Wall clock time and date at job start Mon Mar 30 2020 02:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47283 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00076 * 2 1 3 5 5 C 1.50698 * 109.47265 * 185.00055 * 4 2 1 6 6 H 1.08004 * 119.99892 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00148 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00173 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00208 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46769 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47024 * 120.00040 * 9 7 5 12 12 H 1.48487 * 109.47291 * 240.00173 * 9 7 5 13 13 N 1.46907 * 109.47211 * 239.99634 * 2 1 3 14 14 C 1.46902 * 110.99665 * 84.99857 * 13 2 1 15 15 C 1.53001 * 109.46901 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 15 14 18 18 C 1.53785 * 113.61570 * 274.13981 * 17 16 15 19 19 C 1.53956 * 87.02052 * 220.04627 * 18 17 16 20 20 C 1.53777 * 87.11087 * 25.36196 * 19 18 17 21 21 H 1.08997 * 109.47283 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47224 * 300.00388 * 1 2 3 23 23 H 1.09000 * 109.47272 * 60.00043 * 1 2 3 24 24 H 1.09008 * 109.46725 * 304.99521 * 4 2 1 25 25 H 1.08993 * 109.46987 * 64.99643 * 4 2 1 26 26 H 0.97001 * 120.00781 * 179.97438 * 8 7 5 27 27 H 1.00898 * 110.99982 * 208.95288 * 13 2 1 28 28 H 1.09001 * 109.46712 * 60.00151 * 14 13 2 29 29 H 1.09002 * 109.47411 * 300.00262 * 14 13 2 30 30 H 1.09001 * 109.46652 * 60.00371 * 15 14 13 31 31 H 1.08992 * 109.47514 * 300.00460 * 15 14 13 32 32 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 33 33 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 34 34 H 1.09001 * 112.85054 * 45.33402 * 17 16 15 35 35 H 1.09000 * 113.61195 * 334.56762 * 18 17 16 36 36 H 1.09001 * 113.61520 * 105.46896 * 18 17 16 37 37 H 1.09005 * 113.53676 * 270.80967 * 19 18 17 38 38 H 1.08993 * 113.66514 * 139.93360 * 19 18 17 39 39 H 1.09011 * 113.61618 * 220.09268 * 20 19 18 40 40 H 1.09000 * 113.69499 * 89.19666 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1926 2.3583 8 7 3.5764 -1.8369 3.3000 9 14 6.0921 -1.0614 2.4367 10 1 6.5837 -0.2920 1.2656 11 1 6.4870 -0.3649 3.6873 12 1 6.6854 -2.4225 2.4197 13 7 2.0197 -0.6926 -1.1994 14 6 2.0824 0.2225 -2.3469 15 6 2.5962 -0.5330 -3.5742 16 6 2.6622 0.4202 -4.7691 17 6 3.1753 -0.3354 -5.9965 18 6 4.7094 -0.3857 -6.0921 19 6 4.5423 -0.1592 -7.6057 20 6 3.1995 0.5147 -7.2778 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -0.2616 2.1370 25 1 1.7516 -1.7714 1.2056 26 1 4.0607 -2.2437 4.0354 27 1 2.9173 -1.1206 -1.0287 28 1 2.7588 1.0461 -2.1182 29 1 1.0870 0.6162 -2.5526 30 1 1.9201 -1.3568 -3.8029 31 1 3.5916 -0.9264 -3.3683 32 1 1.6669 0.8140 -4.9752 33 1 3.3385 1.2437 -4.5401 34 1 2.6978 -1.3067 -6.1259 35 1 5.2060 0.4382 -5.5795 36 1 5.1310 -1.3585 -5.8392 37 1 4.4397 -1.0829 -8.1754 38 1 5.2802 0.5214 -8.0303 39 1 2.4038 0.2677 -7.9807 40 1 3.2810 1.5853 -7.0899 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688418626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:21 Heat of formation + Delta-G solvation = -18.888196 kcal Electronic energy + Delta-G solvation = -15425.818100 eV Core-core repulsion = 13046.574413 eV Total energy + Delta-G solvation = -2379.243687 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.05190 -36.77679 -33.82897 -32.32854 -29.81545 -27.36000 -26.18973 -25.65283 -23.23758 -22.22736 -20.82984 -19.42230 -19.25360 -16.33997 -15.79893 -15.35963 -14.95015 -14.62556 -14.36008 -13.90487 -13.16674 -12.71567 -12.54983 -12.48356 -12.14799 -11.81399 -11.55339 -11.42470 -11.24832 -11.00579 -10.90746 -10.76422 -10.60419 -10.54430 -10.46603 -10.16729 -10.09483 -9.90720 -9.16471 -9.03181 -8.38541 -7.57317 -6.01459 -4.04400 3.29470 3.37311 3.40436 4.44209 4.47140 4.55559 4.63101 4.75370 4.98278 5.28683 5.32740 5.40788 5.49226 5.55857 5.64239 5.73034 5.77554 5.82245 5.88861 5.95572 5.98546 6.06632 6.15758 6.21835 6.27775 6.37170 6.41030 6.52486 6.55927 6.63908 6.97221 6.99539 7.57499 7.66664 7.98796 8.12372 8.33945 8.41093 9.02036 9.59745 11.09557 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.005304 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.889867 B = 5277.888403 C = 6229.703198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.027 0.973 4 C 0.020 3.980 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.685 5.685 14 C 0.059 3.941 15 C -0.115 4.115 16 C -0.107 4.107 17 C -0.108 4.108 18 C -0.138 4.138 19 C -0.144 4.144 20 C -0.139 4.139 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.035 0.965 24 H 0.021 0.979 25 H 0.026 0.974 26 H 0.260 0.740 27 H 0.353 0.647 28 H 0.019 0.981 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 3.899 -17.763 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.018 4.018 5 C -0.561 4.561 6 H 0.070 0.930 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.319 5.319 14 C -0.071 4.071 15 C -0.153 4.153 16 C -0.145 4.145 17 C -0.127 4.127 18 C -0.176 4.176 19 C -0.182 4.182 20 C -0.177 4.177 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.174 0.826 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.508 3.552 -17.753 18.168 hybrid contribution 1.841 0.597 0.417 1.980 sum 0.333 4.149 -17.337 17.829 Atomic orbital electron populations 1.21787 0.96827 1.01250 0.99373 1.21606 0.93308 0.95822 0.91576 0.95470 1.19286 0.95404 0.96194 0.90867 1.21218 0.92275 1.34360 1.08230 0.93001 1.24988 0.98227 0.95205 0.95703 1.69969 1.35390 1.35706 1.11973 0.86583 0.86005 0.77780 0.77905 1.19868 1.21053 1.20940 1.60566 1.34618 1.32233 1.04457 1.21940 0.99361 0.94265 0.91500 1.21540 1.01474 0.98478 0.93796 1.21532 1.00920 0.98098 0.93976 1.22551 0.96157 0.99380 0.94593 1.23011 0.96471 1.02110 0.95989 1.22841 0.97777 1.00670 0.96881 1.22948 0.97484 0.99558 0.97677 0.92696 0.93413 0.94567 0.96118 0.95606 0.93015 0.82633 0.96243 0.92206 0.91500 0.92164 0.92102 0.92186 0.89360 0.90172 0.91592 0.90465 0.91817 0.91852 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.41 37.16 0.35 -2.16 16 2 C 0.09 1.86 2.59 -67.71 -0.18 1.68 16 3 H 0.03 0.60 7.80 -51.93 -0.40 0.20 16 4 C 0.02 0.51 4.57 -27.88 -0.13 0.39 16 5 C -0.52 -14.57 8.12 -34.44 -0.28 -14.85 16 6 H 0.05 1.41 7.49 -52.48 -0.39 1.02 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.69 -13.62 6.31 -106.72 -0.67 -14.29 16 14 C 0.06 0.97 5.48 -3.82 -0.02 0.95 16 15 C -0.11 -1.59 5.47 -26.73 -0.15 -1.73 16 16 C -0.11 -1.23 5.04 -26.73 -0.13 -1.36 16 17 C -0.11 -1.11 3.64 -89.81 -0.33 -1.43 16 18 C -0.14 -1.39 7.65 -25.82 -0.20 -1.59 16 19 C -0.14 -1.26 8.09 -25.83 -0.21 -1.47 16 20 C -0.14 -1.25 7.65 -25.92 -0.20 -1.45 16 21 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 24 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.35 7.59 7.21 -39.29 -0.28 7.31 16 28 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 29 H 0.06 0.94 7.44 -51.93 -0.39 0.56 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.69 7.88 -51.93 -0.41 0.28 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.82 7.92 -51.93 -0.41 0.41 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 40 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 318.96 15.07 4.81 4.81 Total: -1.00 -28.85 318.96 -9.44 -38.28 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.72 Total: 2.03 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -1.56 Total: -21.39 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.06 Total: -40.28 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.85 -9.44 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688418626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.394 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds