Wall clock time and date at job start Mon Mar 30 2020 02:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47283 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00076 * 2 1 3 5 5 C 1.50698 * 109.47265 * 185.00055 * 4 2 1 6 6 H 1.08004 * 119.99892 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00148 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00173 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00208 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46769 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47024 * 120.00040 * 9 7 5 12 12 H 1.48487 * 109.47291 * 240.00173 * 9 7 5 13 13 N 1.46907 * 109.47211 * 239.99634 * 2 1 3 14 14 C 1.46902 * 110.99665 * 84.99857 * 13 2 1 15 15 C 1.53001 * 109.46901 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 15 14 18 18 C 1.53785 * 113.61570 * 274.13981 * 17 16 15 19 19 C 1.53956 * 87.02052 * 220.04627 * 18 17 16 20 20 C 1.53777 * 87.11087 * 25.36196 * 19 18 17 21 21 H 1.08997 * 109.47283 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47224 * 300.00388 * 1 2 3 23 23 H 1.09000 * 109.47272 * 60.00043 * 1 2 3 24 24 H 1.09008 * 109.46725 * 304.99521 * 4 2 1 25 25 H 1.08993 * 109.46987 * 64.99643 * 4 2 1 26 26 H 0.97001 * 120.00781 * 179.97438 * 8 7 5 27 27 H 1.00898 * 110.99982 * 208.95288 * 13 2 1 28 28 H 1.09001 * 109.46712 * 60.00151 * 14 13 2 29 29 H 1.09002 * 109.47411 * 300.00262 * 14 13 2 30 30 H 1.09001 * 109.46652 * 60.00371 * 15 14 13 31 31 H 1.08992 * 109.47514 * 300.00460 * 15 14 13 32 32 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 33 33 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 34 34 H 1.09001 * 112.85054 * 45.33402 * 17 16 15 35 35 H 1.09000 * 113.61195 * 334.56762 * 18 17 16 36 36 H 1.09001 * 113.61520 * 105.46896 * 18 17 16 37 37 H 1.09005 * 113.53676 * 270.80967 * 19 18 17 38 38 H 1.08993 * 113.66514 * 139.93360 * 19 18 17 39 39 H 1.09011 * 113.61618 * 220.09268 * 20 19 18 40 40 H 1.09000 * 113.69499 * 89.19666 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1926 2.3583 8 7 3.5764 -1.8369 3.3000 9 14 6.0921 -1.0614 2.4367 10 1 6.5837 -0.2920 1.2656 11 1 6.4870 -0.3649 3.6873 12 1 6.6854 -2.4225 2.4197 13 7 2.0197 -0.6926 -1.1994 14 6 2.0824 0.2225 -2.3469 15 6 2.5962 -0.5330 -3.5742 16 6 2.6622 0.4202 -4.7691 17 6 3.1753 -0.3354 -5.9965 18 6 4.7094 -0.3857 -6.0921 19 6 4.5423 -0.1592 -7.6057 20 6 3.1995 0.5147 -7.2778 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -0.2616 2.1370 25 1 1.7516 -1.7714 1.2056 26 1 4.0607 -2.2437 4.0354 27 1 2.9173 -1.1206 -1.0287 28 1 2.7588 1.0461 -2.1182 29 1 1.0870 0.6162 -2.5526 30 1 1.9201 -1.3568 -3.8029 31 1 3.5916 -0.9264 -3.3683 32 1 1.6669 0.8140 -4.9752 33 1 3.3385 1.2437 -4.5401 34 1 2.6978 -1.3067 -6.1259 35 1 5.2060 0.4382 -5.5795 36 1 5.1310 -1.3585 -5.8392 37 1 4.4397 -1.0829 -8.1754 38 1 5.2802 0.5214 -8.0303 39 1 2.4038 0.2677 -7.9807 40 1 3.2810 1.5853 -7.0899 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688418626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:21 Heat of formation + Delta-G solvation = -34.615554 kcal Electronic energy + Delta-G solvation = -15426.500090 eV Core-core repulsion = 13046.574413 eV Total energy + Delta-G solvation = -2379.925677 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.84861 -38.37620 -35.39580 -34.16537 -31.25578 -29.30241 -27.33343 -26.41492 -25.11546 -23.41292 -21.99797 -20.98120 -20.18424 -18.53128 -16.96418 -16.62301 -16.31903 -16.17456 -15.59656 -15.18883 -14.83313 -13.93685 -13.76281 -13.58367 -13.44478 -13.27801 -13.18753 -13.02072 -12.64407 -12.54666 -12.35959 -12.33884 -12.04141 -11.92173 -11.61050 -11.36139 -11.25714 -11.03045 -10.93396 -10.74669 -10.58927 -9.18125 -8.20633 -6.31481 1.38298 1.38973 1.51158 2.39228 3.10710 3.40537 3.76251 3.83968 3.88974 4.01910 4.20055 4.30098 4.32606 4.48864 4.60258 4.69396 4.75056 4.79083 4.85761 4.91050 4.93090 4.97157 5.02429 5.09386 5.12205 5.15503 5.20737 5.32747 5.33648 5.42663 5.47729 5.52634 5.57438 5.69930 5.83043 6.19997 6.43825 6.65758 6.83742 7.37486 8.91329 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.005304 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.889867 B = 5277.888403 C = 6229.703198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.093 3.907 3 H 0.022 0.978 4 C 0.027 3.973 5 C -0.535 4.535 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.962 3.038 10 H -0.264 1.264 11 H -0.280 1.280 12 H -0.278 1.278 13 N -0.688 5.688 14 C 0.060 3.940 15 C -0.106 4.106 16 C -0.100 4.100 17 C -0.111 4.111 18 C -0.145 4.145 19 C -0.139 4.139 20 C -0.134 4.134 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.061 0.939 24 H -0.005 1.005 25 H -0.003 1.003 26 H 0.263 0.737 27 H 0.341 0.659 28 H 0.013 0.987 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 4.643 -19.530 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.017 4.017 3 H 0.040 0.960 4 C -0.010 4.010 5 C -0.573 4.573 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.787 3.213 10 H -0.188 1.188 11 H -0.205 1.205 12 H -0.203 1.203 13 N -0.320 5.320 14 C -0.069 4.069 15 C -0.144 4.144 16 C -0.138 4.138 17 C -0.130 4.130 18 C -0.183 4.183 19 C -0.177 4.177 20 C -0.172 4.172 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.013 0.987 25 H 0.016 0.984 26 H 0.072 0.928 27 H 0.160 0.840 28 H 0.032 0.968 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.980 4.309 -19.541 20.034 hybrid contribution 1.639 0.359 0.976 1.941 sum 0.659 4.668 -18.565 19.155 Atomic orbital electron populations 1.21701 0.94422 1.01417 1.00923 1.21450 0.95225 0.94695 0.90335 0.96027 1.19145 0.94905 0.94720 0.92272 1.21540 0.93279 1.34180 1.08314 0.92642 1.25895 1.03442 0.94737 0.95271 1.70097 1.37539 1.36680 1.12725 0.85450 0.79685 0.78010 0.78192 1.18831 1.20542 1.20324 1.60632 1.33808 1.32944 1.04659 1.22043 1.00066 0.93758 0.91022 1.21462 1.00647 0.98697 0.93616 1.21469 1.01484 0.97513 0.93338 1.22561 0.96145 0.99563 0.94703 1.23050 0.96327 1.01689 0.97224 1.22837 0.97817 1.01139 0.95880 1.22932 0.97868 0.99492 0.96890 0.93208 0.92882 0.91996 0.98685 0.98439 0.92769 0.84018 0.96829 0.91013 0.91574 0.93133 0.91280 0.92306 0.89390 0.90616 0.92121 0.89783 0.91106 0.90962 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.41 71.98 0.68 -3.92 16 2 C 0.09 3.98 2.59 44.91 0.12 4.10 16 3 H 0.02 0.95 7.80 -2.39 -0.02 0.93 16 4 C 0.03 1.44 4.57 29.85 0.14 1.58 16 5 C -0.54 -30.21 8.12 25.60 0.21 -30.00 16 6 H 0.06 3.03 7.49 -2.91 -0.02 3.00 16 7 C 0.00 0.27 5.46 84.65 0.46 0.73 16 8 N -0.93 -56.74 13.29 21.44 0.28 -56.45 16 9 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.69 -27.11 6.31 -491.55 -3.10 -30.21 16 14 C 0.06 1.90 5.48 86.30 0.47 2.38 16 15 C -0.11 -2.80 5.47 30.59 0.17 -2.64 16 16 C -0.10 -2.10 5.04 30.59 0.15 -1.95 16 17 C -0.11 -2.07 3.64 -10.27 -0.04 -2.11 16 18 C -0.15 -2.71 7.65 31.18 0.24 -2.47 16 19 C -0.14 -2.13 8.09 31.18 0.25 -1.88 16 20 C -0.13 -2.09 7.65 31.12 0.24 -1.85 16 21 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.06 1.92 7.45 -2.39 -0.02 1.90 16 24 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 25 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 26 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.34 14.77 7.21 -89.70 -0.65 14.12 16 28 H 0.01 0.45 8.06 -2.39 -0.02 0.43 16 29 H 0.07 2.10 7.44 -2.39 -0.02 2.08 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.26 7.88 -2.39 -0.02 1.24 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.47 7.92 -2.39 -0.02 1.45 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 Total: -1.00 -61.41 318.96 2.61 -58.80 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.32 Total: 19.52 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 3.09 Total: -38.03 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -2.82 Total: -86.66 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -61.41 2.61 -58.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688418626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.180 kcal (2) G-P(sol) polarization free energy of solvation -61.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds