Wall clock time and date at job start Mon Mar 30 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 119.99885 * 2 1 3 5 5 C 1.50699 * 109.47078 * 184.99926 * 4 2 1 6 6 H 1.08007 * 120.00099 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00509 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99310 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00543 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47107 * 59.99994 * 9 7 5 11 11 H 1.48493 * 109.47441 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47390 * 300.00298 * 9 7 5 13 13 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 14 14 C 1.46906 * 110.99888 * 84.99977 * 13 2 1 15 15 C 1.52999 * 109.46897 * 179.97438 * 14 13 2 16 16 H 1.08994 * 109.47465 * 305.00164 * 15 14 13 17 17 C 1.53002 * 109.47069 * 65.00435 * 15 14 13 18 18 C 1.53003 * 109.47015 * 184.99888 * 15 14 13 19 19 C 1.53778 * 113.61673 * 159.13736 * 18 15 14 20 20 C 1.53956 * 87.01963 * 220.05152 * 19 18 15 21 21 C 1.53772 * 87.11288 * 25.36426 * 20 19 18 22 22 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 23 23 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 25 25 H 1.08999 * 109.47075 * 304.99534 * 4 2 1 26 26 H 1.08997 * 109.47201 * 65.00055 * 4 2 1 27 27 H 0.97007 * 119.99690 * 179.97438 * 8 7 5 28 28 H 1.00902 * 111.00533 * 321.04383 * 13 2 1 29 29 H 1.09000 * 109.47033 * 300.00113 * 14 13 2 30 30 H 1.09001 * 109.46544 * 60.00058 * 14 13 2 31 31 H 1.09001 * 109.46743 * 179.97438 * 17 15 14 32 32 H 1.09000 * 109.47048 * 299.99452 * 17 15 14 33 33 H 1.08994 * 109.47199 * 59.99565 * 17 15 14 34 34 H 1.09004 * 112.85327 * 290.34100 * 18 15 14 35 35 H 1.09003 * 113.61548 * 334.57291 * 19 18 15 36 36 H 1.08997 * 113.61320 * 105.47287 * 19 18 15 37 37 H 1.08998 * 113.53351 * 270.80952 * 20 19 18 38 38 H 1.09007 * 113.74238 * 139.94631 * 20 19 18 39 39 H 1.09005 * 113.61705 * 220.09068 * 21 20 19 40 40 H 1.08995 * 113.61976 * 89.18711 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1926 2.3584 8 7 3.5763 -1.8368 3.3000 9 14 6.0921 -1.0614 2.4367 10 1 6.4855 0.3694 2.4951 11 1 6.5870 -1.7602 3.6498 12 1 6.6838 -1.6884 1.2276 13 7 2.0197 -0.6926 -1.1994 14 6 2.0824 0.2225 -2.3469 15 6 2.5962 -0.5331 -3.5741 16 1 3.5519 -1.0012 -3.3388 17 6 1.5845 -1.6103 -3.9703 18 6 2.7801 0.4458 -4.7356 19 6 3.7397 -0.0631 -5.8241 20 6 4.2832 1.3751 -5.9043 21 6 3.8101 1.5519 -4.4519 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6054 -0.2617 2.1370 26 1 1.7516 -1.7715 1.2057 27 1 4.0607 -2.2436 4.0355 28 1 1.4496 -1.4981 -1.4100 29 1 1.0870 0.6162 -2.5525 30 1 2.7589 1.0461 -2.1182 31 1 1.9503 -2.1482 -4.8449 32 1 1.4535 -2.3076 -3.1429 33 1 0.6287 -1.1421 -4.2057 34 1 1.8343 0.8201 -5.1275 35 1 4.4696 -0.7860 -5.4596 36 1 3.2348 -0.3914 -6.7326 37 1 3.7489 2.0031 -6.6171 38 1 5.3657 1.4294 -6.0206 39 1 3.3619 2.5256 -4.2540 40 1 4.5591 1.2714 -3.7114 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692829813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:55 Heat of formation + Delta-G solvation = -26.743085 kcal Electronic energy + Delta-G solvation = -15969.041121 eV Core-core repulsion = 13589.456820 eV Total energy + Delta-G solvation = -2379.584301 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21226 -38.21018 -35.28662 -34.05453 -30.80551 -29.07747 -27.34902 -26.15130 -25.38782 -24.52641 -21.47526 -21.13464 -20.22435 -18.37940 -16.75180 -16.55683 -16.31255 -15.95880 -15.43224 -14.93363 -14.48130 -14.26342 -13.72430 -13.56074 -13.45716 -13.27107 -13.20434 -12.88909 -12.73432 -12.62473 -12.53447 -12.38396 -11.92516 -11.79626 -11.68056 -11.33475 -11.20728 -11.10312 -10.86268 -10.69710 -10.47515 -8.94551 -8.09000 -6.13756 1.40610 1.43842 1.51326 2.47600 3.22552 3.41421 3.75984 3.84038 3.94561 4.02717 4.21371 4.24784 4.42690 4.46966 4.50895 4.59604 4.70749 4.79392 4.88323 4.94502 4.95858 4.97462 5.03588 5.10410 5.13039 5.21445 5.21898 5.27567 5.39192 5.43441 5.50774 5.53013 5.70516 5.75883 5.90759 6.36343 6.54269 6.79027 6.99869 7.51470 9.03034 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.006768 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.321252 B = 4135.895292 C = 4891.037230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 H 0.055 0.945 4 C 0.038 3.962 5 C -0.499 4.499 6 H 0.054 0.946 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.957 3.043 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.683 5.683 14 C 0.072 3.928 15 C -0.076 4.076 16 H 0.057 0.943 17 C -0.141 4.141 18 C -0.099 4.099 19 C -0.132 4.132 20 C -0.137 4.137 21 C -0.145 4.145 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.055 0.945 25 H -0.009 1.009 26 H -0.010 1.010 27 H 0.259 0.741 28 H 0.335 0.665 29 H 0.029 0.971 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 4.874 -18.485 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.012 4.012 3 H 0.073 0.927 4 C 0.000 4.000 5 C -0.537 4.537 6 H 0.072 0.928 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.315 5.315 14 C -0.057 4.057 15 C -0.095 4.095 16 H 0.075 0.925 17 C -0.199 4.199 18 C -0.118 4.118 19 C -0.170 4.170 20 C -0.174 4.174 21 C -0.183 4.183 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.067 0.933 28 H 0.154 0.846 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.432 4.870 -18.168 18.966 hybrid contribution 0.001 -0.082 0.552 0.558 sum -2.431 4.788 -17.616 18.417 Atomic orbital electron populations 1.22399 0.96814 1.01690 1.01828 1.21448 0.92039 0.96716 0.91005 0.92693 1.18999 0.95124 0.94139 0.91729 1.21443 0.93427 1.32374 1.06472 0.92788 1.25874 1.02970 0.95695 0.95758 1.70093 1.37140 1.38026 1.13045 0.85626 0.80531 0.78345 0.77232 1.19546 1.21097 1.19794 1.60413 1.58190 1.09627 1.03258 1.21936 0.98600 0.95050 0.90093 1.21084 0.99173 0.95881 0.93314 0.92459 1.21763 0.98731 0.98223 1.01166 1.22549 0.98126 0.95841 0.95305 1.22936 0.98534 0.96760 0.98735 1.22836 1.00981 0.97114 0.96464 1.22941 0.98942 0.98960 0.97424 0.91763 0.92896 0.92575 0.99083 0.99186 0.93272 0.84596 0.95243 0.92827 0.91741 0.93473 0.92188 0.88563 0.90931 0.90509 0.89127 0.91520 0.91553 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.65 9.16 71.98 0.66 -4.99 16 2 C 0.10 4.07 2.53 44.92 0.11 4.18 16 3 H 0.05 2.35 7.80 -2.39 -0.02 2.33 16 4 C 0.04 2.02 4.65 29.85 0.14 2.16 16 5 C -0.50 -29.25 8.84 25.60 0.23 -29.03 16 6 H 0.05 3.14 7.74 -2.91 -0.02 3.11 16 7 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 8 N -0.94 -59.08 13.29 21.45 0.28 -58.80 16 9 Si 0.96 46.54 29.54 68.60 2.03 48.56 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 13 N -0.68 -25.90 5.96 -491.56 -2.93 -28.83 16 14 C 0.07 2.21 4.84 86.30 0.42 2.62 16 15 C -0.08 -1.95 2.32 -10.79 -0.03 -1.97 16 16 H 0.06 1.74 7.98 -2.39 -0.02 1.73 16 17 C -0.14 -3.18 8.95 71.98 0.64 -2.54 16 18 C -0.10 -2.07 3.11 -10.27 -0.03 -2.10 16 19 C -0.13 -2.44 7.63 31.18 0.24 -2.20 16 20 C -0.14 -2.40 8.09 31.18 0.25 -2.15 16 21 C -0.15 -3.15 6.66 31.12 0.21 -2.94 16 22 H 0.06 1.81 7.45 -2.39 -0.02 1.79 16 23 H 0.05 1.74 8.13 -2.38 -0.02 1.72 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 28 H 0.33 11.89 6.73 -89.69 -0.60 11.28 16 29 H 0.03 0.82 7.44 -2.39 -0.02 0.80 16 30 H 0.05 1.78 7.25 -2.39 -0.02 1.76 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.17 6.68 -2.39 -0.02 1.16 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 35 H 0.07 1.47 7.99 -2.39 -0.02 1.45 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 Total: -1.00 -64.77 315.34 3.05 -61.72 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.37 Total: 16.27 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 3.30 Total: -38.92 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -2.65 Total: -87.63 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -64.77 3.05 -61.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692829813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.977 kcal (2) G-P(sol) polarization free energy of solvation -64.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds