Wall clock time and date at job start Mon Mar 30 2020 03:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.52998 * 109.47073 * 66.04769 * 3 2 1 5 5 C 1.50704 * 109.47399 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99524 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00207 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00274 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00169 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47637 * 89.99537 * 9 7 5 11 11 H 1.48498 * 109.47189 * 210.00329 * 9 7 5 12 12 H 1.48507 * 109.46870 * 329.99720 * 9 7 5 13 13 C 1.46901 * 110.99975 * 236.05051 * 2 1 3 14 14 C 1.53000 * 109.46769 * 293.94862 * 13 2 1 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 2 16 16 C 1.52992 * 109.47482 * 180.02562 * 15 14 13 17 17 C 1.53778 * 113.61727 * 274.13766 * 16 15 14 18 18 C 1.53956 * 87.02468 * 220.04570 * 17 16 15 19 19 C 1.53784 * 113.61658 * 176.52792 * 16 15 14 20 20 H 1.08999 * 109.46894 * 183.95297 * 1 2 3 21 21 H 1.09005 * 109.47342 * 303.95215 * 1 2 3 22 22 H 1.09001 * 109.47121 * 63.95310 * 1 2 3 23 23 H 1.09005 * 109.47192 * 186.04416 * 3 2 1 24 24 H 1.08993 * 109.47271 * 306.04735 * 3 2 1 25 25 H 1.09002 * 109.47148 * 300.00269 * 4 3 2 26 26 H 1.09003 * 109.47179 * 59.99914 * 4 3 2 27 27 H 0.96992 * 120.00232 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.46874 * 173.95142 * 13 2 1 29 29 H 1.08992 * 109.47407 * 53.95160 * 13 2 1 30 30 H 1.09002 * 109.47398 * 300.00295 * 14 13 2 31 31 H 1.09001 * 109.47194 * 60.00475 * 14 13 2 32 32 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 33 33 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 34 34 H 1.09000 * 112.84915 * 45.33452 * 16 15 14 35 35 H 1.08996 * 113.61184 * 334.56845 * 17 16 15 36 36 H 1.09000 * 113.61578 * 105.46835 * 17 16 15 37 37 H 1.09002 * 113.53647 * 270.81670 * 18 17 16 38 38 H 1.08996 * 113.66740 * 139.92974 * 18 17 16 39 39 H 1.08998 * 113.61407 * 254.52625 * 19 16 15 40 40 H 1.08996 * 113.61156 * 25.35491 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1720 3.4642 1.3186 6 1 2.7199 3.8323 0.4638 7 6 1.9661 4.2816 2.4096 8 7 2.4382 5.5091 2.4101 9 14 1.0177 3.6452 3.8878 10 1 1.9605 3.0180 4.8484 11 1 0.3155 4.7743 4.5490 12 1 0.0228 2.6372 3.4410 13 6 1.9954 -0.7659 -1.1377 14 6 1.6315 -2.2425 -0.9704 15 6 2.1803 -3.0404 -2.1549 16 6 1.8159 -4.5169 -1.9880 17 6 2.8204 -5.3065 -1.1323 18 6 2.6455 -6.4609 -2.1357 19 6 2.2500 -5.3963 -3.1726 20 1 -0.3633 -1.0252 0.0708 21 1 -0.3634 0.5740 0.8525 22 1 -0.3633 0.4513 -0.9233 23 1 3.0797 1.3445 -0.1082 24 1 1.5611 1.9274 -0.8308 25 1 0.5471 2.0844 1.4266 26 1 2.0658 1.5015 2.1492 27 1 2.2930 6.0843 3.1775 28 1 3.0797 -0.6609 -1.1757 29 1 1.5611 -0.3872 -2.0628 30 1 2.0659 -2.6213 -0.0452 31 1 0.5472 -2.3475 -0.9324 32 1 1.7463 -2.6618 -3.0803 33 1 3.2646 -2.9355 -2.1926 34 1 0.7777 -4.6657 -1.6912 35 1 3.8229 -4.8785 -1.1296 36 1 2.4550 -5.5373 -0.1317 37 1 1.8344 -7.1422 -1.8783 38 1 3.5748 -6.9783 -2.3738 39 1 1.4246 -5.6996 -3.8167 40 1 3.0953 -4.9922 -3.7296 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688653025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:23 Heat of formation + Delta-G solvation = -20.618911 kcal Electronic energy + Delta-G solvation = -15310.683382 eV Core-core repulsion = 12931.364645 eV Total energy + Delta-G solvation = -2379.318737 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89546 -38.78502 -35.41299 -34.10682 -31.85849 -28.58026 -27.73369 -26.43449 -25.33874 -23.15852 -21.70100 -21.51127 -20.16618 -19.02234 -16.78285 -16.66781 -16.29444 -16.14184 -15.70398 -15.30745 -15.03352 -14.52628 -14.45706 -13.58652 -13.47023 -13.29568 -13.25940 -12.89544 -12.71516 -12.62264 -12.31997 -12.03963 -11.92545 -11.80214 -11.63825 -11.40617 -11.35656 -11.31114 -10.92368 -10.78052 -10.75555 -9.21774 -8.30981 -6.35439 1.36631 1.37700 1.50661 2.36074 3.04326 3.05041 3.75199 3.81747 3.87069 4.03731 4.10382 4.25951 4.27903 4.43579 4.49458 4.60658 4.67495 4.74886 4.78987 4.83429 4.91579 4.93629 4.95561 4.98959 5.02255 5.11039 5.13539 5.16540 5.27714 5.35444 5.45979 5.47557 5.52977 5.61613 5.70654 6.12996 6.25777 6.31829 6.72231 7.29450 8.85848 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.058018 B = 0.003993 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.493453 B = 7011.253856 C = 7133.866518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.555 5.555 3 C 0.081 3.919 4 C 0.000 4.000 5 C -0.535 4.535 6 H 0.031 0.969 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.248 1.248 13 C 0.054 3.946 14 C -0.103 4.103 15 C -0.103 4.103 16 C -0.110 4.110 17 C -0.142 4.142 18 C -0.141 4.141 19 C -0.138 4.138 20 H 0.087 0.913 21 H 0.057 0.943 22 H 0.023 0.977 23 H 0.059 0.941 24 H 0.016 0.984 25 H 0.021 0.979 26 H 0.019 0.981 27 H 0.267 0.733 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 -23.593 -8.807 25.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.279 5.279 3 C -0.047 4.047 4 C -0.038 4.038 5 C -0.574 4.574 6 H 0.050 0.950 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.172 1.172 13 C -0.074 4.074 14 C -0.141 4.141 15 C -0.141 4.141 16 C -0.128 4.128 17 C -0.179 4.179 18 C -0.179 4.179 19 C -0.175 4.175 20 H 0.105 0.895 21 H 0.076 0.924 22 H 0.041 0.959 23 H 0.078 0.922 24 H 0.034 0.966 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.001 -23.670 -8.290 25.259 hybrid contribution -0.333 1.018 -0.091 1.075 sum -3.334 -22.652 -8.381 24.381 Atomic orbital electron populations 1.22458 0.87266 1.02560 1.00238 1.62051 1.08560 1.13649 1.43624 1.21834 0.98753 0.87060 0.97027 1.19448 0.96334 0.93154 0.94854 1.21432 1.35180 0.98020 1.02718 0.95042 1.25996 0.96416 0.94752 1.01947 1.70063 1.48012 1.08808 1.32279 0.85601 0.79628 0.78405 0.78655 1.19161 1.20750 1.17173 1.22213 0.99823 0.94624 0.90748 1.21489 1.01072 0.92391 0.99126 1.21490 1.00764 0.94208 0.97620 1.22541 0.99492 0.93381 0.97395 1.23029 0.99521 0.97262 0.98121 1.22852 1.01882 0.96356 0.96796 1.22949 1.01388 0.96877 0.96280 0.89458 0.92420 0.95875 0.92241 0.96556 0.96114 0.96245 0.92383 0.91479 0.95194 0.91931 0.91710 0.91842 0.91967 0.89338 0.90416 0.91852 0.89848 0.91213 0.91221 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.13 127.69 1.17 1.86 16 2 N -0.55 -19.07 4.76 -922.45 -4.39 -23.47 16 3 C 0.08 3.40 4.90 86.30 0.42 3.83 16 4 C 0.00 -0.01 3.97 29.85 0.12 0.11 16 5 C -0.54 -31.91 9.66 25.60 0.25 -31.66 16 6 H 0.03 2.05 7.99 -2.91 -0.02 2.02 16 7 C 0.01 0.34 5.47 84.65 0.46 0.81 16 8 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 9 Si 0.95 45.49 27.47 68.60 1.88 47.37 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 13 C 0.05 1.48 4.96 86.30 0.43 1.90 16 14 C -0.10 -2.24 5.14 30.59 0.16 -2.09 16 15 C -0.10 -1.83 5.04 30.59 0.15 -1.67 16 16 C -0.11 -1.71 3.64 -10.27 -0.04 -1.75 16 17 C -0.14 -2.19 7.65 31.18 0.24 -1.96 16 18 C -0.14 -1.86 8.09 31.18 0.25 -1.61 16 19 C -0.14 -1.88 7.65 31.12 0.24 -1.64 16 20 H 0.09 2.17 6.47 -2.39 -0.02 2.15 16 21 H 0.06 1.93 6.30 -2.38 -0.02 1.92 16 22 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.06 2.53 7.93 -2.38 -0.02 2.51 16 24 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 25 H 0.02 1.00 5.53 -2.39 -0.01 0.99 16 26 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 27 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 28 H 0.07 1.88 7.93 -2.39 -0.02 1.86 16 29 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.35 6.55 -2.39 -0.02 1.33 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.12 7.88 -2.39 -0.02 1.10 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.25 7.92 -2.39 -0.02 1.23 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 Total: -1.00 -65.41 312.06 2.54 -62.87 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.90 Total: 7.55 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 3.85 Total: -33.86 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -4.09 Total: -83.94 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -65.41 2.54 -62.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688653025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.254 kcal (2) G-P(sol) polarization free energy of solvation -65.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds