Wall clock time and date at job start Mon Mar 30 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 119.99885 * 2 1 3 5 5 C 1.50699 * 109.47078 * 184.99926 * 4 2 1 6 6 H 1.08007 * 120.00099 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00509 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99310 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00543 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47107 * 59.99994 * 9 7 5 11 11 H 1.48493 * 109.47441 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47390 * 300.00298 * 9 7 5 13 13 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 14 14 C 1.46906 * 110.99888 * 84.99977 * 13 2 1 15 15 C 1.52999 * 109.46897 * 179.97438 * 14 13 2 16 16 H 1.08994 * 109.47465 * 305.00164 * 15 14 13 17 17 C 1.53002 * 109.47069 * 65.00435 * 15 14 13 18 18 C 1.53003 * 109.47015 * 184.99888 * 15 14 13 19 19 C 1.53778 * 113.61673 * 159.13736 * 18 15 14 20 20 C 1.53956 * 87.01963 * 220.05152 * 19 18 15 21 21 C 1.53772 * 87.11288 * 25.36426 * 20 19 18 22 22 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 23 23 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 25 25 H 1.08999 * 109.47075 * 304.99534 * 4 2 1 26 26 H 1.08997 * 109.47201 * 65.00055 * 4 2 1 27 27 H 0.97007 * 119.99690 * 179.97438 * 8 7 5 28 28 H 1.00902 * 111.00533 * 321.04383 * 13 2 1 29 29 H 1.09000 * 109.47033 * 300.00113 * 14 13 2 30 30 H 1.09001 * 109.46544 * 60.00058 * 14 13 2 31 31 H 1.09001 * 109.46743 * 179.97438 * 17 15 14 32 32 H 1.09000 * 109.47048 * 299.99452 * 17 15 14 33 33 H 1.08994 * 109.47199 * 59.99565 * 17 15 14 34 34 H 1.09004 * 112.85327 * 290.34100 * 18 15 14 35 35 H 1.09003 * 113.61548 * 334.57291 * 19 18 15 36 36 H 1.08997 * 113.61320 * 105.47287 * 19 18 15 37 37 H 1.08998 * 113.53351 * 270.80952 * 20 19 18 38 38 H 1.09007 * 113.74238 * 139.94631 * 20 19 18 39 39 H 1.09005 * 113.61705 * 220.09068 * 21 20 19 40 40 H 1.08995 * 113.61976 * 89.18711 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1926 2.3584 8 7 3.5763 -1.8368 3.3000 9 14 6.0921 -1.0614 2.4367 10 1 6.4855 0.3694 2.4951 11 1 6.5870 -1.7602 3.6498 12 1 6.6838 -1.6884 1.2276 13 7 2.0197 -0.6926 -1.1994 14 6 2.0824 0.2225 -2.3469 15 6 2.5962 -0.5331 -3.5741 16 1 3.5519 -1.0012 -3.3388 17 6 1.5845 -1.6103 -3.9703 18 6 2.7801 0.4458 -4.7356 19 6 3.7397 -0.0631 -5.8241 20 6 4.2832 1.3751 -5.9043 21 6 3.8101 1.5519 -4.4519 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6054 -0.2617 2.1370 26 1 1.7516 -1.7715 1.2057 27 1 4.0607 -2.2436 4.0355 28 1 1.4496 -1.4981 -1.4100 29 1 1.0870 0.6162 -2.5525 30 1 2.7589 1.0461 -2.1182 31 1 1.9503 -2.1482 -4.8449 32 1 1.4535 -2.3076 -3.1429 33 1 0.6287 -1.1421 -4.2057 34 1 1.8343 0.8201 -5.1275 35 1 4.4696 -0.7860 -5.4596 36 1 3.2348 -0.3914 -6.7326 37 1 3.7489 2.0031 -6.6171 38 1 5.3657 1.4294 -6.0206 39 1 3.3619 2.5256 -4.2540 40 1 4.5591 1.2714 -3.7114 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692829813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:55 Heat of formation + Delta-G solvation = -9.578756 kcal Electronic energy + Delta-G solvation = -15968.296819 eV Core-core repulsion = 13589.456820 eV Total energy + Delta-G solvation = -2378.840000 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.24891 -36.72600 -33.70312 -32.18011 -29.27482 -27.18541 -26.33883 -25.28088 -23.95911 -22.73578 -20.17330 -19.68573 -19.25270 -16.17700 -15.51785 -15.32248 -14.83421 -14.35743 -14.09552 -13.61628 -13.04371 -12.76075 -12.52289 -12.38596 -12.14778 -11.81574 -11.73107 -11.58640 -11.42515 -11.07155 -10.75327 -10.69825 -10.59020 -10.46033 -10.33699 -9.98315 -9.92571 -9.83303 -9.16047 -8.91922 -8.19541 -7.44446 -5.82067 -3.79157 3.44381 3.47835 3.51560 4.56140 4.61519 4.67466 4.73620 4.87166 5.07652 5.29042 5.43313 5.51062 5.55400 5.65376 5.72060 5.80522 5.83144 5.86891 5.88711 5.94726 5.98718 6.01131 6.08357 6.13490 6.28201 6.32003 6.40812 6.50422 6.54667 6.69360 6.74116 7.10979 7.65555 7.77194 8.12108 8.14460 8.27667 8.67464 9.25859 9.81569 11.30170 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.006768 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.321252 B = 4135.895292 C = 4891.037230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 H 0.062 0.938 4 C 0.033 3.967 5 C -0.486 4.486 6 H 0.057 0.943 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.665 5.665 14 C 0.067 3.933 15 C -0.081 4.081 16 H 0.081 0.919 17 C -0.146 4.146 18 C -0.103 4.103 19 C -0.135 4.135 20 C -0.145 4.145 21 C -0.137 4.137 22 H 0.036 0.964 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.257 0.743 28 H 0.329 0.671 29 H 0.014 0.986 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 4.239 -16.470 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.021 4.021 3 H 0.080 0.920 4 C -0.004 4.004 5 C -0.524 4.524 6 H 0.075 0.925 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.295 5.295 14 C -0.063 4.063 15 C -0.100 4.100 16 H 0.099 0.901 17 C -0.203 4.203 18 C -0.122 4.122 19 C -0.173 4.173 20 C -0.182 4.182 21 C -0.175 4.175 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.147 0.853 29 H 0.032 0.968 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.475 4.226 -16.134 16.861 hybrid contribution 0.028 0.117 -0.084 0.147 sum -2.447 4.343 -16.218 16.967 Atomic orbital electron populations 1.22552 0.99729 1.01068 1.00484 1.21778 0.89747 0.98111 0.92451 0.91951 1.19108 0.96187 0.95348 0.89785 1.21116 0.91944 1.32716 1.06651 0.92463 1.25006 0.97914 0.96016 0.96084 1.69961 1.35198 1.37103 1.12398 0.86703 0.86540 0.77896 0.77048 1.20611 1.21668 1.20415 1.60573 1.57669 1.08665 1.02617 1.21944 0.98053 0.95774 0.90506 1.21162 1.00097 0.95277 0.93459 0.90103 1.21804 0.98528 0.98814 1.01159 1.22546 0.97365 0.96406 0.95835 1.22964 0.99007 0.96613 0.98680 1.22845 1.00572 0.97290 0.97508 1.22936 0.99109 0.98767 0.96644 0.94491 0.93145 0.92595 0.96597 0.96587 0.93360 0.85267 0.96779 0.91441 0.93052 0.92194 0.93475 0.89892 0.90052 0.92054 0.90712 0.91772 0.91860 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 9.16 37.16 0.34 -2.78 16 2 C 0.09 1.84 2.53 -67.71 -0.17 1.67 16 3 H 0.06 1.33 7.80 -51.93 -0.40 0.93 16 4 C 0.03 0.86 4.65 -27.88 -0.13 0.73 16 5 C -0.49 -13.98 8.84 -34.44 -0.30 -14.28 16 6 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.91 13.29 55.43 0.74 -27.17 16 9 Si 0.89 22.51 29.54 -169.99 -5.02 17.49 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 13 N -0.66 -12.66 5.96 -106.72 -0.64 -13.30 16 14 C 0.07 1.06 4.84 -3.82 -0.02 1.04 16 15 C -0.08 -1.09 2.32 -90.62 -0.21 -1.30 16 16 H 0.08 1.23 7.98 -51.93 -0.41 0.82 16 17 C -0.15 -1.78 8.95 37.16 0.33 -1.45 16 18 C -0.10 -1.17 3.11 -89.80 -0.28 -1.45 16 19 C -0.14 -1.40 7.63 -25.83 -0.20 -1.60 16 20 C -0.14 -1.44 8.09 -25.83 -0.21 -1.65 16 21 C -0.14 -1.57 6.66 -25.92 -0.17 -1.75 16 22 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 23 H 0.05 0.86 8.13 -51.93 -0.42 0.43 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.33 5.90 6.73 -39.29 -0.26 5.64 16 29 H 0.01 0.21 7.44 -51.93 -0.39 -0.17 16 30 H 0.07 1.13 7.25 -51.93 -0.38 0.75 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.78 6.68 -51.93 -0.35 0.44 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.88 7.99 -51.93 -0.41 0.46 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -30.08 315.34 -8.89 -38.97 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.61 Total: 0.73 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -1.12 Total: -21.48 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.10 Total: -40.47 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.08 -8.89 -38.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692829813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.389 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds