Wall clock time and date at job start Mon Mar 30 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47474 * 2 1 4 4 C 1.53001 * 109.47168 * 239.99700 * 2 1 3 5 5 C 1.52994 * 109.47154 * 178.25038 * 4 2 1 6 6 C 1.53000 * 109.47137 * 186.11936 * 5 4 2 7 7 C 1.53000 * 117.50273 * 243.61973 * 6 5 4 8 8 C 1.52995 * 60.00159 * 252.51389 * 7 6 5 9 9 N 1.46905 * 109.46831 * 119.99907 * 2 1 3 10 10 C 1.46898 * 110.99812 * 330.43291 * 9 2 1 11 11 C 1.46901 * 110.99956 * 206.47707 * 9 2 1 12 12 H 1.09003 * 109.46702 * 316.63723 * 11 9 2 13 13 C 1.53006 * 109.46781 * 76.63490 * 11 9 2 14 14 C 1.50689 * 109.47318 * 196.63818 * 11 9 2 15 15 H 1.08004 * 120.00015 * 359.97438 * 14 11 9 16 16 C 1.37873 * 120.00252 * 179.72877 * 14 11 9 17 17 N 1.31515 * 120.00333 * 180.27725 * 16 14 11 18 18 Si 1.86799 * 119.99982 * 0.27027 * 16 14 11 19 19 H 1.48500 * 109.47409 * 90.00151 * 18 16 14 20 20 H 1.48497 * 109.47633 * 210.00598 * 18 16 14 21 21 H 1.48501 * 109.46966 * 330.00224 * 18 16 14 22 22 H 1.09003 * 109.47493 * 186.01096 * 1 2 3 23 23 H 1.08998 * 109.47470 * 306.01287 * 1 2 3 24 24 H 1.08999 * 109.46953 * 66.01411 * 1 2 3 25 25 H 1.09000 * 109.47362 * 298.25233 * 4 2 1 26 26 H 1.09000 * 109.47024 * 58.25149 * 4 2 1 27 27 H 1.09004 * 109.47096 * 306.11966 * 5 4 2 28 28 H 1.09005 * 109.47186 * 66.12176 * 5 4 2 29 29 H 1.09002 * 115.54991 * 29.33536 * 6 5 4 30 30 H 1.09004 * 117.49403 * 0.02562 * 7 6 5 31 31 H 1.08992 * 117.49772 * 145.01766 * 7 6 5 32 32 H 1.09003 * 117.49727 * 252.50872 * 8 7 6 33 33 H 1.08996 * 117.50210 * 107.48737 * 8 7 6 34 34 H 1.08999 * 109.46865 * 296.04262 * 10 9 2 35 35 H 1.08998 * 109.47251 * 56.04959 * 10 9 2 36 36 H 1.09004 * 109.46752 * 176.04924 * 10 9 2 37 37 H 1.08991 * 109.46675 * 66.54157 * 13 11 9 38 38 H 1.08997 * 109.46625 * 186.53730 * 13 11 9 39 39 H 1.08999 * 109.47254 * 306.53823 * 13 11 9 40 40 H 0.97001 * 120.00063 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5693 -0.6833 -1.2714 6 6 4.0749 -1.2681 -2.5918 7 6 4.9120 -2.5469 -2.5235 8 6 5.5804 -1.2121 -2.8587 9 7 2.0196 -0.6925 1.1995 10 6 1.0704 -0.5534 2.3120 11 6 3.3525 -0.2066 1.5807 12 1 3.9722 -0.1089 0.6893 13 6 3.2223 1.1566 2.2634 14 6 3.9911 -1.1857 2.5316 15 1 3.4598 -2.0794 2.8240 16 6 5.2557 -0.9432 3.0245 17 7 5.8152 -1.8004 3.8502 18 14 6.1743 0.6029 2.5195 19 1 5.8626 1.6978 3.4731 20 1 7.6353 0.3370 2.5316 21 1 5.7555 1.0032 1.1522 22 1 -0.3634 -1.0220 0.1076 23 1 -0.3634 0.6042 0.8312 24 1 -0.3633 0.4178 -0.9389 25 1 1.7025 -1.7576 -1.2337 26 1 1.6513 -0.2259 -2.1389 27 1 3.9085 0.3484 -1.1774 28 1 3.9595 -1.2712 -0.4406 29 1 3.4076 -1.1479 -3.4453 30 1 5.1022 -2.9719 -1.5379 31 1 4.7954 -3.2685 -3.3320 32 1 5.9036 -1.0555 -3.8878 33 1 6.2106 -0.7587 -2.0937 34 1 0.9922 0.4967 2.5936 35 1 0.0918 -0.9205 2.0027 36 1 1.4230 -1.1331 3.1651 37 1 2.7018 1.0386 3.2137 38 1 4.2150 1.5698 2.4416 39 1 2.6574 1.8321 1.6211 40 1 6.7051 -1.6299 4.1966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691671412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:21 Heat of formation + Delta-G solvation = 32.539608 kcal Electronic energy + Delta-G solvation = -16802.487588 eV Core-core repulsion = 14425.473977 eV Total energy + Delta-G solvation = -2377.013610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.62466 -36.92199 -33.56267 -31.86989 -30.52923 -27.98061 -25.70249 -25.08322 -23.26312 -22.05269 -20.65597 -20.02668 -18.56401 -16.52844 -15.84505 -15.27542 -14.81925 -14.33310 -13.64803 -13.45024 -13.33343 -12.94692 -12.43934 -12.21108 -12.02030 -11.79080 -11.40906 -11.29173 -11.13044 -11.02535 -10.90528 -10.70474 -10.47592 -10.34781 -10.10393 -9.79517 -9.67832 -9.47514 -9.40454 -8.87111 -8.51210 -7.19962 -6.02356 -3.98611 3.27146 3.36537 3.39225 4.12778 4.42421 4.83218 4.95606 5.24507 5.28371 5.30277 5.43684 5.48652 5.71589 5.77919 5.87367 5.90877 5.99900 6.08050 6.18180 6.20620 6.24139 6.28382 6.30907 6.32848 6.42919 6.47202 6.48613 6.56283 6.62091 6.71521 6.85882 6.93354 7.04972 7.25167 7.73966 8.04968 8.18159 8.74066 9.08096 9.60996 11.11176 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.012785 C = 0.008636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.258698 B = 2189.588642 C = 3241.443519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 H 0.038 0.962 4 C -0.095 4.095 5 C -0.100 4.100 6 C -0.147 4.147 7 C -0.180 4.180 8 C -0.189 4.189 9 N -0.516 5.516 10 C 0.029 3.971 11 C 0.163 3.837 12 H 0.058 0.942 13 C -0.185 4.185 14 C -0.493 4.493 15 H 0.080 0.920 16 C 0.069 3.931 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.282 1.282 20 H -0.297 1.297 21 H -0.268 1.268 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.016 0.984 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.026 0.974 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.340 3.683 -10.652 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.039 4.039 3 H 0.055 0.945 4 C -0.133 4.133 5 C -0.137 4.137 6 C -0.165 4.165 7 C -0.217 4.217 8 C -0.226 4.226 9 N -0.240 5.240 10 C -0.120 4.120 11 C 0.056 3.944 12 H 0.076 0.924 13 C -0.244 4.244 14 C -0.532 4.532 15 H 0.098 0.902 16 C -0.132 4.132 17 N -0.541 5.541 18 Si 0.711 3.289 19 H -0.209 1.209 20 H -0.225 1.225 21 H -0.193 1.193 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.144 3.134 -10.659 12.696 hybrid contribution 0.633 1.843 0.082 1.950 sum -5.510 4.977 -10.577 12.923 Atomic orbital electron populations 1.22037 0.95892 1.01974 1.00779 1.21705 0.93746 0.95820 0.92624 0.94451 1.21486 0.95196 1.00949 0.95647 1.21550 0.95912 1.00664 0.95552 1.22409 0.92882 1.01498 0.99748 1.23031 1.04691 0.90795 1.03145 1.22937 0.96014 1.01941 1.01728 1.62251 1.03101 1.55542 1.03064 1.22387 0.95460 0.98823 0.95303 1.20225 0.86996 0.90537 0.96660 0.92442 1.22830 0.99876 1.00448 1.01216 1.20944 1.00256 1.06903 1.25084 0.90158 1.24892 0.97240 0.96143 0.94924 1.69880 1.15723 1.36001 1.32457 0.86978 0.78376 0.84016 0.79511 1.20928 1.22500 1.19349 0.91929 0.92882 0.93190 0.91468 0.93123 0.92638 0.88377 0.88679 0.88138 0.89558 0.89555 0.88887 0.96590 0.92923 0.90971 0.92491 0.94123 0.95469 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 7.84 37.16 0.29 -1.79 16 2 C 0.07 1.18 2.47 -67.71 -0.17 1.02 16 3 H 0.04 0.66 6.49 -51.93 -0.34 0.33 16 4 C -0.09 -1.49 4.88 -26.73 -0.13 -1.62 16 5 C -0.10 -1.72 3.87 -26.73 -0.10 -1.82 16 6 C -0.15 -2.18 5.74 -90.62 -0.52 -2.70 16 7 C -0.18 -2.63 10.18 -26.73 -0.27 -2.90 16 8 C -0.19 -2.71 10.25 -26.73 -0.27 -2.98 16 9 N -0.52 -10.45 4.40 -228.29 -1.01 -11.46 16 10 C 0.03 0.54 7.52 60.06 0.45 0.99 16 11 C 0.16 3.78 1.05 -68.87 -0.07 3.71 16 12 H 0.06 1.35 3.21 -51.93 -0.17 1.19 16 13 C -0.19 -4.08 7.46 37.16 0.28 -3.80 16 14 C -0.49 -13.64 8.64 -34.45 -0.30 -13.94 16 15 H 0.08 2.45 7.79 -52.48 -0.41 2.04 16 16 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 17 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 18 Si 0.88 21.99 24.31 -169.99 -4.13 17.85 16 19 H -0.28 -6.96 6.94 56.52 0.39 -6.57 16 20 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 21 H -0.27 -6.38 6.52 56.52 0.37 -6.01 16 22 H 0.06 0.87 7.53 -51.93 -0.39 0.48 16 23 H 0.05 0.72 6.91 -51.93 -0.36 0.36 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.69 8.13 -51.93 -0.42 0.26 16 27 H 0.06 0.99 7.65 -51.93 -0.40 0.59 16 28 H 0.10 2.03 5.81 -51.93 -0.30 1.73 16 29 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 30 H 0.10 1.64 8.03 -51.93 -0.42 1.22 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.02 0.29 6.23 -51.93 -0.32 -0.04 16 35 H 0.05 0.85 5.95 -51.93 -0.31 0.54 16 36 H 0.07 1.51 7.34 -51.93 -0.38 1.13 16 37 H 0.06 1.25 6.75 -51.93 -0.35 0.90 16 38 H 0.04 0.93 3.49 -51.93 -0.18 0.75 16 39 H 0.03 0.53 6.76 -51.93 -0.35 0.18 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 293.72 15.07 4.43 4.43 Total: -1.00 -29.00 293.72 -7.66 -36.66 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.81 Total: 3.21 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -0.91 Total: -23.97 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.23 Total: -38.18 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.13 Total: 17.85 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.00 -7.66 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691671412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.195 kcal (2) G-P(sol) polarization free energy of solvation -28.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds