Wall clock time and date at job start Mon Mar 30 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47474 * 2 1 4 4 C 1.53001 * 109.47168 * 239.99700 * 2 1 3 5 5 C 1.52994 * 109.47154 * 178.25038 * 4 2 1 6 6 C 1.53000 * 109.47137 * 186.11936 * 5 4 2 7 7 C 1.53000 * 117.50273 * 243.61973 * 6 5 4 8 8 C 1.52995 * 60.00159 * 252.51389 * 7 6 5 9 9 N 1.46905 * 109.46831 * 119.99907 * 2 1 3 10 10 C 1.46898 * 110.99812 * 330.43291 * 9 2 1 11 11 C 1.46901 * 110.99956 * 206.47707 * 9 2 1 12 12 H 1.09003 * 109.46702 * 316.63723 * 11 9 2 13 13 C 1.53006 * 109.46781 * 76.63490 * 11 9 2 14 14 C 1.50689 * 109.47318 * 196.63818 * 11 9 2 15 15 H 1.08004 * 120.00015 * 359.97438 * 14 11 9 16 16 C 1.37873 * 120.00252 * 179.72877 * 14 11 9 17 17 N 1.31515 * 120.00333 * 180.27725 * 16 14 11 18 18 Si 1.86799 * 119.99982 * 0.27027 * 16 14 11 19 19 H 1.48500 * 109.47409 * 90.00151 * 18 16 14 20 20 H 1.48497 * 109.47633 * 210.00598 * 18 16 14 21 21 H 1.48501 * 109.46966 * 330.00224 * 18 16 14 22 22 H 1.09003 * 109.47493 * 186.01096 * 1 2 3 23 23 H 1.08998 * 109.47470 * 306.01287 * 1 2 3 24 24 H 1.08999 * 109.46953 * 66.01411 * 1 2 3 25 25 H 1.09000 * 109.47362 * 298.25233 * 4 2 1 26 26 H 1.09000 * 109.47024 * 58.25149 * 4 2 1 27 27 H 1.09004 * 109.47096 * 306.11966 * 5 4 2 28 28 H 1.09005 * 109.47186 * 66.12176 * 5 4 2 29 29 H 1.09002 * 115.54991 * 29.33536 * 6 5 4 30 30 H 1.09004 * 117.49403 * 0.02562 * 7 6 5 31 31 H 1.08992 * 117.49772 * 145.01766 * 7 6 5 32 32 H 1.09003 * 117.49727 * 252.50872 * 8 7 6 33 33 H 1.08996 * 117.50210 * 107.48737 * 8 7 6 34 34 H 1.08999 * 109.46865 * 296.04262 * 10 9 2 35 35 H 1.08998 * 109.47251 * 56.04959 * 10 9 2 36 36 H 1.09004 * 109.46752 * 176.04924 * 10 9 2 37 37 H 1.08991 * 109.46675 * 66.54157 * 13 11 9 38 38 H 1.08997 * 109.46625 * 186.53730 * 13 11 9 39 39 H 1.08999 * 109.47254 * 306.53823 * 13 11 9 40 40 H 0.97001 * 120.00063 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5693 -0.6833 -1.2714 6 6 4.0749 -1.2681 -2.5918 7 6 4.9120 -2.5469 -2.5235 8 6 5.5804 -1.2121 -2.8587 9 7 2.0196 -0.6925 1.1995 10 6 1.0704 -0.5534 2.3120 11 6 3.3525 -0.2066 1.5807 12 1 3.9722 -0.1089 0.6893 13 6 3.2223 1.1566 2.2634 14 6 3.9911 -1.1857 2.5316 15 1 3.4598 -2.0794 2.8240 16 6 5.2557 -0.9432 3.0245 17 7 5.8152 -1.8004 3.8502 18 14 6.1743 0.6029 2.5195 19 1 5.8626 1.6978 3.4731 20 1 7.6353 0.3370 2.5316 21 1 5.7555 1.0032 1.1522 22 1 -0.3634 -1.0220 0.1076 23 1 -0.3634 0.6042 0.8312 24 1 -0.3633 0.4178 -0.9389 25 1 1.7025 -1.7576 -1.2337 26 1 1.6513 -0.2259 -2.1389 27 1 3.9085 0.3484 -1.1774 28 1 3.9595 -1.2712 -0.4406 29 1 3.4076 -1.1479 -3.4453 30 1 5.1022 -2.9719 -1.5379 31 1 4.7954 -3.2685 -3.3320 32 1 5.9036 -1.0555 -3.8878 33 1 6.2106 -0.7587 -2.0937 34 1 0.9922 0.4967 2.5936 35 1 0.0918 -0.9205 2.0027 36 1 1.4230 -1.1331 3.1651 37 1 2.7018 1.0386 3.2137 38 1 4.2150 1.5698 2.4416 39 1 2.6574 1.8321 1.6211 40 1 6.7051 -1.6299 4.1966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691671412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:21 Heat of formation + Delta-G solvation = 14.370503 kcal Electronic energy + Delta-G solvation = -16803.275459 eV Core-core repulsion = 14425.473977 eV Total energy + Delta-G solvation = -2377.801482 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.11018 -38.17797 -35.35156 -33.65009 -32.10374 -29.44938 -27.27681 -27.03320 -24.62090 -23.19994 -22.27900 -21.34679 -20.07099 -18.56605 -17.48266 -16.60788 -16.46183 -15.78622 -15.30158 -14.99991 -14.73553 -14.42649 -14.17114 -13.97886 -13.56997 -13.29703 -12.95211 -12.63920 -12.47851 -12.41170 -12.32007 -12.25381 -12.02646 -11.81763 -11.67033 -11.51726 -11.35753 -10.90214 -10.83973 -10.66512 -10.60344 -8.77911 -8.25965 -6.25495 1.26153 1.31133 1.40601 2.30882 2.96236 3.09063 3.33813 3.76888 4.07625 4.08961 4.21900 4.27380 4.39318 4.49325 4.53493 4.60240 4.61988 4.70265 4.73954 4.78526 4.79956 4.88675 4.96605 5.00535 5.05135 5.11747 5.23666 5.24456 5.30221 5.31816 5.33501 5.50106 5.54776 5.65121 5.72844 6.15133 6.55604 6.79973 6.83492 7.38246 8.91614 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.012785 C = 0.008636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.258698 B = 2189.588642 C = 3241.443519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 H 0.036 0.964 4 C -0.089 4.089 5 C -0.098 4.098 6 C -0.146 4.146 7 C -0.187 4.187 8 C -0.186 4.186 9 N -0.534 5.534 10 C 0.033 3.967 11 C 0.168 3.832 12 H 0.059 0.941 13 C -0.181 4.181 14 C -0.489 4.489 15 H 0.034 0.966 16 C 0.012 3.988 17 N -0.952 5.952 18 Si 0.941 3.059 19 H -0.272 1.272 20 H -0.300 1.300 21 H -0.249 1.249 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.123 0.877 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.050 0.950 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 5.675 -13.315 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.043 4.043 3 H 0.054 0.946 4 C -0.127 4.127 5 C -0.135 4.135 6 C -0.164 4.164 7 C -0.224 4.224 8 C -0.223 4.223 9 N -0.258 5.258 10 C -0.115 4.115 11 C 0.060 3.940 12 H 0.076 0.924 13 C -0.239 4.239 14 C -0.528 4.528 15 H 0.052 0.948 16 C -0.184 4.184 17 N -0.593 5.593 18 Si 0.769 3.231 19 H -0.198 1.198 20 H -0.228 1.228 21 H -0.173 1.173 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.141 0.859 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.479 5.134 -13.335 16.128 hybrid contribution 0.971 1.120 0.916 1.742 sum -6.509 6.254 -12.419 15.353 Atomic orbital electron populations 1.21983 0.93194 1.02321 1.02548 1.21870 0.95957 0.95298 0.91144 0.94614 1.21483 0.93897 1.00873 0.96469 1.21409 0.97182 0.99470 0.95436 1.22436 0.93566 1.01084 0.99305 1.23031 1.05316 0.91539 1.02532 1.23008 0.95504 1.01084 1.02733 1.62120 1.02254 1.56744 1.04652 1.22350 0.96283 0.98892 0.93985 1.20002 0.88612 0.89949 0.95413 0.92354 1.22716 0.99817 1.00001 1.01402 1.21185 1.00102 1.06256 1.25225 0.94809 1.25680 0.98308 0.99401 0.95060 1.70038 1.16321 1.38436 1.34513 0.85981 0.76654 0.80242 0.80266 1.19822 1.22774 1.17278 0.92009 0.92444 0.90430 0.92133 0.89773 0.93311 0.92807 0.85888 0.91101 0.87097 0.86741 0.90731 0.95667 0.89983 0.94410 0.93108 0.94920 0.92444 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 7.84 71.98 0.56 -2.86 16 2 C 0.07 2.04 2.47 44.91 0.11 2.15 16 3 H 0.04 1.14 6.49 -2.39 -0.02 1.13 16 4 C -0.09 -2.56 4.88 30.59 0.15 -2.41 16 5 C -0.10 -3.24 3.87 30.59 0.12 -3.12 16 6 C -0.15 -3.99 5.74 -10.79 -0.06 -4.05 16 7 C -0.19 -5.29 10.18 30.59 0.31 -4.98 16 8 C -0.19 -4.99 10.25 30.59 0.31 -4.68 16 9 N -0.53 -21.32 4.40 -876.19 -3.86 -25.18 16 10 C 0.03 1.22 7.52 127.69 0.96 2.18 16 11 C 0.17 7.80 1.05 44.17 0.05 7.84 16 12 H 0.06 2.74 3.21 -2.39 -0.01 2.73 16 13 C -0.18 -7.69 7.46 71.98 0.54 -7.15 16 14 C -0.49 -28.16 8.64 25.60 0.22 -27.94 16 15 H 0.03 2.20 7.79 -2.91 -0.02 2.18 16 16 C 0.01 0.70 5.45 84.65 0.46 1.16 16 17 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 18 Si 0.94 45.86 24.31 68.60 1.67 47.53 16 19 H -0.27 -12.74 6.94 99.48 0.69 -12.05 16 20 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 21 H -0.25 -11.21 6.52 99.48 0.65 -10.56 16 22 H 0.06 1.50 7.53 -2.39 -0.02 1.48 16 23 H 0.06 1.33 6.91 -2.39 -0.02 1.32 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 27 H 0.05 1.65 7.65 -2.39 -0.02 1.64 16 28 H 0.05 2.27 5.81 -2.38 -0.01 2.25 16 29 H 0.12 2.72 8.07 -2.39 -0.02 2.70 16 30 H 0.07 2.41 8.03 -2.38 -0.02 2.39 16 31 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.02 0.87 6.23 -2.39 -0.01 0.86 16 35 H 0.08 2.51 5.95 -2.39 -0.01 2.49 16 36 H 0.04 1.62 7.34 -2.38 -0.02 1.60 16 37 H 0.05 2.19 6.75 -2.39 -0.02 2.17 16 38 H 0.03 1.43 3.49 -2.39 -0.01 1.42 16 39 H 0.06 2.08 6.76 -2.39 -0.02 2.06 16 40 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -65.42 293.72 2.76 -62.66 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.92 Total: 19.14 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 3.73 Total: -43.87 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -3.56 Total: -85.46 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.67 Total: 47.53 kcal Total: -65.42 2.76 -62.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691671412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.028 kcal (2) G-P(sol) polarization free energy of solvation -65.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds