Wall clock time and date at job start Mon Mar 30 2020 02:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 N 1.46900 * 109.46619 * 294.99903 * 4 2 1 6 6 C 1.46907 * 110.99641 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46793 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.46739 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.46957 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00127 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00291 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99681 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46784 * 90.00027 * 13 11 9 15 15 H 1.48494 * 109.47308 * 210.00512 * 13 11 9 16 16 H 1.48501 * 109.46855 * 330.00524 * 13 11 9 17 17 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 18 18 C 1.53779 * 113.61807 * 157.49918 * 17 2 1 19 19 C 1.53775 * 87.08445 * 220.02120 * 18 17 2 20 20 C 1.53780 * 87.08291 * 25.43110 * 19 18 17 21 21 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 25 25 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 26 26 H 1.00900 * 111.00289 * 56.04740 * 5 4 2 27 27 H 1.08997 * 109.46942 * 299.99950 * 6 5 4 28 28 H 1.09003 * 109.47142 * 59.99974 * 6 5 4 29 29 H 1.08997 * 109.47631 * 299.99889 * 7 6 5 30 30 H 1.09003 * 109.47002 * 60.00251 * 7 6 5 31 31 H 1.08997 * 109.47189 * 300.00430 * 8 7 6 32 32 H 1.09003 * 109.46948 * 60.00488 * 8 7 6 33 33 H 0.97003 * 119.99962 * 179.97438 * 12 11 9 34 34 H 1.09006 * 112.85292 * 288.81039 * 17 2 1 35 35 H 1.09003 * 113.61460 * 334.56934 * 18 17 2 36 36 H 1.08997 * 113.61480 * 105.47119 * 18 17 2 37 37 H 1.09008 * 113.61327 * 270.88310 * 19 18 17 38 38 H 1.08999 * 113.69441 * 139.99189 * 19 18 17 39 39 H 1.08996 * 113.61725 * 220.02384 * 20 19 18 40 40 H 1.08991 * 113.69226 * 89.12796 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0374 2.4456 6 6 2.1248 -0.6272 3.6672 7 6 1.7024 0.1910 4.8892 8 6 2.1949 -0.5015 6.1616 9 6 1.7785 0.3039 7.3652 10 1 1.2182 1.2181 7.2357 11 6 2.1127 -0.1261 8.6318 12 7 1.7488 0.5766 9.6822 13 14 3.0812 -1.7077 8.8559 14 1 4.5347 -1.4037 8.8449 15 1 2.7158 -2.3324 10.1526 16 1 2.7629 -2.6441 7.7482 17 6 2.0400 -0.7213 -1.2492 18 6 3.4726 -0.3278 -1.6461 19 6 2.9922 -0.3574 -3.1066 20 6 1.5811 -0.0723 -2.5658 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6054 -1.7198 1.2951 25 1 3.1263 -0.7995 1.2055 26 1 0.6529 0.1793 2.4753 27 1 1.6904 -1.6249 3.7296 28 1 3.2117 -0.7051 3.6405 29 1 2.1372 1.1886 4.8265 30 1 0.6156 0.2693 4.9160 31 1 1.7599 -1.4990 6.2240 32 1 3.2818 -0.5802 6.1349 33 1 1.9836 0.2738 10.5733 34 1 1.8757 -1.7983 -1.2129 35 1 3.7640 0.6647 -1.3023 36 1 4.2151 -1.0917 -1.4152 37 1 3.0896 -1.3351 -3.5786 38 1 3.3970 0.4496 -3.7173 39 1 0.7966 -0.6299 -3.0772 40 1 1.3539 0.9896 -2.4731 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692905548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:30 Heat of formation + Delta-G solvation = -32.116789 kcal Electronic energy + Delta-G solvation = -15227.175494 eV Core-core repulsion = 12847.358172 eV Total energy + Delta-G solvation = -2379.817322 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.20979 -37.87063 -35.76770 -34.22264 -32.35225 -28.74995 -27.32623 -26.05354 -25.26908 -23.49988 -22.00274 -21.09463 -20.24264 -18.91260 -17.12389 -16.52607 -16.29115 -16.11873 -15.60735 -15.17370 -14.76439 -14.53049 -14.26591 -13.81662 -13.46547 -13.34616 -13.24048 -13.03992 -12.60261 -12.55389 -12.46258 -11.93315 -11.80891 -11.75065 -11.57753 -11.45924 -11.32196 -11.27895 -10.91025 -10.76940 -10.75637 -9.33737 -8.29900 -6.34391 1.35766 1.37753 1.50048 2.36263 3.05232 3.22279 3.71184 3.80855 3.90403 4.01734 4.17040 4.18204 4.32361 4.43398 4.44920 4.65050 4.68512 4.76640 4.85790 4.88750 4.93384 4.94285 4.96854 4.99871 5.08532 5.11540 5.13240 5.18461 5.32127 5.42974 5.49189 5.51523 5.60485 5.65810 5.71883 6.12716 6.29498 6.49978 6.73938 7.30263 8.87236 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.059824 B = 0.003810 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.930726 B = 7348.228916 C = 7596.977942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 H 0.069 0.931 4 C 0.065 3.935 5 N -0.698 5.698 6 C 0.069 3.931 7 C -0.091 4.091 8 C -0.010 4.010 9 C -0.535 4.535 10 H 0.029 0.971 11 C 0.001 3.999 12 N -0.953 5.953 13 Si 0.955 3.045 14 H -0.266 1.266 15 H -0.283 1.283 16 H -0.246 1.246 17 C -0.104 4.104 18 C -0.141 4.141 19 C -0.141 4.141 20 C -0.132 4.132 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.342 0.658 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.020 0.980 32 H 0.019 0.981 33 H 0.267 0.733 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.144 -5.475 -26.061 26.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.092 4.092 3 H 0.087 0.913 4 C -0.063 4.063 5 N -0.330 5.330 6 C -0.060 4.060 7 C -0.129 4.129 8 C -0.048 4.048 9 C -0.573 4.573 10 H 0.047 0.953 11 C -0.196 4.196 12 N -0.594 5.594 13 Si 0.778 3.222 14 H -0.191 1.191 15 H -0.209 1.209 16 H -0.169 1.169 17 C -0.123 4.123 18 C -0.179 4.179 19 C -0.178 4.178 20 C -0.169 4.169 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.084 0.916 26 H 0.161 0.839 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.685 -5.045 -25.925 26.465 hybrid contribution -0.363 -0.941 0.929 1.371 sum 1.322 -5.986 -24.996 25.736 Atomic orbital electron populations 1.21814 0.94903 1.01735 1.01973 1.21085 0.95949 0.99406 0.92773 0.91265 1.22005 1.00402 0.94521 0.89421 1.60517 1.20016 1.50716 1.01707 1.21884 1.00194 0.94981 0.88955 1.21275 0.99714 0.98845 0.93090 1.19491 0.96260 0.95902 0.93140 1.21528 1.35169 1.08836 0.91764 0.95257 1.26087 0.96853 1.01176 0.95452 1.70078 1.48821 1.41478 0.99042 0.85583 0.79092 0.79404 0.78100 1.19054 1.20856 1.16939 1.22550 0.96401 0.99756 0.93554 1.22975 0.96413 1.01643 0.96824 1.22818 0.96672 1.02236 0.96102 1.22893 0.97095 1.01032 0.95886 0.93087 0.91582 0.92792 0.95380 0.91557 0.83911 0.95266 0.91358 0.93308 0.93539 0.96194 0.96274 0.92457 0.89344 0.90556 0.91751 0.89762 0.91225 0.91121 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.77 71.98 0.63 -1.89 16 2 C -0.07 -1.36 2.34 -10.79 -0.03 -1.38 16 3 H 0.07 1.44 7.94 -2.39 -0.02 1.42 16 4 C 0.07 1.47 5.14 86.30 0.44 1.92 16 5 N -0.70 -19.33 6.50 -513.87 -3.34 -22.67 16 6 C 0.07 2.22 5.68 86.30 0.49 2.71 16 7 C -0.09 -3.70 5.41 30.60 0.17 -3.54 16 8 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 9 C -0.53 -31.97 9.66 25.60 0.25 -31.73 16 10 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 11 C 0.00 0.04 5.47 84.66 0.46 0.50 16 12 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 13 Si 0.96 45.08 27.47 68.60 1.88 46.96 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 17 C -0.10 -1.60 3.13 -10.27 -0.03 -1.63 16 18 C -0.14 -2.15 7.63 31.12 0.24 -1.91 16 19 C -0.14 -1.80 8.08 31.12 0.25 -1.55 16 20 C -0.13 -1.75 6.68 31.12 0.21 -1.55 16 21 H 0.05 0.95 6.68 -2.39 -0.02 0.94 16 22 H 0.07 0.99 7.45 -2.39 -0.02 0.97 16 23 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.34 9.01 6.98 -89.69 -0.63 8.38 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 32 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 33 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 34 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.08 1.26 7.96 -2.39 -0.02 1.24 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 Total: -1.00 -65.42 314.60 2.33 -63.09 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.29 Total: 13.98 kcal Atomic # 6 Polarization: -43.61 SS G_CDS: 3.20 Total: -40.41 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -3.04 Total: -83.62 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -65.42 2.33 -63.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692905548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.971 kcal (2) G-P(sol) polarization free energy of solvation -65.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds