Wall clock time and date at job start Mon Mar 30 2020 02:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50698 * 109.46984 * 175.00062 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47359 * 59.99932 * 9 7 5 11 11 H 1.48500 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46855 * 299.99342 * 9 7 5 13 13 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 14 14 C 1.46900 * 110.99890 * 274.99873 * 13 2 1 15 15 C 1.52996 * 109.47450 * 180.02562 * 14 13 2 16 16 H 1.09010 * 109.46831 * 304.99917 * 15 14 13 17 17 C 1.52993 * 109.47246 * 64.99844 * 15 14 13 18 18 C 1.53001 * 109.47389 * 185.00326 * 15 14 13 19 19 C 1.53780 * 113.61651 * 159.13559 * 18 15 14 20 20 C 1.53953 * 87.02002 * 220.04845 * 19 18 15 21 21 C 1.53773 * 87.11199 * 25.36106 * 20 19 18 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 26 26 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 27 27 H 0.96997 * 119.99784 * 180.02562 * 8 7 5 28 28 H 1.00901 * 111.00276 * 151.05158 * 13 2 1 29 29 H 1.09002 * 109.47391 * 300.00224 * 14 13 2 30 30 H 1.09005 * 109.47266 * 59.99895 * 14 13 2 31 31 H 1.09005 * 109.47495 * 180.02562 * 17 15 14 32 32 H 1.09003 * 109.47572 * 300.00630 * 17 15 14 33 33 H 1.09001 * 109.47293 * 60.00194 * 17 15 14 34 34 H 1.09002 * 112.84887 * 290.32906 * 18 15 14 35 35 H 1.09001 * 113.61358 * 334.56760 * 19 18 15 36 36 H 1.08992 * 113.61636 * 105.46488 * 19 18 15 37 37 H 1.09002 * 113.53475 * 270.80849 * 20 19 18 38 38 H 1.08999 * 113.74734 * 139.94824 * 20 19 18 39 39 H 1.09001 * 113.61823 * 220.09177 * 21 20 19 40 40 H 1.09005 * 113.61740 * 89.18941 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5390 7 6 4.2305 -1.1928 -2.3582 8 7 3.5765 -1.8371 -3.2999 9 14 6.0922 -1.0615 -2.4364 10 1 6.6839 -1.6884 -1.2273 11 1 6.5872 -1.7615 -3.6489 12 1 6.4855 0.3693 -2.4951 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5961 -0.5328 3.5742 16 1 1.9707 -1.4082 3.7501 17 6 4.0397 -0.9778 3.3319 18 6 2.5438 0.3852 4.7970 19 6 2.5412 -0.3714 6.1358 20 6 1.5097 0.6612 6.6255 21 6 1.1246 0.8606 5.1502 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.7517 -1.7715 -1.2055 26 1 1.6055 -0.2618 -2.1369 27 1 4.0609 -2.2439 -4.0352 28 1 2.9173 -1.1205 1.0288 29 1 2.7588 1.0462 2.1183 30 1 1.0870 0.6163 2.5525 31 1 4.4056 -1.5164 4.2061 32 1 4.0771 -1.6318 2.4607 33 1 4.6651 -0.1025 3.1560 34 1 3.2759 1.1915 4.7526 35 1 2.1449 -1.3843 6.0642 36 1 3.4926 -0.3246 6.6656 37 1 1.9594 1.5428 7.0824 38 1 0.7117 0.2313 7.2309 39 1 0.9339 1.9006 4.8854 40 1 0.3402 0.1852 4.8085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692829811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:54 Heat of formation + Delta-G solvation = -14.608181 kcal Electronic energy + Delta-G solvation = -15982.212026 eV Core-core repulsion = 13603.153934 eV Total energy + Delta-G solvation = -2379.058092 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.25034 -36.63837 -33.70653 -32.25356 -29.24327 -27.36821 -26.30382 -25.27050 -24.00637 -22.71520 -20.07991 -19.54750 -19.13155 -16.32005 -15.59898 -15.26744 -15.10641 -14.47490 -14.08885 -13.40810 -13.19856 -12.74516 -12.47229 -12.39217 -11.86841 -11.76762 -11.74420 -11.54842 -11.21408 -11.09930 -10.84494 -10.70134 -10.58410 -10.54453 -10.37539 -10.12432 -9.90099 -9.84859 -9.14258 -9.03694 -8.37452 -7.54980 -6.00801 -4.03775 3.31632 3.36655 3.38498 4.44446 4.56831 4.65784 4.72519 4.85001 5.11684 5.33341 5.36426 5.51362 5.57549 5.64289 5.75458 5.77716 5.85250 5.95323 5.96302 6.00239 6.08103 6.13147 6.26695 6.34309 6.36422 6.37395 6.43427 6.56140 6.62797 6.73435 6.98325 7.00738 7.58649 7.66823 7.99432 8.14008 8.35694 8.42405 9.02231 9.60110 11.10135 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.006180 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.287921 B = 4529.549820 C = 5214.312063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.027 0.973 4 C 0.020 3.980 5 C -0.523 4.523 6 H 0.050 0.950 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.685 5.685 14 C 0.065 3.935 15 C -0.079 4.079 16 H 0.076 0.924 17 C -0.149 4.149 18 C -0.103 4.103 19 C -0.135 4.135 20 C -0.144 4.144 21 C -0.136 4.136 22 H 0.054 0.946 23 H 0.035 0.965 24 H 0.046 0.954 25 H 0.025 0.975 26 H 0.020 0.980 27 H 0.261 0.739 28 H 0.353 0.647 29 H 0.019 0.981 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.834 3.881 16.026 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.017 4.017 5 C -0.561 4.561 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.320 5.320 14 C -0.064 4.064 15 C -0.097 4.097 16 H 0.094 0.906 17 C -0.206 4.206 18 C -0.122 4.122 19 C -0.173 4.173 20 C -0.182 4.182 21 C -0.174 4.174 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.175 0.825 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.419 3.526 16.006 16.742 hybrid contribution 1.873 0.655 -0.399 2.023 sum -1.546 4.181 15.607 16.231 Atomic orbital electron populations 1.21787 0.96865 1.01219 0.99350 1.21596 0.93276 0.95814 0.91591 0.95511 1.19276 0.95363 0.96175 0.90887 1.21139 0.92260 1.34494 1.08251 0.93132 1.24982 0.98162 0.95209 0.95703 1.69952 1.35557 1.35574 1.11942 0.86713 0.86004 0.78152 0.77469 1.20194 1.21256 1.20380 1.60606 1.34750 1.32192 1.04404 1.21933 0.99360 0.94006 0.91140 1.21134 0.96981 0.98048 0.93569 0.90575 1.21826 0.95927 1.01252 1.01627 1.22561 0.97258 0.98286 0.94097 1.22961 0.99025 0.98468 0.96811 1.22845 0.99170 0.99398 0.96771 1.22917 0.97430 1.01299 0.95717 0.92715 0.94568 0.93462 0.95637 0.96148 0.92916 0.82480 0.96278 0.91976 0.93169 0.91724 0.93194 0.89730 0.90147 0.91967 0.90652 0.91844 0.91873 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.41 37.16 0.35 -2.14 16 2 C 0.09 1.86 2.59 -67.71 -0.18 1.68 16 3 H 0.03 0.59 7.80 -51.93 -0.40 0.19 16 4 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 5 C -0.52 -14.52 8.12 -34.44 -0.28 -14.80 16 6 H 0.05 1.37 7.49 -52.48 -0.39 0.97 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -13.47 6.31 -106.72 -0.67 -14.14 16 14 C 0.07 1.07 4.84 -3.83 -0.02 1.05 16 15 C -0.08 -1.09 2.32 -90.63 -0.21 -1.30 16 16 H 0.08 1.10 7.98 -51.92 -0.41 0.68 16 17 C -0.15 -2.11 8.95 37.15 0.33 -1.78 16 18 C -0.10 -1.20 3.11 -89.81 -0.28 -1.47 16 19 C -0.14 -1.37 7.63 -25.83 -0.20 -1.57 16 20 C -0.14 -1.36 8.09 -25.83 -0.21 -1.57 16 21 C -0.14 -1.46 6.66 -25.92 -0.17 -1.64 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 23 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.35 7.52 5.46 -39.29 -0.21 7.30 16 29 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 30 H 0.06 0.98 6.63 -51.93 -0.34 0.63 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.03 6.68 -51.93 -0.35 0.68 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.82 7.99 -51.93 -0.41 0.41 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 313.69 15.07 4.73 4.73 Total: -1.00 -28.56 313.69 -8.86 -37.42 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.54 Total: 2.91 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -1.08 Total: -21.50 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.06 Total: -40.07 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.56 -8.86 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692829811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.811 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds