Wall clock time and date at job start Mon Mar 30 2020 02:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47354 * 2 1 4 4 C 1.52998 * 109.47440 * 120.00386 * 2 1 3 5 5 N 1.46908 * 109.47053 * 294.99951 * 4 2 1 6 6 C 1.46894 * 110.99955 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.47779 * 324.99869 * 6 5 4 8 8 C 1.52998 * 109.47018 * 85.00186 * 6 5 4 9 9 C 1.53002 * 109.47229 * 204.99899 * 6 5 4 10 10 C 1.50706 * 109.47153 * 64.99752 * 9 6 5 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 6 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 6 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 C 1.53006 * 109.47028 * 240.00262 * 2 1 3 19 19 C 1.53778 * 113.61337 * 157.49646 * 18 2 1 20 20 C 1.53778 * 87.07918 * 220.01609 * 19 18 2 21 21 C 1.53774 * 87.08114 * 25.43354 * 20 19 18 22 22 H 1.08999 * 109.47198 * 299.99624 * 1 2 3 23 23 H 1.08997 * 109.47190 * 59.99918 * 1 2 3 24 24 H 1.09002 * 109.46869 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47394 * 175.00078 * 4 2 1 26 26 H 1.09003 * 109.47056 * 54.99494 * 4 2 1 27 27 H 1.00904 * 110.99848 * 56.04776 * 5 4 2 28 28 H 1.09007 * 109.46878 * 179.97438 * 8 6 5 29 29 H 1.09001 * 109.46923 * 299.99707 * 8 6 5 30 30 H 1.08995 * 109.47190 * 60.00037 * 8 6 5 31 31 H 1.09004 * 109.47178 * 305.00542 * 9 6 5 32 32 H 1.08993 * 109.47411 * 185.00225 * 9 6 5 33 33 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 34 34 H 1.08999 * 112.84673 * 288.80373 * 18 2 1 35 35 H 1.09002 * 113.61730 * 334.57240 * 19 18 2 36 36 H 1.08999 * 113.61270 * 105.47041 * 19 18 2 37 37 H 1.08998 * 113.62059 * 270.88294 * 20 19 18 38 38 H 1.09006 * 113.68661 * 139.98876 * 20 19 18 39 39 H 1.08999 * 113.61792 * 220.01371 * 21 20 19 40 40 H 1.09010 * 113.61524 * 89.11259 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6514 0.0373 2.4457 6 6 2.1248 -0.6273 3.6671 7 1 2.0808 -1.7081 3.5332 8 6 3.5685 -0.2067 3.9497 9 6 1.2360 -0.2228 4.8450 10 6 -0.1604 -0.7444 4.6230 11 1 -0.3906 -1.3082 3.7311 12 6 -1.1438 -0.5017 5.5582 13 7 -0.8621 0.1804 6.6468 14 14 -2.8745 -1.1487 5.2833 15 1 -3.7357 -0.7613 6.4293 16 1 -3.4262 -0.5703 4.0317 17 1 -2.8373 -2.6289 5.1702 18 6 2.0400 -0.7212 -1.2493 19 6 3.4726 -0.3276 -1.6461 20 6 2.9921 -0.3572 -3.1066 21 6 1.5811 -0.0723 -2.5657 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1264 -0.7995 1.2055 26 1 1.6053 -1.7199 1.2951 27 1 0.6528 0.1791 2.4754 28 1 3.9196 -0.6996 4.8564 29 1 4.2017 -0.4949 3.1106 30 1 3.6125 0.8740 4.0838 31 1 1.2096 0.8640 4.9239 32 1 1.6391 -0.6442 5.7658 33 1 0.0367 0.5162 6.7898 34 1 1.8758 -1.7982 -1.2130 35 1 3.7639 0.6649 -1.3022 36 1 4.2151 -1.0914 -1.4152 37 1 3.0895 -1.3348 -3.5787 38 1 3.3968 0.4499 -3.7173 39 1 0.7965 -0.6299 -3.0772 40 1 1.3552 0.9901 -2.4733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692829814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:57 Heat of formation + Delta-G solvation = -18.474115 kcal Electronic energy + Delta-G solvation = -15987.365513 eV Core-core repulsion = 13608.139782 eV Total energy + Delta-G solvation = -2379.225731 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.28956 -36.77262 -33.88647 -32.35828 -29.22842 -27.08256 -26.36053 -25.18709 -23.99952 -22.75493 -20.10402 -19.72916 -19.25022 -16.72244 -15.66079 -15.31367 -15.15836 -14.22120 -13.74390 -13.58859 -13.39598 -12.74699 -12.51647 -12.47594 -12.39942 -11.91781 -11.63390 -11.31809 -11.24240 -11.07062 -10.95370 -10.69372 -10.64021 -10.48722 -10.31721 -10.11987 -9.98174 -9.92226 -9.36638 -8.53089 -8.33434 -7.63294 -6.35908 -4.05290 3.42965 3.44472 3.63193 4.54005 4.54569 4.62307 4.69047 4.82543 5.03507 5.30654 5.40802 5.49996 5.54028 5.61226 5.72104 5.73400 5.82894 5.88122 5.90867 5.95243 6.01213 6.08891 6.16900 6.26877 6.29303 6.31498 6.41525 6.49349 6.56300 6.68727 6.83636 6.86625 7.33393 7.44670 7.99892 8.17875 8.31344 8.44492 8.88459 9.67103 11.04736 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031066 B = 0.006201 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.086941 B = 4514.612974 C = 5246.970902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 H 0.076 0.924 4 C 0.066 3.934 5 N -0.685 5.685 6 C 0.094 3.906 7 H 0.028 0.972 8 C -0.136 4.136 9 C 0.006 3.994 10 C -0.603 4.603 11 H 0.045 0.955 12 C 0.018 3.982 13 N -0.911 5.911 14 Si 1.065 2.935 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.289 1.289 18 C -0.103 4.103 19 C -0.136 4.136 20 C -0.145 4.145 21 C -0.134 4.134 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.020 0.980 27 H 0.354 0.646 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.016 0.984 32 H 0.011 0.989 33 H 0.270 0.730 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.159 -1.190 -16.182 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 H 0.094 0.906 4 C -0.064 4.064 5 N -0.319 5.319 6 C -0.016 4.016 7 H 0.046 0.954 8 C -0.194 4.194 9 C -0.031 4.031 10 C -0.641 4.641 11 H 0.063 0.937 12 C -0.186 4.186 13 N -0.547 5.547 14 Si 0.894 3.106 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.216 1.216 18 C -0.122 4.122 19 C -0.173 4.173 20 C -0.182 4.182 21 C -0.172 4.172 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.177 0.823 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.029 0.971 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.167 -0.826 -15.530 16.388 hybrid contribution 0.966 -0.819 -0.629 1.414 sum 6.132 -1.645 -16.160 17.363 Atomic orbital electron populations 1.21823 0.95347 1.01625 1.01826 1.21130 0.95693 0.99769 0.93086 0.90607 1.21933 0.99579 0.94535 0.90352 1.60611 1.21541 1.49009 1.00776 1.21433 0.93997 0.94967 0.91185 0.95378 1.21806 0.96720 1.01407 0.99424 1.19407 0.94546 0.96717 0.92415 1.21981 0.95418 1.38217 1.08482 0.93700 1.25780 1.04476 0.95277 0.93114 1.70770 1.23746 1.33857 1.26287 0.83594 0.75225 0.75888 0.75906 1.20741 1.21407 1.21598 1.22557 0.95858 0.99771 0.94042 1.22946 0.96717 1.01834 0.95848 1.22817 0.97284 1.01440 0.96658 1.22904 0.96485 1.01076 0.96726 0.91802 0.93010 0.93153 0.92120 0.96192 0.82342 0.93496 0.94315 0.92747 0.96548 0.97103 0.91991 0.89679 0.90050 0.91900 0.90599 0.91844 0.91895 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.77 37.16 0.33 -1.79 16 2 C -0.08 -1.08 2.35 -90.62 -0.21 -1.29 16 3 H 0.08 1.10 7.94 -51.93 -0.41 0.68 16 4 C 0.07 1.09 4.94 -3.82 -0.02 1.07 16 5 N -0.68 -13.61 6.31 -106.72 -0.67 -14.28 16 6 C 0.09 2.03 2.59 -67.72 -0.18 1.85 16 7 H 0.03 0.63 7.80 -51.93 -0.40 0.23 16 8 C -0.14 -2.52 9.41 37.16 0.35 -2.17 16 9 C 0.01 0.17 3.88 -27.88 -0.11 0.06 16 10 C -0.60 -16.93 8.12 -34.44 -0.28 -17.21 16 11 H 0.04 1.24 7.49 -52.49 -0.39 0.85 16 12 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 13 N -0.91 -27.97 13.65 55.43 0.76 -27.22 16 14 Si 1.07 25.32 29.90 -169.99 -5.08 20.23 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 18 C -0.10 -1.20 3.13 -89.81 -0.28 -1.48 16 19 C -0.14 -1.44 7.63 -25.92 -0.20 -1.63 16 20 C -0.14 -1.35 8.08 -25.92 -0.21 -1.55 16 21 C -0.13 -1.36 6.68 -25.93 -0.17 -1.54 16 22 H 0.06 1.03 6.68 -51.93 -0.35 0.68 16 23 H 0.05 0.64 7.45 -51.93 -0.39 0.25 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.97 7.44 -51.93 -0.39 0.58 16 26 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 27 H 0.35 7.66 5.46 -39.29 -0.21 7.45 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.64 7.45 -51.93 -0.39 0.25 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 32 H 0.01 0.29 8.00 -51.93 -0.42 -0.12 16 33 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.82 8.10 -51.92 -0.42 0.40 16 LS Contribution 312.41 15.07 4.71 4.71 Total: -1.00 -29.29 312.41 -8.86 -38.15 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.49 Total: 3.68 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -1.08 Total: -25.28 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.08 Total: -41.50 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.29 -8.86 -38.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692829814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.677 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds