.47233 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.46991 * 179.97438 * 16 15 14 18 18 C 1.53786 * 113.61503 * 85.86302 * 17 16 15 19 19 C 1.54049 * 86.98426 * 140.01654 * 18 17 16 20 20 C 1.53781 * 113.61337 * 183.47096 * 17 16 15 21 21 H 1.09007 * 109.47120 * 60.00120 * 1 2 3 22 22 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47373 * 300.00151 * 1 2 3 24 24 H 1.08999 * 109.46935 * 295.00709 * 4 2 1 25 25 H 1.09002 * 109.47047 * 54.99702 * 4 2 1 26 26 H 0.96994 * 119.99742 * 179.97438 * 8 7 5 27 27 H 1.00892 * 111.00211 * 151.04875 * 13 2 1 28 28 H 1.08991 * 109.47208 * 59.99686 * 14 13 2 29 29 H 1.08997 * 109.46921 * 299.99549 * 14 13 2 30 30 H 1.09000 * 109.47196 * 59.99576 * 15 14 13 31 31 H 1.09006 * 109.46824 * 299.99706 * 15 14 13 32 32 H 1.09000 * 109.47147 * 59.99826 * 16 15 14 33 33 H 1.08997 * 109.47118 * 299.99647 * 16 15 14 34 34 H 1.09002 * 112.85017 * 314.66684 * 17 16 15 35 35 H 1.08992 * 113.61675 * 254.61398 * 18 17 16 36 36 H 1.09000 * 113.60973 * 25.51686 * 18 17 16 37 37 H 1.09005 * 113.62125 * 220.02158 * 19 18 17 38 38 H 1.09003 * 113.61268 * 89.11946 * 19 18 17 39 39 H 1.08999 * 113.61567 * 334.48261 * 20 17 16 40 40 H 1.09000 * 113.61379 * 105.30384 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2304 -1.1927 -2.3583 8 7 5.5411 -1.0994 -2.4139 9 14 3.3015 -2.1066 -3.6966 10 1 2.9408 -1.1607 -4.7831 11 1 4.1598 -3.1869 -4.2455 12 1 2.0653 -2.6986 -3.1252 13 7 2.0197 -0.6925 1.1994 14 6 2.0823 0.2226 2.3469 15 6 2.5961 -0.5328 3.5742 16 6 2.6620 0.4204 4.7691 17 6 3.1752 -0.3352 5.9966 18 6 4.7092 -0.3854 6.0922 19 6 4.5409 -0.1605 7.6069 20 6 3.1992 0.5150 7.2778 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.7516 -1.7715 -1.2056 25 1 1.6054 -0.2618 -2.1370 26 1 6.0254 -1.5062 -3.1493 27 1 2.9172 -1.1205 1.0288 28 1 1.0870 0.6163 2.5525 29 1 2.7587 1.0462 2.1183 30 1 3.5916 -0.9262 3.3683 31 1 1.9200 -1.3567 3.8030 32 1 1.6667 0.8142 4.9752 33 1 3.3383 1.2440 4.5401 34 1 2.6976 -1.3065 6.1259 35 1 5.1310 -1.3577 5.8380 36 1 5.2057 0.4393 5.5809 37 1 5.2793 0.5194 8.0322 38 1 4.4368 -1.0839 8.1765 39 1 3.2836 1.5853 7.0900 40 1 2.4018 0.2699 7.9794 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688418625.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:20 Heat of formation + Delta-G solvation = -15.450906 kcal Electronic energy + Delta-G solvation = -15431.423789 eV Core-core repulsion = 13052.329154 eV Total energy + Delta-G solvation = -2379.094635 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.01946 -36.86458 -33.84957 -32.30600 -30.00463 -27.85345 -26.23565 -25.62744 -23.05777 -22.04571 -20.82332 -19.39605 -19.27096 -16.80241 -15.77441 -15.32798 -14.98442 -14.53266 -14.33801 -13.98964 -13.04095 -12.73855 -12.51739 -12.45082 -12.36980 -12.04597 -11.75449 -11.53714 -11.42611 -11.05124 -10.94717 -10.81732 -10.56293 -10.49987 -10.37794 -10.10291 -9.89507 -9.72698 -9.39863 -9.18682 -8.55179 -7.63778 -6.06198 -4.04492 3.31355 3.39043 3.44328 4.45209 4.49181 4.58678 4.65822 4.78066 4.95303 5.29103 5.30853 5.40871 5.50341 5.58376 5.67949 5.74694 5.77790 5.84107 5.87592 5.90376 5.97997 6.04602 6.13250 6.17108 6.23409 6.28672 6.42729 6.47068 6.55785 6.61395 6.75114 6.82613 7.19170 7.34027 7.77204 7.97124 8.29606 8.49751 8.95918 9.56689 11.06887 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033348 B = 0.004869 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.418649 B = 5749.442687 C = 6395.510554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.095 3.905 3 H 0.033 0.967 4 C -0.017 4.017 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.686 5.686 14 C 0.060 3.940 15 C -0.115 4.115 16 C -0.107 4.107 17 C -0.108 4.108 18 C -0.138 4.138 19 C -0.144 4.144 20 C -0.139 4.139 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.039 0.961 24 H 0.025 0.975 25 H 0.016 0.984 26 H 0.263 0.737 27 H 0.357 0.643 28 H 0.059 0.941 29 H 0.022 0.978 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 2.177 15.810 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.015 4.015 3 H 0.051 0.949 4 C -0.055 4.055 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.709 3.291 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.320 5.320 14 C -0.070 4.070 15 C -0.153 4.153 16 C -0.145 4.145 17 C -0.127 4.127 18 C -0.176 4.176 19 C -0.182 4.182 20 C -0.177 4.177 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.178 0.822 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.219 1.875 15.858 17.137 hybrid contribution 0.486 0.107 -1.043 1.155 sum -5.734 1.982 14.815 16.009 Atomic orbital electron populations 1.21825 0.96745 1.01281 0.99681 1.21379 0.93172 0.96002 0.90903 0.94880 1.19770 0.96939 0.96248 0.92510 1.21092 0.89943 1.35232 1.09855 0.91307 1.25011 0.94691 0.95682 0.97889 1.69919 1.06611 1.45287 1.32302 0.86753 0.80318 0.79884 0.82191 1.20413 1.21446 1.18842 1.60577 1.34966 1.32183 1.04293 1.21930 0.99365 0.94318 0.91389 1.21535 1.01579 0.98431 0.93742 1.21529 1.00889 0.98130 0.93965 1.22549 0.96231 0.99331 0.94566 1.23027 0.96411 1.02204 0.95924 1.22861 0.97756 1.00653 0.96915 1.22947 0.97487 0.99564 0.97667 0.93402 0.92708 0.94156 0.95653 0.96592 0.92745 0.82232 0.92236 0.95996 0.92004 0.91576 0.92161 0.92112 0.89402 0.91552 0.90095 0.91805 0.90480 0.90290 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.41 37.16 0.35 -2.05 16 2 C 0.10 1.97 2.59 -67.71 -0.18 1.79 16 3 H 0.03 0.71 7.80 -51.93 -0.40 0.31 16 4 C -0.02 -0.41 3.64 -27.88 -0.10 -0.51 16 5 C -0.52 -14.71 8.67 -34.44 -0.30 -15.00 16 6 H 0.07 2.07 7.73 -52.49 -0.41 1.67 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 9 Si 0.88 21.84 27.47 -169.99 -4.67 17.18 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 13 N -0.69 -13.41 6.31 -106.73 -0.67 -14.08 16 14 C 0.06 0.98 5.48 -3.82 -0.02 0.96 16 15 C -0.11 -1.61 5.47 -26.73 -0.15 -1.75 16 16 C -0.11 -1.24 5.04 -26.73 -0.13 -1.38 16 17 C -0.11 -1.13 3.64 -89.80 -0.33 -1.46 16 18 C -0.14 -1.44 7.65 -25.77 -0.20 -1.64 16 19 C -0.14 -1.30 8.09 -25.78 -0.21 -1.51 16 20 C -0.14 -1.28 7.64 -25.92 -0.20 -1.47 16 21 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.04 0.63 7.45 -51.93 -0.39 0.25 16 24 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 25 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.36 7.71 7.21 -39.30 -0.28 7.43 16 28 H 0.06 0.92 7.43 -51.93 -0.39 0.54 16 29 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.72 7.88 -51.93 -0.41 0.31 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.87 7.92 -51.93 -0.41 0.46 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -29.15 315.37 -9.06 -38.21 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.69 Total: 2.97 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -1.56 Total: -22.13 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.10 Total: -40.97 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.15 -9.06 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688418625.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.754 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds