Wall clock time and date at job start Mon Mar 30 2020 02:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47354 * 2 1 4 4 C 1.52998 * 109.47440 * 120.00386 * 2 1 3 5 5 N 1.46908 * 109.47053 * 294.99951 * 4 2 1 6 6 C 1.46894 * 110.99955 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.47779 * 324.99869 * 6 5 4 8 8 C 1.52998 * 109.47018 * 85.00186 * 6 5 4 9 9 C 1.53002 * 109.47229 * 204.99899 * 6 5 4 10 10 C 1.50706 * 109.47153 * 64.99752 * 9 6 5 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 6 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 6 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 C 1.53006 * 109.47028 * 240.00262 * 2 1 3 19 19 C 1.53778 * 113.61337 * 157.49646 * 18 2 1 20 20 C 1.53778 * 87.07918 * 220.01609 * 19 18 2 21 21 C 1.53774 * 87.08114 * 25.43354 * 20 19 18 22 22 H 1.08999 * 109.47198 * 299.99624 * 1 2 3 23 23 H 1.08997 * 109.47190 * 59.99918 * 1 2 3 24 24 H 1.09002 * 109.46869 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47394 * 175.00078 * 4 2 1 26 26 H 1.09003 * 109.47056 * 54.99494 * 4 2 1 27 27 H 1.00904 * 110.99848 * 56.04776 * 5 4 2 28 28 H 1.09007 * 109.46878 * 179.97438 * 8 6 5 29 29 H 1.09001 * 109.46923 * 299.99707 * 8 6 5 30 30 H 1.08995 * 109.47190 * 60.00037 * 8 6 5 31 31 H 1.09004 * 109.47178 * 305.00542 * 9 6 5 32 32 H 1.08993 * 109.47411 * 185.00225 * 9 6 5 33 33 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 34 34 H 1.08999 * 112.84673 * 288.80373 * 18 2 1 35 35 H 1.09002 * 113.61730 * 334.57240 * 19 18 2 36 36 H 1.08999 * 113.61270 * 105.47041 * 19 18 2 37 37 H 1.08998 * 113.62059 * 270.88294 * 20 19 18 38 38 H 1.09006 * 113.68661 * 139.98876 * 20 19 18 39 39 H 1.08999 * 113.61792 * 220.01371 * 21 20 19 40 40 H 1.09010 * 113.61524 * 89.11259 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6514 0.0373 2.4457 6 6 2.1248 -0.6273 3.6671 7 1 2.0808 -1.7081 3.5332 8 6 3.5685 -0.2067 3.9497 9 6 1.2360 -0.2228 4.8450 10 6 -0.1604 -0.7444 4.6230 11 1 -0.3906 -1.3082 3.7311 12 6 -1.1438 -0.5017 5.5582 13 7 -0.8621 0.1804 6.6468 14 14 -2.8745 -1.1487 5.2833 15 1 -3.7357 -0.7613 6.4293 16 1 -3.4262 -0.5703 4.0317 17 1 -2.8373 -2.6289 5.1702 18 6 2.0400 -0.7212 -1.2493 19 6 3.4726 -0.3276 -1.6461 20 6 2.9921 -0.3572 -3.1066 21 6 1.5811 -0.0723 -2.5657 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1264 -0.7995 1.2055 26 1 1.6053 -1.7199 1.2951 27 1 0.6528 0.1791 2.4754 28 1 3.9196 -0.6996 4.8564 29 1 4.2017 -0.4949 3.1106 30 1 3.6125 0.8740 4.0838 31 1 1.2096 0.8640 4.9239 32 1 1.6391 -0.6442 5.7658 33 1 0.0367 0.5162 6.7898 34 1 1.8758 -1.7982 -1.2130 35 1 3.7639 0.6649 -1.3022 36 1 4.2151 -1.0914 -1.4152 37 1 3.0895 -1.3348 -3.5787 38 1 3.3968 0.4499 -3.7173 39 1 0.7965 -0.6299 -3.0772 40 1 1.3552 0.9901 -2.4733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692829814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:57 Heat of formation + Delta-G solvation = -34.853316 kcal Electronic energy + Delta-G solvation = -15988.075768 eV Core-core repulsion = 13608.139782 eV Total energy + Delta-G solvation = -2379.935987 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.24527 -38.35586 -35.57109 -34.13550 -30.75394 -28.98855 -27.46217 -26.05000 -25.43268 -24.64110 -21.40971 -21.22627 -20.21664 -18.90032 -17.05172 -16.54325 -16.18807 -15.72488 -15.54598 -15.17550 -14.78019 -14.18263 -14.16622 -13.55082 -13.31464 -13.26960 -13.11491 -12.98690 -12.74017 -12.55201 -12.49840 -12.38826 -11.97915 -11.77792 -11.73958 -11.46509 -11.29010 -10.91427 -10.76070 -10.65569 -10.55660 -9.25469 -8.68447 -6.38662 1.50583 1.58544 1.77583 2.55207 3.12859 3.36504 3.71531 3.80747 3.90542 4.01407 4.12675 4.20889 4.35934 4.42956 4.49778 4.58505 4.65327 4.79092 4.84845 4.87150 4.93487 4.93761 4.97915 5.05112 5.06344 5.12223 5.12860 5.18045 5.22826 5.33976 5.40781 5.45239 5.49916 5.71244 5.95762 6.16634 6.33706 6.53758 6.62628 7.42827 8.72333 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031066 B = 0.006201 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.086941 B = 4514.612974 C = 5246.970902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 H 0.071 0.929 4 C 0.068 3.932 5 N -0.686 5.686 6 C 0.099 3.901 7 H 0.019 0.981 8 C -0.127 4.127 9 C 0.010 3.990 10 C -0.609 4.609 11 H 0.047 0.953 12 C -0.035 4.035 13 N -0.937 5.937 14 Si 1.114 2.886 15 H -0.284 1.284 16 H -0.267 1.267 17 H -0.272 1.272 18 C -0.106 4.106 19 C -0.138 4.138 20 C -0.136 4.136 21 C -0.132 4.132 22 H 0.039 0.961 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.011 0.989 27 H 0.342 0.658 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.050 0.950 31 H -0.006 1.006 32 H -0.009 1.009 33 H 0.255 0.745 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.227 -1.802 -18.369 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 H 0.090 0.910 4 C -0.061 4.061 5 N -0.320 5.320 6 C -0.011 4.011 7 H 0.037 0.963 8 C -0.185 4.185 9 C -0.027 4.027 10 C -0.647 4.647 11 H 0.065 0.935 12 C -0.233 4.233 13 N -0.574 5.574 14 Si 0.935 3.065 15 H -0.209 1.209 16 H -0.192 1.192 17 H -0.198 1.198 18 C -0.125 4.125 19 C -0.175 4.175 20 C -0.174 4.174 21 C -0.169 4.169 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.029 0.971 27 H 0.163 0.837 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.012 0.988 32 H 0.009 0.991 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.271 -1.441 -17.740 18.562 hybrid contribution 0.990 -0.624 0.049 1.171 sum 6.261 -2.065 -17.691 18.880 Atomic orbital electron populations 1.21800 0.95645 1.01366 1.01591 1.21061 0.95376 0.99466 0.92942 0.91035 1.22024 1.00107 0.93990 0.90012 1.60683 1.20581 1.49434 1.01277 1.21310 0.94978 0.94449 0.90344 0.96310 1.21713 0.94859 1.01186 1.00749 1.19319 0.94854 0.94938 0.93572 1.22301 0.96453 1.37628 1.08294 0.93505 1.27323 1.08703 0.94775 0.92485 1.70908 1.22994 1.35764 1.27727 0.82982 0.70623 0.76378 0.76524 1.20939 1.19208 1.19752 1.22553 0.96951 0.99538 0.93423 1.22958 0.95990 1.01698 0.96846 1.22792 0.96261 1.02345 0.95954 1.22900 0.97360 1.01006 0.95671 0.94196 0.91029 0.93398 0.91171 0.97064 0.83728 0.92906 0.91847 0.93091 0.98797 0.99125 0.93528 0.89751 0.90377 0.91624 0.89685 0.90854 0.91218 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 8.77 71.98 0.63 -3.38 16 2 C -0.07 -1.84 2.35 -10.79 -0.03 -1.86 16 3 H 0.07 1.97 7.94 -2.39 -0.02 1.95 16 4 C 0.07 2.17 4.94 86.30 0.43 2.60 16 5 N -0.69 -27.18 6.31 -491.56 -3.10 -30.28 16 6 C 0.10 4.29 2.59 44.92 0.12 4.40 16 7 H 0.02 0.85 7.80 -2.39 -0.02 0.83 16 8 C -0.13 -4.60 9.41 71.98 0.68 -3.92 16 9 C 0.01 0.56 3.88 29.85 0.12 0.67 16 10 C -0.61 -34.66 8.12 25.60 0.21 -34.45 16 11 H 0.05 2.60 7.49 -2.91 -0.02 2.58 16 12 C -0.04 -2.04 5.46 84.65 0.46 -1.58 16 13 N -0.94 -58.73 13.65 21.45 0.29 -58.44 16 14 Si 1.11 50.55 29.90 68.60 2.05 52.61 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 C -0.11 -2.22 3.13 -10.27 -0.03 -2.26 16 19 C -0.14 -2.57 7.63 31.12 0.24 -2.33 16 20 C -0.14 -2.13 8.08 31.12 0.25 -1.88 16 21 C -0.13 -2.33 6.68 31.12 0.21 -2.12 16 22 H 0.04 1.27 6.68 -2.39 -0.02 1.25 16 23 H 0.07 1.64 7.45 -2.39 -0.02 1.63 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 2.11 7.44 -2.39 -0.02 2.09 16 26 H 0.01 0.38 8.05 -2.39 -0.02 0.36 16 27 H 0.34 14.97 5.46 -89.69 -0.49 14.48 16 28 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.06 1.97 7.45 -2.39 -0.02 1.96 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H -0.01 -0.36 8.01 -2.39 -0.02 -0.38 16 32 H -0.01 -0.54 8.00 -2.39 -0.02 -0.56 16 33 H 0.26 16.28 7.22 -92.71 -0.67 15.61 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.52 7.96 -2.39 -0.02 1.50 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.43 8.10 -2.38 -0.02 1.41 16 Total: -1.00 -62.92 312.41 3.10 -59.81 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.58 Total: 22.41 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 3.28 Total: -46.12 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -2.81 Total: -88.71 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.05 Total: 52.61 kcal Total: -62.92 3.10 -59.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692829814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.961 kcal (2) G-P(sol) polarization free energy of solvation -62.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds