Wall clock time and date at job start Mon Mar 30 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50698 * 109.46984 * 175.00062 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47359 * 59.99932 * 9 7 5 11 11 H 1.48500 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46855 * 299.99342 * 9 7 5 13 13 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 14 14 C 1.46900 * 110.99890 * 274.99873 * 13 2 1 15 15 C 1.52996 * 109.47450 * 180.02562 * 14 13 2 16 16 H 1.09010 * 109.46831 * 304.99917 * 15 14 13 17 17 C 1.52993 * 109.47246 * 64.99844 * 15 14 13 18 18 C 1.53001 * 109.47389 * 185.00326 * 15 14 13 19 19 C 1.53780 * 113.61651 * 159.13559 * 18 15 14 20 20 C 1.53953 * 87.02002 * 220.04845 * 19 18 15 21 21 C 1.53773 * 87.11199 * 25.36106 * 20 19 18 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 26 26 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 27 27 H 0.96997 * 119.99784 * 180.02562 * 8 7 5 28 28 H 1.00901 * 111.00276 * 151.05158 * 13 2 1 29 29 H 1.09002 * 109.47391 * 300.00224 * 14 13 2 30 30 H 1.09005 * 109.47266 * 59.99895 * 14 13 2 31 31 H 1.09005 * 109.47495 * 180.02562 * 17 15 14 32 32 H 1.09003 * 109.47572 * 300.00630 * 17 15 14 33 33 H 1.09001 * 109.47293 * 60.00194 * 17 15 14 34 34 H 1.09002 * 112.84887 * 290.32906 * 18 15 14 35 35 H 1.09001 * 113.61358 * 334.56760 * 19 18 15 36 36 H 1.08992 * 113.61636 * 105.46488 * 19 18 15 37 37 H 1.09002 * 113.53475 * 270.80849 * 20 19 18 38 38 H 1.08999 * 113.74734 * 139.94824 * 20 19 18 39 39 H 1.09001 * 113.61823 * 220.09177 * 21 20 19 40 40 H 1.09005 * 113.61740 * 89.18941 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5390 7 6 4.2305 -1.1928 -2.3582 8 7 3.5765 -1.8371 -3.2999 9 14 6.0922 -1.0615 -2.4364 10 1 6.6839 -1.6884 -1.2273 11 1 6.5872 -1.7615 -3.6489 12 1 6.4855 0.3693 -2.4951 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5961 -0.5328 3.5742 16 1 1.9707 -1.4082 3.7501 17 6 4.0397 -0.9778 3.3319 18 6 2.5438 0.3852 4.7970 19 6 2.5412 -0.3714 6.1358 20 6 1.5097 0.6612 6.6255 21 6 1.1246 0.8606 5.1502 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.7517 -1.7715 -1.2055 26 1 1.6055 -0.2618 -2.1369 27 1 4.0609 -2.2439 -4.0352 28 1 2.9173 -1.1205 1.0288 29 1 2.7588 1.0462 2.1183 30 1 1.0870 0.6163 2.5525 31 1 4.4056 -1.5164 4.2061 32 1 4.0771 -1.6318 2.4607 33 1 4.6651 -0.1025 3.1560 34 1 3.2759 1.1915 4.7526 35 1 2.1449 -1.3843 6.0642 36 1 3.4926 -0.3246 6.6656 37 1 1.9594 1.5428 7.0824 38 1 0.7117 0.2313 7.2309 39 1 0.9339 1.9006 4.8854 40 1 0.3402 0.1852 4.8085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692829811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:53 Heat of formation + Delta-G solvation = -30.335728 kcal Electronic energy + Delta-G solvation = -15982.894024 eV Core-core repulsion = 13603.153934 eV Total energy + Delta-G solvation = -2379.740090 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.20796 -38.19027 -35.31139 -34.09379 -30.79609 -29.27427 -27.38860 -26.13759 -25.47208 -24.46374 -21.23679 -21.08752 -20.19082 -18.51276 -16.99695 -16.49602 -16.37683 -16.10543 -15.51523 -14.76320 -14.64229 -14.25864 -13.62015 -13.49953 -13.42855 -13.25595 -13.17548 -12.91143 -12.73159 -12.60148 -12.48573 -12.40722 -12.17819 -11.72992 -11.71448 -11.33029 -11.26693 -11.03468 -10.86578 -10.69678 -10.57199 -9.15394 -8.19781 -6.30546 1.38677 1.40769 1.48598 2.39585 3.11508 3.42286 3.76121 3.83931 3.94894 4.03644 4.19845 4.31761 4.43202 4.47165 4.60616 4.70319 4.72223 4.84405 4.86454 4.95639 4.96436 4.98139 5.05021 5.09874 5.14320 5.19673 5.22168 5.32981 5.35648 5.38713 5.50424 5.52657 5.57744 5.74593 5.83576 6.20682 6.45825 6.69381 6.84075 7.38089 8.91738 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.006180 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.287921 B = 4529.549820 C = 5214.312063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.093 3.907 3 H 0.020 0.980 4 C 0.027 3.973 5 C -0.535 4.535 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.270 1.270 13 N -0.687 5.687 14 C 0.068 3.932 15 C -0.071 4.071 16 H 0.071 0.929 17 C -0.147 4.147 18 C -0.105 4.105 19 C -0.132 4.132 20 C -0.136 4.136 21 C -0.139 4.139 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.051 0.949 25 H -0.003 1.003 26 H -0.006 1.006 27 H 0.263 0.737 28 H 0.342 0.658 29 H 0.011 0.989 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 4.605 17.972 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.016 4.016 3 H 0.038 0.962 4 C -0.010 4.010 5 C -0.573 4.573 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.195 1.195 13 N -0.320 5.320 14 C -0.061 4.061 15 C -0.089 4.089 16 H 0.090 0.910 17 C -0.205 4.205 18 C -0.124 4.124 19 C -0.170 4.170 20 C -0.173 4.173 21 C -0.176 4.176 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.015 0.985 26 H 0.013 0.987 27 H 0.072 0.928 28 H 0.162 0.838 29 H 0.029 0.971 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.854 4.262 17.973 18.690 hybrid contribution 1.659 0.428 -1.010 1.989 sum -1.195 4.690 16.963 17.640 Atomic orbital electron populations 1.21698 0.94485 1.01393 1.00851 1.21433 0.95173 0.94633 0.90395 0.96183 1.19138 0.94901 0.94699 0.92269 1.21461 0.93234 1.34279 1.08324 0.92721 1.25881 1.03349 0.94743 0.95269 1.70087 1.37636 1.36575 1.12668 0.85596 0.79768 0.78470 0.77803 1.19047 1.20885 1.19547 1.60665 1.34011 1.32819 1.04538 1.22017 0.99877 0.93450 0.90793 1.21065 0.96393 0.98073 0.93406 0.91021 1.21804 0.96310 1.00899 1.01440 1.22557 0.98071 0.98158 0.93598 1.22952 0.99787 0.98499 0.95725 1.22820 0.99078 0.99486 0.95948 1.22929 0.96573 1.01247 0.96874 0.93193 0.92050 0.92965 0.98461 0.98744 0.92788 0.83765 0.97111 0.91013 0.91291 0.94031 0.93383 0.89637 0.90231 0.91133 0.89674 0.90931 0.91670 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.41 71.98 0.68 -3.92 16 2 C 0.09 4.02 2.59 44.92 0.12 4.14 16 3 H 0.02 0.89 7.80 -2.39 -0.02 0.87 16 4 C 0.03 1.46 4.57 29.85 0.14 1.60 16 5 C -0.53 -30.17 8.12 25.60 0.21 -29.96 16 6 H 0.05 2.97 7.49 -2.91 -0.02 2.95 16 7 C 0.01 0.34 5.46 84.66 0.46 0.80 16 8 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 9 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 N -0.69 -27.00 6.31 -491.56 -3.10 -30.10 16 14 C 0.07 2.15 4.84 86.30 0.42 2.57 16 15 C -0.07 -1.86 2.32 -10.80 -0.03 -1.89 16 16 H 0.07 1.97 7.98 -2.38 -0.02 1.95 16 17 C -0.15 -4.02 8.95 71.98 0.64 -3.38 16 18 C -0.10 -2.21 3.11 -10.27 -0.03 -2.24 16 19 C -0.13 -2.34 7.63 31.18 0.24 -2.10 16 20 C -0.14 -2.17 8.09 31.18 0.25 -1.92 16 21 C -0.14 -2.66 6.66 31.12 0.21 -2.46 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.06 1.91 7.45 -2.39 -0.02 1.90 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 27 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.34 14.77 5.46 -89.69 -0.49 14.28 16 29 H 0.01 0.36 8.06 -2.39 -0.02 0.34 16 30 H 0.07 2.14 6.63 -2.38 -0.02 2.12 16 31 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.04 1.32 6.68 -2.39 -0.02 1.30 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.43 7.99 -2.39 -0.02 1.42 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.57 8.10 -2.38 -0.02 1.55 16 Total: -1.00 -61.18 313.69 2.99 -58.18 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.48 Total: 20.80 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 3.30 Total: -38.76 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -2.82 Total: -86.52 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -61.18 2.99 -58.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692829811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.848 kcal (2) G-P(sol) polarization free energy of solvation -61.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds