Wall clock time and date at job start Mon Mar 30 2020 02:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46906 * 2 1 4 4 C 1.53000 * 109.47109 * 119.99705 * 2 1 3 5 5 C 1.52997 * 109.47350 * 182.93484 * 4 2 1 6 6 C 1.52999 * 109.47104 * 174.98725 * 5 4 2 7 7 C 1.53003 * 117.49945 * 243.62089 * 6 5 4 8 8 C 1.53005 * 117.49628 * 174.99760 * 6 5 4 9 9 N 1.46896 * 109.47133 * 239.99639 * 2 1 3 10 10 C 1.46906 * 110.99873 * 72.81551 * 9 2 1 11 11 C 1.46900 * 111.00232 * 308.86072 * 9 2 1 12 12 C 1.52997 * 109.47227 * 189.99999 * 11 9 2 13 13 C 1.50704 * 109.47044 * 180.02562 * 12 11 9 14 14 H 1.07995 * 119.99802 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99890 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00291 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00087 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47094 * 90.00035 * 17 15 13 19 19 H 1.48492 * 109.47398 * 210.00220 * 17 15 13 20 20 H 1.48502 * 109.47051 * 330.00309 * 17 15 13 21 21 H 1.09005 * 109.46994 * 300.00892 * 1 2 3 22 22 H 1.09007 * 109.46850 * 60.00029 * 1 2 3 23 23 H 1.08995 * 109.47069 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47251 * 302.93583 * 4 2 1 25 25 H 1.09000 * 109.46910 * 62.93555 * 4 2 1 26 26 H 1.08995 * 109.47121 * 294.98962 * 5 4 2 27 27 H 1.09001 * 109.46679 * 54.98929 * 5 4 2 28 28 H 1.08999 * 115.54897 * 29.33407 * 6 5 4 29 29 H 1.09003 * 117.49424 * 0.02562 * 7 6 5 30 30 H 1.08995 * 117.49933 * 145.02341 * 7 6 5 31 31 H 1.08996 * 117.50068 * 214.97997 * 8 6 5 32 32 H 1.08999 * 117.49657 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.47218 * 290.00280 * 10 9 2 34 34 H 1.09002 * 109.46773 * 50.00414 * 10 9 2 35 35 H 1.08996 * 109.47113 * 170.00296 * 10 9 2 36 36 H 1.09003 * 109.47021 * 70.00078 * 11 9 2 37 37 H 1.09002 * 109.47147 * 310.00375 * 11 9 2 38 38 H 1.09000 * 109.47201 * 299.99722 * 12 11 9 39 39 H 1.08997 * 109.47110 * 59.99631 * 12 11 9 40 40 H 0.96996 * 120.00148 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5682 -0.6576 1.2868 6 6 4.0720 -1.2680 2.5962 7 6 4.8148 -0.3463 3.5656 8 6 5.5853 -1.4058 2.7750 9 7 2.0197 -0.6925 -1.1994 10 6 1.8131 0.1264 -2.4013 11 6 1.3839 -2.0090 -1.3436 12 6 2.0903 -2.7983 -2.4476 13 6 1.4377 -4.1485 -2.5960 14 1 0.6024 -4.4166 -1.9662 15 6 1.9063 -5.0411 -3.5365 16 7 2.9233 -4.7144 -4.3039 17 14 1.0979 -6.7151 -3.7200 18 1 -0.0018 -6.6273 -4.7141 19 1 2.1052 -7.7033 -4.1822 20 1 0.5474 -7.1452 -2.4096 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 1.6343 -0.2386 2.1385 25 1 1.7203 -1.7629 1.2234 26 1 3.9759 -1.2167 0.4447 27 1 3.8902 0.3818 1.2229 28 1 3.4416 -2.0469 3.0249 29 1 4.9441 0.6951 3.2706 30 1 4.6730 -0.5186 4.6324 31 1 5.9504 -2.2751 3.3219 32 1 6.2219 -1.0611 1.9601 33 1 0.7478 0.1808 -2.6253 34 1 2.1997 1.1306 -2.2276 35 1 2.3387 -0.3246 -3.2430 36 1 0.3338 -1.8786 -1.6052 37 1 1.4589 -2.5538 -0.4025 38 1 2.0152 -2.2535 -3.3887 39 1 3.1404 -2.9286 -2.1861 40 1 3.2532 -5.3425 -4.9653 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691672972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:18 Heat of formation + Delta-G solvation = -12.374835 kcal Electronic energy + Delta-G solvation = -15927.167773 eV Core-core repulsion = 13548.206527 eV Total energy + Delta-G solvation = -2378.961247 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.81857 -38.19232 -35.41630 -33.72460 -31.55618 -30.13585 -27.42515 -25.99565 -24.59040 -23.16656 -22.70819 -21.15512 -20.10842 -18.51454 -16.97800 -16.52432 -16.31066 -15.95450 -15.66381 -15.12010 -14.67003 -14.32944 -14.19023 -13.92342 -13.33555 -13.16619 -13.08865 -12.73914 -12.54899 -12.44155 -12.38889 -12.32711 -12.13669 -11.82243 -11.67208 -11.49897 -11.22815 -11.12979 -10.90229 -10.63501 -10.52252 -9.01998 -8.19023 -6.30142 1.39394 1.41087 1.52148 2.40631 2.99978 3.14256 3.19783 3.70651 4.08156 4.13140 4.17566 4.20713 4.36258 4.41440 4.47908 4.60402 4.70344 4.72009 4.77615 4.82708 4.87105 4.91672 4.98960 5.02119 5.10941 5.13922 5.21828 5.28150 5.31523 5.37372 5.48163 5.51920 5.61697 5.71352 5.83710 6.15394 6.39616 6.44706 6.87627 7.38848 8.93205 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022544 B = 0.006404 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.699821 B = 4370.899245 C = 5040.642318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 H 0.091 0.909 4 C -0.100 4.100 5 C -0.072 4.072 6 C -0.164 4.164 7 C -0.166 4.166 8 C -0.193 4.193 9 N -0.545 5.545 10 C 0.031 3.969 11 C 0.083 3.917 12 C 0.037 3.963 13 C -0.543 4.543 14 H 0.058 0.942 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.964 3.036 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.263 1.263 21 H 0.079 0.921 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.022 0.978 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.020 0.980 37 H 0.060 0.940 38 H -0.009 1.009 39 H -0.011 1.011 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 10.546 13.221 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.031 4.031 3 H 0.109 0.891 4 C -0.138 4.138 5 C -0.110 4.110 6 C -0.182 4.182 7 C -0.203 4.203 8 C -0.230 4.230 9 N -0.269 5.269 10 C -0.117 4.117 11 C -0.045 4.045 12 C -0.001 4.001 13 C -0.581 4.581 14 H 0.076 0.924 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.789 3.211 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.187 1.187 21 H 0.098 0.902 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.041 0.959 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.079 0.921 38 H 0.010 0.990 39 H 0.007 0.993 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.346 10.421 13.148 16.780 hybrid contribution -0.964 -0.981 -0.770 1.576 sum -1.310 9.440 12.378 15.622 Atomic orbital electron populations 1.22405 0.97197 1.01730 1.02506 1.21878 0.92981 0.98116 0.90113 0.89115 1.21567 0.95608 1.00044 0.96594 1.20934 0.95327 1.00007 0.94715 1.22397 0.94632 1.02788 0.98352 1.23079 1.03371 0.96160 0.97674 1.23004 0.94480 1.01979 1.03554 1.62192 1.58260 1.03177 1.03237 1.22304 0.98922 0.97644 0.92870 1.21947 0.94676 0.89062 0.98809 1.18912 0.94648 0.93530 0.92994 1.21627 1.16261 1.01223 1.19018 0.92422 1.25945 0.95540 1.02799 0.95306 1.70112 1.26729 1.37555 1.22832 0.85463 0.78186 0.78683 0.78807 1.19715 1.20689 1.18748 0.90234 0.93052 0.93641 0.89861 0.93512 0.93517 0.91684 0.88393 0.88276 0.87874 0.88568 0.89412 0.95915 0.89851 0.93606 0.96226 0.92116 0.99022 0.99282 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.59 8.41 71.98 0.61 -3.99 16 2 C 0.08 2.13 2.32 44.92 0.10 2.24 16 3 H 0.09 2.20 7.87 -2.39 -0.02 2.18 16 4 C -0.10 -2.64 4.60 30.59 0.14 -2.50 16 5 C -0.07 -1.96 5.30 30.59 0.16 -1.80 16 6 C -0.16 -3.93 5.74 -10.79 -0.06 -3.99 16 7 C -0.17 -3.18 10.18 30.60 0.31 -2.87 16 8 C -0.19 -4.36 10.25 30.60 0.31 -4.05 16 9 N -0.54 -19.66 4.15 -897.04 -3.72 -23.38 16 10 C 0.03 1.04 8.88 127.69 1.13 2.18 16 11 C 0.08 3.58 3.75 86.30 0.32 3.90 16 12 C 0.04 2.01 4.89 29.85 0.15 2.16 16 13 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 14 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 15 C 0.00 0.11 5.46 84.65 0.46 0.57 16 16 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 17 Si 0.96 45.05 29.54 68.60 2.03 47.07 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 21 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 22 H 0.05 1.32 7.02 -2.38 -0.02 1.30 16 23 H 0.04 1.32 6.54 -2.39 -0.02 1.30 16 24 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.05 1.42 6.36 -2.39 -0.02 1.40 16 26 H 0.05 1.60 7.84 -2.39 -0.02 1.58 16 27 H 0.06 1.60 7.88 -2.39 -0.02 1.58 16 28 H 0.10 2.38 8.07 -2.39 -0.02 2.36 16 29 H 0.10 1.74 8.03 -2.39 -0.02 1.72 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.02 0.74 7.08 -2.39 -0.02 0.72 16 34 H 0.08 2.28 7.90 -2.39 -0.02 2.26 16 35 H 0.05 1.79 6.77 -2.39 -0.02 1.78 16 36 H 0.02 0.85 6.77 -2.39 -0.02 0.83 16 37 H 0.06 2.63 6.18 -2.39 -0.01 2.61 16 38 H -0.01 -0.50 6.69 -2.39 -0.02 -0.52 16 39 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 40 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -64.65 313.07 3.44 -61.21 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.97 Total: 12.54 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.87 Total: -39.66 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -3.44 Total: -81.16 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.65 3.44 -61.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691672972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.840 kcal (2) G-P(sol) polarization free energy of solvation -64.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds