Wall clock time and date at job start Mon Mar 30 2020 02:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 N 1.46900 * 109.46619 * 294.99903 * 4 2 1 6 6 C 1.46907 * 110.99641 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46793 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.46739 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.46957 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00127 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00291 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99681 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46784 * 90.00027 * 13 11 9 15 15 H 1.48494 * 109.47308 * 210.00512 * 13 11 9 16 16 H 1.48501 * 109.46855 * 330.00524 * 13 11 9 17 17 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 18 18 C 1.53779 * 113.61807 * 157.49918 * 17 2 1 19 19 C 1.53775 * 87.08445 * 220.02120 * 18 17 2 20 20 C 1.53780 * 87.08291 * 25.43110 * 19 18 17 21 21 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 25 25 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 26 26 H 1.00900 * 111.00289 * 56.04740 * 5 4 2 27 27 H 1.08997 * 109.46942 * 299.99950 * 6 5 4 28 28 H 1.09003 * 109.47142 * 59.99974 * 6 5 4 29 29 H 1.08997 * 109.47631 * 299.99889 * 7 6 5 30 30 H 1.09003 * 109.47002 * 60.00251 * 7 6 5 31 31 H 1.08997 * 109.47189 * 300.00430 * 8 7 6 32 32 H 1.09003 * 109.46948 * 60.00488 * 8 7 6 33 33 H 0.97003 * 119.99962 * 179.97438 * 12 11 9 34 34 H 1.09006 * 112.85292 * 288.81039 * 17 2 1 35 35 H 1.09003 * 113.61460 * 334.56934 * 18 17 2 36 36 H 1.08997 * 113.61480 * 105.47119 * 18 17 2 37 37 H 1.09008 * 113.61327 * 270.88310 * 19 18 17 38 38 H 1.08999 * 113.69441 * 139.99189 * 19 18 17 39 39 H 1.08996 * 113.61725 * 220.02384 * 20 19 18 40 40 H 1.08991 * 113.69226 * 89.12796 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0374 2.4456 6 6 2.1248 -0.6272 3.6672 7 6 1.7024 0.1910 4.8892 8 6 2.1949 -0.5015 6.1616 9 6 1.7785 0.3039 7.3652 10 1 1.2182 1.2181 7.2357 11 6 2.1127 -0.1261 8.6318 12 7 1.7488 0.5766 9.6822 13 14 3.0812 -1.7077 8.8559 14 1 4.5347 -1.4037 8.8449 15 1 2.7158 -2.3324 10.1526 16 1 2.7629 -2.6441 7.7482 17 6 2.0400 -0.7213 -1.2492 18 6 3.4726 -0.3278 -1.6461 19 6 2.9922 -0.3574 -3.1066 20 6 1.5811 -0.0723 -2.5658 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6054 -1.7198 1.2951 25 1 3.1263 -0.7995 1.2055 26 1 0.6529 0.1793 2.4753 27 1 1.6904 -1.6249 3.7296 28 1 3.2117 -0.7051 3.6405 29 1 2.1372 1.1886 4.8265 30 1 0.6156 0.2693 4.9160 31 1 1.7599 -1.4990 6.2240 32 1 3.2818 -0.5802 6.1349 33 1 1.9836 0.2738 10.5733 34 1 1.8757 -1.7983 -1.2129 35 1 3.7640 0.6647 -1.3023 36 1 4.2151 -1.0917 -1.4152 37 1 3.0896 -1.3351 -3.5786 38 1 3.3970 0.4496 -3.7173 39 1 0.7966 -0.6299 -3.0772 40 1 1.3539 0.9896 -2.4731 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692905548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:30 Heat of formation + Delta-G solvation = -14.067929 kcal Electronic energy + Delta-G solvation = -15226.392836 eV Core-core repulsion = 12847.358172 eV Total energy + Delta-G solvation = -2379.034665 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.50535 -36.68305 -34.14846 -32.51453 -30.78661 -27.29157 -26.31482 -25.40933 -24.07255 -21.95596 -20.61787 -19.87019 -19.57082 -16.72364 -15.98150 -15.56920 -15.44610 -14.31383 -14.24226 -14.05792 -13.61164 -13.13769 -12.73064 -12.63757 -12.58882 -12.41003 -11.88349 -11.76579 -11.58768 -11.10516 -11.01348 -10.86755 -10.74966 -10.61296 -10.27966 -10.20328 -9.90183 -9.68614 -9.48867 -9.13322 -8.50469 -8.17430 -6.00832 -3.98363 3.33053 3.39949 3.44035 4.24388 4.40716 4.47682 4.48285 4.63261 4.68983 4.98578 5.14061 5.21303 5.33157 5.40556 5.50411 5.56119 5.58273 5.62337 5.67308 5.74129 5.77192 5.77803 5.85312 5.94885 6.03951 6.17876 6.19645 6.22262 6.40833 6.60091 6.62503 6.96338 7.28236 7.39301 7.48690 7.64312 7.84152 8.58843 9.04910 9.61950 11.12824 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.059824 B = 0.003810 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.930726 B = 7348.228916 C = 7596.977942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.079 0.921 4 C 0.064 3.936 5 N -0.692 5.692 6 C 0.056 3.944 7 C -0.100 4.100 8 C -0.013 4.013 9 C -0.518 4.518 10 H 0.072 0.928 11 C 0.064 3.936 12 N -0.905 5.905 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.266 1.266 17 C -0.104 4.104 18 C -0.137 4.137 19 C -0.145 4.145 20 C -0.135 4.135 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.024 0.976 25 H 0.069 0.931 26 H 0.337 0.663 27 H 0.022 0.978 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.013 0.987 32 H 0.011 0.989 33 H 0.262 0.738 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.434 -3.647 -24.285 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.098 0.902 4 C -0.066 4.066 5 N -0.323 5.323 6 C -0.072 4.072 7 C -0.138 4.138 8 C -0.051 4.051 9 C -0.556 4.556 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.545 5.545 13 Si 0.708 3.292 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.191 1.191 17 C -0.123 4.123 18 C -0.174 4.174 19 C -0.182 4.182 20 C -0.172 4.172 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.156 0.844 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.982 -3.224 -24.118 24.352 hybrid contribution -0.087 -1.617 0.378 1.662 sum 0.895 -4.840 -23.740 24.245 Atomic orbital electron populations 1.21830 0.95452 1.01485 1.01841 1.21160 0.95558 1.00106 0.93070 0.90241 1.21957 1.00471 0.94364 0.89785 1.60571 1.19583 1.50386 1.01769 1.22141 1.00057 0.95454 0.89575 1.21445 1.00187 0.99274 0.92844 1.19546 0.95864 0.96202 0.93488 1.21165 1.35549 1.09524 0.89394 0.91024 1.25046 0.95645 0.96938 0.96001 1.69920 1.47167 1.39100 0.98276 0.86760 0.80614 0.84350 0.77437 1.20291 1.21440 1.19102 1.22560 0.96156 0.99740 0.93875 1.22959 0.96544 1.02002 0.95929 1.22818 0.97113 1.01615 0.96695 1.22907 0.96648 1.01075 0.96577 0.92259 0.92637 0.93136 0.95830 0.91297 0.84399 0.95952 0.91606 0.91971 0.93101 0.96885 0.97064 0.92794 0.89602 0.89919 0.91740 0.90511 0.91693 0.91855 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.77 37.16 0.33 -1.08 16 2 C -0.08 -0.81 2.34 -90.62 -0.21 -1.02 16 3 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 4 C 0.06 0.77 5.14 -3.82 -0.02 0.75 16 5 N -0.69 -10.07 6.50 -113.77 -0.74 -10.80 16 6 C 0.06 0.96 5.68 -3.82 -0.02 0.94 16 7 C -0.10 -2.04 5.41 -26.73 -0.14 -2.19 16 8 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 9 C -0.52 -15.20 9.66 -34.44 -0.33 -15.54 16 10 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 11 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 12 N -0.91 -28.50 13.96 55.43 0.77 -27.73 16 13 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 17 C -0.10 -0.91 3.13 -89.81 -0.28 -1.19 16 18 C -0.14 -1.15 7.63 -25.92 -0.20 -1.35 16 19 C -0.14 -1.08 8.08 -25.92 -0.21 -1.29 16 20 C -0.13 -1.04 6.68 -25.92 -0.17 -1.21 16 21 H 0.06 0.59 6.68 -51.93 -0.35 0.25 16 22 H 0.05 0.47 7.45 -51.93 -0.39 0.08 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.34 4.65 6.98 -39.29 -0.27 4.38 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 32 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.73 7.96 -51.93 -0.41 0.31 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 LS Contribution 314.60 15.07 4.74 4.74 Total: -1.00 -30.46 314.60 -9.05 -39.51 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.68 Total: -1.46 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -1.48 Total: -21.77 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.03 Total: -38.53 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.46 -9.05 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692905548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.442 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds