Wall clock time and date at job start Mon Mar 30 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 111.00065 * 2 1 4 4 C 1.53003 * 109.46656 * 293.95099 * 3 2 1 5 5 C 1.53003 * 109.46845 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46775 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00300 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99870 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00334 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99748 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47015 * 90.00082 * 10 8 6 12 12 H 1.48502 * 109.47027 * 210.00076 * 10 8 6 13 13 H 1.48496 * 109.47148 * 329.99962 * 10 8 6 14 14 C 1.46900 * 110.99824 * 123.94887 * 2 1 3 15 15 C 1.52998 * 109.47088 * 66.04718 * 14 2 1 16 16 C 1.53003 * 109.46991 * 179.97438 * 15 14 2 17 17 C 1.53786 * 113.61503 * 85.86302 * 16 15 14 18 18 C 1.54049 * 86.98426 * 140.01654 * 17 16 15 19 19 C 1.53781 * 113.61337 * 183.47096 * 16 15 14 20 20 H 1.09007 * 109.47085 * 296.05217 * 1 2 3 21 21 H 1.09004 * 109.46535 * 56.04833 * 1 2 3 22 22 H 1.08994 * 109.47197 * 176.05309 * 1 2 3 23 23 H 1.08995 * 109.47579 * 53.94676 * 3 2 1 24 24 H 1.09002 * 109.47253 * 173.95047 * 3 2 1 25 25 H 1.08997 * 109.47260 * 299.99872 * 4 3 2 26 26 H 1.08992 * 109.47327 * 60.00162 * 4 3 2 27 27 H 1.08997 * 109.46820 * 299.99815 * 5 4 3 28 28 H 1.08992 * 109.47293 * 59.99814 * 5 4 3 29 29 H 0.97000 * 120.00310 * 179.97438 * 9 8 6 30 30 H 1.09000 * 109.47156 * 306.04688 * 14 2 1 31 31 H 1.09006 * 109.47009 * 186.04729 * 14 2 1 32 32 H 1.09000 * 109.47147 * 59.99964 * 15 14 2 33 33 H 1.08997 * 109.47118 * 299.99785 * 15 14 2 34 34 H 1.09002 * 112.85017 * 314.66684 * 16 15 14 35 35 H 1.08992 * 113.61675 * 254.61398 * 17 16 15 36 36 H 1.09000 * 113.60973 * 25.51686 * 17 16 15 37 37 H 1.09005 * 113.62125 * 220.02158 * 18 17 16 38 38 H 1.08996 * 113.68970 * 89.12734 * 18 17 16 39 39 H 1.08999 * 113.61567 * 334.48261 * 19 16 15 40 40 H 1.09000 * 113.61379 * 105.30384 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0574 -1.3184 5 6 2.1803 3.4856 -1.3187 6 6 1.8224 4.1609 -2.6174 7 1 1.2601 3.6250 -3.3677 8 6 2.2128 5.4631 -2.8478 9 7 1.9000 6.0527 -3.9810 10 14 3.1848 6.3903 -1.5497 11 1 4.6374 6.1774 -1.7730 12 1 2.8769 7.8401 -1.6425 13 1 2.8126 5.8905 -0.2018 14 6 1.9954 -0.7659 1.1377 15 6 1.6314 -2.2425 0.9705 16 6 2.1802 -3.0403 2.1551 17 6 1.2410 -3.0600 3.3727 18 6 1.6321 -4.5397 3.5480 19 6 1.9407 -4.5551 2.0416 20 1 -0.3633 0.4514 0.9233 21 1 -0.3632 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0707 23 1 1.5611 1.9275 0.8308 24 1 3.0798 1.3444 0.1083 25 1 2.0659 1.5014 -2.1492 26 1 0.5473 2.0844 -1.4266 27 1 1.7463 4.0417 -0.4878 28 1 3.2645 3.4582 -1.2106 29 1 2.1743 6.9689 -4.1429 30 1 1.5610 -0.3871 2.0628 31 1 3.0797 -0.6610 1.1757 32 1 2.0658 -2.6213 0.0454 33 1 0.5472 -2.3474 0.9325 34 1 3.2092 -2.7782 2.4016 35 1 1.5721 -2.4196 4.1900 36 1 0.1916 -2.9132 3.1169 37 1 0.7973 -5.1817 3.8293 38 1 2.5109 -4.6890 4.1753 39 1 1.0823 -4.8162 1.4227 40 1 2.8361 -5.1206 1.7837 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688648991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:02 Heat of formation + Delta-G solvation = -2.313614 kcal Electronic energy + Delta-G solvation = -15303.777854 eV Core-core repulsion = 12925.252894 eV Total energy + Delta-G solvation = -2378.524959 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.26649 -37.46459 -33.86515 -32.02004 -30.50876 -27.35065 -26.38151 -25.79434 -23.97897 -21.83825 -20.58963 -19.86541 -19.58341 -16.65898 -15.89465 -15.67837 -15.37401 -14.43672 -14.22043 -14.16578 -13.84149 -13.14501 -12.66960 -12.64524 -12.59744 -12.14533 -11.93225 -11.58060 -11.48872 -11.25751 -10.97182 -10.82167 -10.76552 -10.65931 -10.33887 -10.24444 -9.86276 -9.62405 -9.48596 -9.12481 -8.49935 -8.07031 -6.00407 -3.97836 3.33182 3.40123 3.44223 4.09553 4.41909 4.44684 4.48607 4.58213 4.66070 5.03486 5.30247 5.33620 5.35470 5.45438 5.48551 5.52621 5.55306 5.60399 5.66331 5.71929 5.74600 5.82156 5.86290 5.98604 6.07008 6.15853 6.22574 6.26110 6.35278 6.60350 6.63417 6.96951 7.31690 7.33000 7.42870 7.52315 7.84769 8.59473 9.05457 9.62416 11.13258 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.064598 B = 0.003904 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.345260 B = 7170.557003 C = 7370.861082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.543 5.543 3 C 0.053 3.947 4 C -0.098 4.098 5 C -0.014 4.014 6 C -0.518 4.518 7 H 0.072 0.928 8 C 0.064 3.936 9 N -0.905 5.905 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.266 1.266 14 C 0.056 3.944 15 C -0.106 4.106 16 C -0.109 4.109 17 C -0.139 4.139 18 C -0.144 4.144 19 C -0.137 4.137 20 H 0.020 0.980 21 H 0.075 0.925 22 H 0.062 0.938 23 H 0.027 0.973 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.013 0.987 28 H 0.011 0.989 29 H 0.262 0.738 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.598 -18.872 14.719 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.267 5.267 3 C -0.074 4.074 4 C -0.136 4.136 5 C -0.051 4.051 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.545 5.545 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.191 1.191 14 C -0.072 4.072 15 C -0.143 4.143 16 C -0.128 4.128 17 C -0.176 4.176 18 C -0.182 4.182 19 C -0.174 4.174 20 H 0.038 0.962 21 H 0.094 0.906 22 H 0.081 0.919 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.425 -18.926 14.191 23.659 hybrid contribution 0.254 1.066 1.341 1.732 sum -0.172 -17.860 15.532 23.670 Atomic orbital electron populations 1.22451 0.87938 1.01503 1.00815 1.62048 1.07745 1.14772 1.42132 1.22323 0.99452 0.86731 0.98905 1.21479 1.00507 0.96813 0.94754 1.19554 0.95689 0.92290 0.97607 1.21162 1.35443 0.97828 1.01127 0.91026 1.25046 0.95739 0.97543 0.95291 1.69919 1.47174 1.13263 1.24124 0.86765 0.80663 0.78871 0.82892 1.20298 1.21450 1.19101 1.22108 0.99933 0.93577 0.91627 1.21580 1.00737 0.94077 0.97933 1.22538 0.99590 0.95166 0.95534 1.23029 0.99772 0.96495 0.98296 1.22858 1.01286 0.97111 0.96904 1.22927 1.01713 0.96358 0.96452 0.96178 0.90631 0.91881 0.95512 0.91390 0.92027 0.92829 0.96918 0.97109 0.92801 0.95367 0.91184 0.91032 0.91924 0.89370 0.91784 0.90240 0.91744 0.90414 0.90161 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.13 60.06 0.55 0.84 16 2 N -0.54 -8.19 4.76 -242.91 -1.16 -9.34 16 3 C 0.05 0.91 4.96 -3.82 -0.02 0.90 16 4 C -0.10 -2.02 5.08 -26.73 -0.14 -2.15 16 5 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 6 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 7 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 8 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 9 N -0.91 -28.49 13.96 55.43 0.77 -27.72 16 10 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 14 C 0.06 0.69 4.95 -3.83 -0.02 0.67 16 15 C -0.11 -1.10 4.96 -26.73 -0.13 -1.23 16 16 C -0.11 -0.97 3.64 -89.80 -0.33 -1.29 16 17 C -0.14 -1.14 7.65 -25.77 -0.20 -1.34 16 18 C -0.14 -1.07 8.09 -25.78 -0.21 -1.27 16 19 C -0.14 -1.08 7.64 -25.92 -0.20 -1.28 16 20 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 21 H 0.08 1.12 6.30 -51.93 -0.33 0.80 16 22 H 0.06 0.75 6.47 -51.93 -0.34 0.41 16 23 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 24 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 25 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 26 H 0.05 1.11 6.47 -51.93 -0.34 0.77 16 27 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 28 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.65 6.29 -51.93 -0.33 0.32 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 312.07 15.07 4.70 4.70 Total: -1.00 -30.63 312.07 -9.14 -39.77 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -7.56 Total: -4.62 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -1.23 Total: -20.29 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.38 Total: -37.06 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.63 -9.14 -39.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688648991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.458 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds