Wall clock time and date at job start Mon Mar 30 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 111.00065 * 2 1 4 4 C 1.53003 * 109.46656 * 293.95099 * 3 2 1 5 5 C 1.53003 * 109.46845 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46775 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00300 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99870 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00334 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99748 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47015 * 90.00082 * 10 8 6 12 12 H 1.48502 * 109.47027 * 210.00076 * 10 8 6 13 13 H 1.48496 * 109.47148 * 329.99962 * 10 8 6 14 14 C 1.46900 * 110.99824 * 123.94887 * 2 1 3 15 15 C 1.52998 * 109.47088 * 66.04718 * 14 2 1 16 16 C 1.53003 * 109.46991 * 179.97438 * 15 14 2 17 17 C 1.53786 * 113.61503 * 85.86302 * 16 15 14 18 18 C 1.54049 * 86.98426 * 140.01654 * 17 16 15 19 19 C 1.53781 * 113.61337 * 183.47096 * 16 15 14 20 20 H 1.09007 * 109.47085 * 296.05217 * 1 2 3 21 21 H 1.09004 * 109.46535 * 56.04833 * 1 2 3 22 22 H 1.08994 * 109.47197 * 176.05309 * 1 2 3 23 23 H 1.08995 * 109.47579 * 53.94676 * 3 2 1 24 24 H 1.09002 * 109.47253 * 173.95047 * 3 2 1 25 25 H 1.08997 * 109.47260 * 299.99872 * 4 3 2 26 26 H 1.08992 * 109.47327 * 60.00162 * 4 3 2 27 27 H 1.08997 * 109.46820 * 299.99815 * 5 4 3 28 28 H 1.08992 * 109.47293 * 59.99814 * 5 4 3 29 29 H 0.97000 * 120.00310 * 179.97438 * 9 8 6 30 30 H 1.09000 * 109.47156 * 306.04688 * 14 2 1 31 31 H 1.09006 * 109.47009 * 186.04729 * 14 2 1 32 32 H 1.09000 * 109.47147 * 59.99964 * 15 14 2 33 33 H 1.08997 * 109.47118 * 299.99785 * 15 14 2 34 34 H 1.09002 * 112.85017 * 314.66684 * 16 15 14 35 35 H 1.08992 * 113.61675 * 254.61398 * 17 16 15 36 36 H 1.09000 * 113.60973 * 25.51686 * 17 16 15 37 37 H 1.09005 * 113.62125 * 220.02158 * 18 17 16 38 38 H 1.08996 * 113.68970 * 89.12734 * 18 17 16 39 39 H 1.08999 * 113.61567 * 334.48261 * 19 16 15 40 40 H 1.09000 * 113.61379 * 105.30384 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0574 -1.3184 5 6 2.1803 3.4856 -1.3187 6 6 1.8224 4.1609 -2.6174 7 1 1.2601 3.6250 -3.3677 8 6 2.2128 5.4631 -2.8478 9 7 1.9000 6.0527 -3.9810 10 14 3.1848 6.3903 -1.5497 11 1 4.6374 6.1774 -1.7730 12 1 2.8769 7.8401 -1.6425 13 1 2.8126 5.8905 -0.2018 14 6 1.9954 -0.7659 1.1377 15 6 1.6314 -2.2425 0.9705 16 6 2.1802 -3.0403 2.1551 17 6 1.2410 -3.0600 3.3727 18 6 1.6321 -4.5397 3.5480 19 6 1.9407 -4.5551 2.0416 20 1 -0.3633 0.4514 0.9233 21 1 -0.3632 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0707 23 1 1.5611 1.9275 0.8308 24 1 3.0798 1.3444 0.1083 25 1 2.0659 1.5014 -2.1492 26 1 0.5473 2.0844 -1.4266 27 1 1.7463 4.0417 -0.4878 28 1 3.2645 3.4582 -1.2106 29 1 2.1743 6.9689 -4.1429 30 1 1.5610 -0.3871 2.0628 31 1 3.0797 -0.6610 1.1757 32 1 2.0658 -2.6213 0.0454 33 1 0.5472 -2.3474 0.9325 34 1 3.2092 -2.7782 2.4016 35 1 1.5721 -2.4196 4.1900 36 1 0.1916 -2.9132 3.1169 37 1 0.7973 -5.1817 3.8293 38 1 2.5109 -4.6890 4.1753 39 1 1.0823 -4.8162 1.4227 40 1 2.8361 -5.1206 1.7837 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688648991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:02 Heat of formation + Delta-G solvation = -20.253942 kcal Electronic energy + Delta-G solvation = -15304.555805 eV Core-core repulsion = 12925.252894 eV Total energy + Delta-G solvation = -2379.302910 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.00285 -38.60933 -35.73412 -33.84353 -31.77120 -28.94262 -27.54239 -26.44265 -25.25407 -23.22830 -21.69939 -21.52136 -20.23137 -18.87793 -16.85869 -16.72203 -16.41923 -16.12831 -15.57919 -15.26453 -15.01467 -14.66033 -14.35015 -13.71766 -13.45775 -13.27887 -13.23694 -12.96822 -12.71946 -12.53922 -12.45097 -12.16191 -11.78010 -11.69047 -11.59484 -11.39607 -11.35929 -11.29593 -10.96629 -10.81061 -10.76020 -9.23877 -8.29572 -6.34010 1.35821 1.37922 1.50202 2.36504 2.98935 3.05522 3.74263 3.79051 3.90863 4.02965 4.09256 4.19504 4.26220 4.45455 4.58489 4.63838 4.64973 4.68952 4.71327 4.86568 4.90794 4.91871 4.93769 4.97363 5.01233 5.08727 5.10981 5.15433 5.20716 5.33622 5.48927 5.53116 5.60321 5.66312 5.68262 6.12827 6.23372 6.30596 6.74262 7.30562 8.87592 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.064598 B = 0.003904 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.345260 B = 7170.557003 C = 7370.861082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.555 5.555 3 C 0.064 3.936 4 C -0.089 4.089 5 C -0.010 4.010 6 C -0.534 4.534 7 H 0.028 0.972 8 C 0.001 3.999 9 N -0.954 5.954 10 Si 0.955 3.045 11 H -0.265 1.265 12 H -0.283 1.283 13 H -0.246 1.246 14 C 0.057 3.943 15 C -0.098 4.098 16 C -0.110 4.110 17 C -0.140 4.140 18 C -0.140 4.140 19 C -0.137 4.137 20 H 0.026 0.974 21 H 0.058 0.942 22 H 0.082 0.918 23 H 0.031 0.969 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.267 0.733 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 -19.653 17.205 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.279 5.279 3 C -0.064 4.064 4 C -0.127 4.127 5 C -0.047 4.047 6 C -0.572 4.572 7 H 0.047 0.953 8 C -0.195 4.195 9 N -0.594 5.594 10 Si 0.778 3.222 11 H -0.190 1.190 12 H -0.209 1.209 13 H -0.170 1.170 14 C -0.070 4.070 15 C -0.135 4.135 16 C -0.129 4.129 17 C -0.177 4.177 18 C -0.177 4.177 19 C -0.174 4.174 20 H 0.044 0.956 21 H 0.077 0.923 22 H 0.100 0.900 23 H 0.049 0.951 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.392 -19.737 16.687 25.848 hybrid contribution -0.067 1.254 0.473 1.342 sum 0.324 -18.483 17.159 25.222 Atomic orbital electron populations 1.22456 0.87287 1.02527 1.00338 1.62004 1.08485 1.13593 1.43846 1.22084 0.99982 0.87834 0.96482 1.21301 0.99771 0.94975 0.96625 1.19491 0.96274 0.94043 0.94938 1.21518 1.35017 0.98304 1.02386 0.95319 1.26085 0.96961 0.98638 0.97855 1.70078 1.48785 1.13956 1.26615 0.85587 0.79172 0.77213 0.80232 1.18982 1.20883 1.16956 1.22165 0.99952 0.94217 0.90681 1.21508 1.00802 0.92914 0.98311 1.22538 0.99721 0.95568 0.95093 1.23040 0.99530 0.97191 0.97955 1.22856 1.01771 0.96553 0.96559 1.22935 1.01939 0.95593 0.96960 0.95559 0.92332 0.89964 0.95081 0.90674 0.93439 0.93510 0.96307 0.96198 0.92462 0.94902 0.91014 0.91919 0.91783 0.89246 0.91704 0.90357 0.91119 0.89781 0.90143 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.13 127.69 1.17 1.74 16 2 N -0.56 -15.88 4.76 -922.43 -4.39 -20.27 16 3 C 0.06 2.09 4.96 86.30 0.43 2.52 16 4 C -0.09 -3.65 5.08 30.60 0.16 -3.50 16 5 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 6 C -0.53 -31.99 9.66 25.60 0.25 -31.75 16 7 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 8 C 0.00 0.06 5.47 84.66 0.46 0.52 16 9 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 10 Si 0.96 45.08 27.47 68.60 1.88 46.96 16 11 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 14 C 0.06 1.30 4.95 86.30 0.43 1.73 16 15 C -0.10 -1.85 4.96 30.59 0.15 -1.70 16 16 C -0.11 -1.72 3.64 -10.26 -0.04 -1.76 16 17 C -0.14 -2.00 7.65 31.21 0.24 -1.77 16 18 C -0.14 -1.75 8.09 31.21 0.25 -1.50 16 19 C -0.14 -1.88 7.64 31.12 0.24 -1.65 16 20 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 21 H 0.06 1.72 6.30 -2.39 -0.02 1.71 16 22 H 0.08 1.81 6.47 -2.39 -0.02 1.80 16 23 H 0.03 0.99 8.12 -2.39 -0.02 0.97 16 24 H 0.07 2.35 7.93 -2.39 -0.02 2.33 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.05 1.96 6.47 -2.39 -0.02 1.94 16 27 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 28 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 29 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 30 H 0.03 0.73 8.12 -2.39 -0.02 0.71 16 31 H 0.07 1.61 7.93 -2.38 -0.02 1.59 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.19 6.29 -2.39 -0.02 1.18 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.14 7.92 -2.39 -0.02 1.12 16 37 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.10 8.10 -2.39 -0.02 1.09 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -65.96 312.07 2.55 -63.41 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.90 Total: 8.34 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 3.85 Total: -37.44 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -4.09 Total: -81.28 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -65.96 2.55 -63.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688648991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.157 kcal (2) G-P(sol) polarization free energy of solvation -65.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds