Wall clock time and date at job start Mon Mar 30 2020 02:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46963 * 2 1 4 4 C 1.53003 * 109.47432 * 239.99877 * 2 1 3 5 5 C 1.50701 * 109.47192 * 175.00037 * 4 2 1 6 6 H 1.07991 * 119.99641 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99721 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99802 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00139 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47254 * 89.99918 * 9 7 5 11 11 H 1.48498 * 109.47189 * 209.99751 * 9 7 5 12 12 H 1.48496 * 109.47346 * 330.00264 * 9 7 5 13 13 N 1.46897 * 109.47074 * 120.00088 * 2 1 3 14 14 C 1.46907 * 110.99780 * 275.00336 * 13 2 1 15 15 C 1.52999 * 109.47170 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.47233 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.46991 * 179.97438 * 16 15 14 18 18 C 1.53786 * 113.61503 * 85.86302 * 17 16 15 19 19 C 1.54049 * 86.98426 * 140.01654 * 18 17 16 20 20 C 1.53781 * 113.61337 * 183.47096 * 17 16 15 21 21 H 1.09007 * 109.47120 * 60.00120 * 1 2 3 22 22 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47373 * 300.00151 * 1 2 3 24 24 H 1.08999 * 109.46935 * 295.00709 * 4 2 1 25 25 H 1.09002 * 109.47047 * 54.99702 * 4 2 1 26 26 H 0.96994 * 119.99742 * 179.97438 * 8 7 5 27 27 H 1.00892 * 111.00211 * 151.04875 * 13 2 1 28 28 H 1.08991 * 109.47208 * 59.99686 * 14 13 2 29 29 H 1.08997 * 109.46921 * 299.99549 * 14 13 2 30 30 H 1.09000 * 109.47196 * 59.99576 * 15 14 13 31 31 H 1.09006 * 109.46824 * 299.99706 * 15 14 13 32 32 H 1.09000 * 109.47147 * 59.99826 * 16 15 14 33 33 H 1.08997 * 109.47118 * 299.99647 * 16 15 14 34 34 H 1.09002 * 112.85017 * 314.66684 * 17 16 15 35 35 H 1.08992 * 113.61675 * 254.61398 * 18 17 16 36 36 H 1.09000 * 113.60973 * 25.51686 * 18 17 16 37 37 H 1.09005 * 113.62125 * 220.02158 * 19 18 17 38 38 H 1.09003 * 113.61268 * 89.11946 * 19 18 17 39 39 H 1.08999 * 113.61567 * 334.48261 * 20 17 16 40 40 H 1.09000 * 113.61379 * 105.30384 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2304 -1.1927 -2.3583 8 7 5.5411 -1.0994 -2.4139 9 14 3.3015 -2.1066 -3.6966 10 1 2.9408 -1.1607 -4.7831 11 1 4.1598 -3.1869 -4.2455 12 1 2.0653 -2.6986 -3.1252 13 7 2.0197 -0.6925 1.1994 14 6 2.0823 0.2226 2.3469 15 6 2.5961 -0.5328 3.5742 16 6 2.6620 0.4204 4.7691 17 6 3.1752 -0.3352 5.9966 18 6 4.7092 -0.3854 6.0922 19 6 4.5409 -0.1605 7.6069 20 6 3.1992 0.5150 7.2778 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.7516 -1.7715 -1.2056 25 1 1.6054 -0.2618 -2.1370 26 1 6.0254 -1.5062 -3.1493 27 1 2.9172 -1.1205 1.0288 28 1 1.0870 0.6163 2.5525 29 1 2.7587 1.0462 2.1183 30 1 3.5916 -0.9262 3.3683 31 1 1.9200 -1.3567 3.8030 32 1 1.6667 0.8142 4.9752 33 1 3.3383 1.2440 4.5401 34 1 2.6976 -1.3065 6.1259 35 1 5.1310 -1.3577 5.8380 36 1 5.2057 0.4393 5.5809 37 1 5.2793 0.5194 8.0322 38 1 4.4368 -1.0839 8.1765 39 1 3.2836 1.5853 7.0900 40 1 2.4018 0.2699 7.9794 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688418625.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:19 Heat of formation + Delta-G solvation = -32.143118 kcal Electronic energy + Delta-G solvation = -15432.147618 eV Core-core repulsion = 13052.329154 eV Total energy + Delta-G solvation = -2379.818464 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85675 -38.41787 -35.37222 -34.22617 -31.46388 -29.66440 -27.37719 -26.42486 -24.75182 -23.36034 -22.01720 -20.94699 -20.19942 -18.97717 -16.92969 -16.54914 -16.33427 -16.20201 -15.63392 -15.29980 -14.62541 -14.32564 -13.82093 -13.71470 -13.54281 -13.31621 -13.27136 -13.06742 -12.60600 -12.47405 -12.40444 -12.08583 -11.98949 -11.75167 -11.62877 -11.37150 -11.29358 -11.22948 -10.94985 -10.79870 -10.74368 -9.22691 -8.29617 -6.33208 1.35983 1.38373 1.50691 2.36489 3.04141 3.38368 3.74777 3.82867 3.87567 4.00433 4.16822 4.26883 4.28860 4.45872 4.55288 4.66967 4.72491 4.77408 4.83855 4.89889 4.91883 4.95748 5.02085 5.07675 5.10845 5.11219 5.13879 5.21565 5.32304 5.33296 5.43480 5.50745 5.51431 5.67203 5.68956 6.22803 6.39115 6.58250 6.73231 7.31435 8.86693 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033348 B = 0.004869 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.418649 B = 5749.442687 C = 6395.510554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.094 3.906 3 H 0.017 0.983 4 C -0.013 4.013 5 C -0.527 4.527 6 H 0.031 0.969 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.248 1.248 13 N -0.687 5.687 14 C 0.061 3.939 15 C -0.106 4.106 16 C -0.100 4.100 17 C -0.111 4.111 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.133 4.133 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.024 0.976 25 H 0.023 0.977 26 H 0.266 0.734 27 H 0.340 0.660 28 H 0.076 0.924 29 H 0.006 0.994 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.896 1.913 16.383 18.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.016 4.016 3 H 0.036 0.964 4 C -0.050 4.050 5 C -0.565 4.565 6 H 0.049 0.951 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.171 1.171 13 N -0.319 5.319 14 C -0.068 4.068 15 C -0.144 4.144 16 C -0.138 4.138 17 C -0.129 4.129 18 C -0.185 4.185 19 C -0.176 4.176 20 C -0.171 4.171 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.094 0.906 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.377 1.625 16.450 18.532 hybrid contribution 1.213 0.239 -1.169 1.702 sum -7.163 1.864 15.282 16.980 Atomic orbital electron populations 1.21732 0.93562 1.01956 1.01349 1.21372 0.95615 0.94590 0.89977 0.96445 1.19715 0.94069 0.96637 0.94603 1.21354 0.92185 1.34225 1.08690 0.95088 1.25957 0.95510 0.96793 1.00652 1.70067 1.08530 1.46886 1.33532 0.85653 0.79329 0.78625 0.78977 1.19322 1.21119 1.17147 1.60705 1.33720 1.32738 1.04743 1.22026 1.00035 0.93648 0.91125 1.21460 1.00479 0.98795 0.93683 1.21470 1.01525 0.97452 0.93376 1.22563 0.95976 0.99646 0.94701 1.23074 0.96513 1.01567 0.97387 1.22857 0.97862 1.01201 0.95688 1.22924 0.97867 0.99428 0.96843 0.92099 0.92460 0.92222 0.95739 0.95921 0.92567 0.84187 0.90552 0.97528 0.93682 0.91172 0.90982 0.92669 0.89178 0.92232 0.90905 0.91144 0.89624 0.90081 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.41 71.98 0.68 -3.45 16 2 C 0.09 3.83 2.59 44.92 0.12 3.94 16 3 H 0.02 0.76 7.80 -2.39 -0.02 0.74 16 4 C -0.01 -0.60 3.64 29.85 0.11 -0.49 16 5 C -0.53 -30.22 8.67 25.60 0.22 -30.00 16 6 H 0.03 1.96 7.73 -2.91 -0.02 1.93 16 7 C 0.01 0.46 5.47 84.65 0.46 0.93 16 8 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 9 Si 0.95 44.70 27.47 68.60 1.88 46.58 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 13 N -0.69 -26.78 6.31 -491.57 -3.10 -29.89 16 14 C 0.06 1.98 5.48 86.30 0.47 2.45 16 15 C -0.11 -2.93 5.47 30.59 0.17 -2.76 16 16 C -0.10 -2.22 5.04 30.59 0.15 -2.07 16 17 C -0.11 -2.17 3.64 -10.26 -0.04 -2.21 16 18 C -0.15 -3.02 7.65 31.21 0.24 -2.78 16 19 C -0.14 -2.27 8.09 31.21 0.25 -2.02 16 20 C -0.13 -2.18 7.64 31.12 0.24 -1.94 16 21 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 22 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.06 1.69 7.45 -2.39 -0.02 1.67 16 24 H 0.02 1.17 7.20 -2.39 -0.02 1.15 16 25 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 26 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 27 H 0.34 15.13 7.21 -89.70 -0.65 14.49 16 28 H 0.08 2.22 7.43 -2.39 -0.02 2.20 16 29 H 0.01 0.23 8.05 -2.39 -0.02 0.21 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.29 7.88 -2.39 -0.02 1.27 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.58 7.92 -2.39 -0.02 1.56 16 37 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -62.76 315.37 2.42 -60.34 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.27 Total: 22.71 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 3.07 Total: -40.41 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -2.80 Total: -89.22 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -62.76 2.42 -60.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688418625.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.198 kcal (2) G-P(sol) polarization free energy of solvation -62.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds