Wall clock time and date at job start Mon Mar 30 2020 03:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.52998 * 109.47073 * 66.04769 * 3 2 1 5 5 C 1.50704 * 109.47399 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99524 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00207 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00274 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00169 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47637 * 89.99537 * 9 7 5 11 11 H 1.48498 * 109.47189 * 210.00329 * 9 7 5 12 12 H 1.48507 * 109.46870 * 329.99720 * 9 7 5 13 13 C 1.46901 * 110.99975 * 236.05051 * 2 1 3 14 14 C 1.53000 * 109.46769 * 293.94862 * 13 2 1 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 2 16 16 C 1.52992 * 109.47482 * 180.02562 * 15 14 13 17 17 C 1.53778 * 113.61727 * 274.13766 * 16 15 14 18 18 C 1.53956 * 87.02468 * 220.04570 * 17 16 15 19 19 C 1.53784 * 113.61658 * 176.52792 * 16 15 14 20 20 H 1.08999 * 109.46894 * 183.95297 * 1 2 3 21 21 H 1.09005 * 109.47342 * 303.95215 * 1 2 3 22 22 H 1.09001 * 109.47121 * 63.95310 * 1 2 3 23 23 H 1.09005 * 109.47192 * 186.04416 * 3 2 1 24 24 H 1.08993 * 109.47271 * 306.04735 * 3 2 1 25 25 H 1.09002 * 109.47148 * 300.00269 * 4 3 2 26 26 H 1.09003 * 109.47179 * 59.99914 * 4 3 2 27 27 H 0.96992 * 120.00232 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.46874 * 173.95142 * 13 2 1 29 29 H 1.08992 * 109.47407 * 53.95160 * 13 2 1 30 30 H 1.09002 * 109.47398 * 300.00295 * 14 13 2 31 31 H 1.09001 * 109.47194 * 60.00475 * 14 13 2 32 32 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 33 33 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 34 34 H 1.09000 * 112.84915 * 45.33452 * 16 15 14 35 35 H 1.08996 * 113.61184 * 334.56845 * 17 16 15 36 36 H 1.09000 * 113.61578 * 105.46835 * 17 16 15 37 37 H 1.09002 * 113.53647 * 270.81670 * 18 17 16 38 38 H 1.08996 * 113.66740 * 139.92974 * 18 17 16 39 39 H 1.08998 * 113.61407 * 254.52625 * 19 16 15 40 40 H 1.08996 * 113.61156 * 25.35491 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1720 3.4642 1.3186 6 1 2.7199 3.8323 0.4638 7 6 1.9661 4.2816 2.4096 8 7 2.4382 5.5091 2.4101 9 14 1.0177 3.6452 3.8878 10 1 1.9605 3.0180 4.8484 11 1 0.3155 4.7743 4.5490 12 1 0.0228 2.6372 3.4410 13 6 1.9954 -0.7659 -1.1377 14 6 1.6315 -2.2425 -0.9704 15 6 2.1803 -3.0404 -2.1549 16 6 1.8159 -4.5169 -1.9880 17 6 2.8204 -5.3065 -1.1323 18 6 2.6455 -6.4609 -2.1357 19 6 2.2500 -5.3963 -3.1726 20 1 -0.3633 -1.0252 0.0708 21 1 -0.3634 0.5740 0.8525 22 1 -0.3633 0.4513 -0.9233 23 1 3.0797 1.3445 -0.1082 24 1 1.5611 1.9274 -0.8308 25 1 0.5471 2.0844 1.4266 26 1 2.0658 1.5015 2.1492 27 1 2.2930 6.0843 3.1775 28 1 3.0797 -0.6609 -1.1757 29 1 1.5611 -0.3872 -2.0628 30 1 2.0659 -2.6213 -0.0452 31 1 0.5472 -2.3475 -0.9324 32 1 1.7463 -2.6618 -3.0803 33 1 3.2646 -2.9355 -2.1926 34 1 0.7777 -4.6657 -1.6912 35 1 3.8229 -4.8785 -1.1296 36 1 2.4550 -5.5373 -0.1317 37 1 1.8344 -7.1422 -1.8783 38 1 3.5748 -6.9783 -2.3738 39 1 1.4246 -5.6996 -3.8167 40 1 3.0953 -4.9922 -3.7296 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688653025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:23 Heat of formation + Delta-G solvation = -2.805920 kcal Electronic energy + Delta-G solvation = -15309.910952 eV Core-core repulsion = 12931.364645 eV Total energy + Delta-G solvation = -2378.546307 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.17851 -37.43268 -33.71376 -32.49923 -30.05913 -27.49530 -26.17558 -25.77229 -23.89790 -21.98330 -20.58122 -19.80699 -19.49555 -16.84125 -15.90051 -15.37037 -15.20012 -14.65866 -14.32421 -13.94771 -13.64874 -13.09435 -12.63664 -12.60237 -12.50123 -12.42394 -11.75655 -11.57348 -11.32822 -11.22312 -11.15905 -10.88580 -10.70919 -10.48300 -10.30159 -10.20382 -10.05119 -9.71170 -9.55763 -9.16628 -8.50037 -7.78761 -6.01812 -3.99687 3.35007 3.41522 3.46754 4.29010 4.45277 4.48827 4.51248 4.59982 4.69303 5.07898 5.18342 5.32731 5.37586 5.45700 5.53087 5.56318 5.63415 5.67805 5.69123 5.79192 5.83486 5.85079 5.90782 5.95833 6.12959 6.20369 6.25021 6.32552 6.36189 6.45552 6.47309 6.81703 7.20436 7.36833 7.64395 7.69639 7.89226 8.56261 9.02415 9.60910 11.11666 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.058018 B = 0.003993 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.493453 B = 7011.253856 C = 7133.866518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.547 5.547 3 C 0.070 3.930 4 C -0.008 4.008 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.066 3.934 8 N -0.905 5.905 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.054 3.946 14 C -0.113 4.113 15 C -0.109 4.109 16 C -0.109 4.109 17 C -0.137 4.137 18 C -0.145 4.145 19 C -0.140 4.140 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.018 0.982 23 H 0.065 0.935 24 H 0.025 0.975 25 H 0.016 0.984 26 H 0.020 0.980 27 H 0.263 0.737 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 -21.297 -9.043 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.271 5.271 3 C -0.057 4.057 4 C -0.045 4.045 5 C -0.559 4.559 6 H 0.088 0.912 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.074 4.074 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.127 4.127 17 C -0.175 4.175 18 C -0.182 4.182 19 C -0.177 4.177 20 H 0.077 0.923 21 H 0.091 0.909 22 H 0.037 0.963 23 H 0.084 0.916 24 H 0.043 0.957 25 H 0.034 0.966 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.872 -21.351 -8.506 23.059 hybrid contribution -0.736 0.276 0.064 0.789 sum -2.609 -21.075 -8.442 22.852 Atomic orbital electron populations 1.22415 0.88401 1.00979 1.00723 1.62095 1.07442 1.15835 1.41733 1.22131 0.99007 0.85203 0.99327 1.19579 0.96519 0.95544 0.92907 1.21106 1.35418 0.95616 1.03788 0.91170 1.25003 0.95337 0.94685 0.98419 1.69917 1.46372 1.07223 1.30921 0.86734 0.80771 0.78507 0.83009 1.20221 1.21517 1.18994 1.22115 1.00010 0.93466 0.91807 1.21579 1.00759 0.94264 0.98532 1.21545 1.00895 0.93744 0.98474 1.22540 0.99370 0.94126 0.96658 1.23003 0.99772 0.96702 0.97987 1.22848 1.01370 0.96544 0.97457 1.22952 1.01146 0.97157 0.96438 0.92253 0.90884 0.96306 0.91634 0.95697 0.96598 0.96183 0.92756 0.91215 0.95624 0.91230 0.92246 0.92200 0.91889 0.89493 0.90074 0.91626 0.90475 0.91736 0.91849 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.13 60.07 0.55 0.93 16 2 N -0.55 -9.81 4.76 -242.92 -1.16 -10.97 16 3 C 0.07 1.48 4.90 -3.82 -0.02 1.46 16 4 C -0.01 -0.19 3.97 -27.88 -0.11 -0.30 16 5 C -0.52 -15.21 9.66 -34.44 -0.33 -15.55 16 6 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.91 -28.38 13.96 55.43 0.77 -27.60 16 9 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 13 C 0.05 0.79 4.96 -3.82 -0.02 0.77 16 14 C -0.11 -1.36 5.14 -26.73 -0.14 -1.50 16 15 C -0.11 -1.08 5.04 -26.74 -0.13 -1.21 16 16 C -0.11 -0.96 3.64 -89.81 -0.33 -1.29 16 17 C -0.14 -1.18 7.65 -25.83 -0.20 -1.38 16 18 C -0.14 -1.10 8.09 -25.82 -0.21 -1.31 16 19 C -0.14 -1.11 7.65 -25.91 -0.20 -1.30 16 20 H 0.06 0.83 6.47 -51.93 -0.34 0.49 16 21 H 0.07 1.30 6.30 -51.93 -0.33 0.97 16 22 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 24 H 0.02 0.53 8.12 -51.93 -0.42 0.11 16 25 H 0.02 0.39 5.53 -51.93 -0.29 0.11 16 26 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 27 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 28 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 29 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.71 6.55 -51.93 -0.34 0.37 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.62 7.88 -51.93 -0.41 0.21 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -30.56 312.06 -9.14 -39.70 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -7.56 Total: -4.62 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -1.23 Total: -18.80 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.38 Total: -38.58 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.56 -9.14 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688653025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.892 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds