Wall clock time and date at job start Mon Mar 30 2020 02:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47251 * 2 1 4 4 C 1.53000 * 109.46847 * 239.99948 * 2 1 3 5 5 C 1.50702 * 109.47225 * 68.44773 * 4 2 1 6 6 H 1.07995 * 119.99726 * 5.42216 * 5 4 2 7 7 C 1.37873 * 119.99985 * 185.42320 * 5 4 2 8 8 N 1.31514 * 120.00083 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99890 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46864 * 59.99919 * 9 7 5 11 11 H 1.48500 * 109.46958 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46911 * 300.00096 * 9 7 5 13 13 N 1.46906 * 109.47187 * 120.00025 * 2 1 3 14 14 C 1.46903 * 110.99702 * 164.25551 * 13 2 1 15 15 C 1.46894 * 111.00064 * 288.20809 * 13 2 1 16 16 H 1.09000 * 112.85219 * 301.82785 * 15 13 2 17 17 C 1.53792 * 113.61252 * 73.01505 * 15 13 2 18 18 C 1.53785 * 87.08020 * 139.98174 * 17 15 13 19 19 C 1.53780 * 113.61556 * 170.51253 * 15 13 2 20 20 C 1.52996 * 113.61352 * 334.56649 * 19 15 13 21 21 C 1.52995 * 113.61512 * 105.47230 * 19 15 13 22 22 H 1.09007 * 109.47388 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47192 * 299.99444 * 1 2 3 24 24 H 1.08995 * 109.47681 * 59.99968 * 1 2 3 25 25 H 1.09001 * 109.47217 * 188.44377 * 4 2 1 26 26 H 1.08995 * 109.47242 * 308.44557 * 4 2 1 27 27 H 0.97003 * 119.99740 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.46841 * 176.31240 * 14 13 2 29 29 H 1.08997 * 109.47406 * 296.31300 * 14 13 2 30 30 H 1.09006 * 109.46919 * 56.31374 * 14 13 2 31 31 H 1.08994 * 113.61171 * 254.52920 * 17 15 13 32 32 H 1.09000 * 113.61299 * 25.43412 * 17 15 13 33 33 H 1.09000 * 113.61456 * 89.11388 * 18 17 15 34 34 H 1.08993 * 113.61287 * 220.02313 * 18 17 15 35 35 H 1.09003 * 109.46945 * 68.73459 * 20 19 15 36 36 H 1.09003 * 109.47273 * 188.72489 * 20 19 15 37 37 H 1.08994 * 109.47524 * 308.73352 * 20 19 15 38 38 H 1.09003 * 109.47281 * 59.99974 * 21 19 15 39 39 H 1.09002 * 109.47322 * 180.02562 * 21 19 15 40 40 H 1.09001 * 109.47029 * 300.00289 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.7152 0.0994 -2.4708 6 1 1.2763 1.0800 -2.3615 7 6 1.9785 -0.4019 -3.7280 8 7 2.5134 -1.5959 -3.8611 9 14 1.5754 0.6151 -5.2422 10 1 2.3346 1.8906 -5.1983 11 1 1.9523 -0.1430 -6.4623 12 1 0.1195 0.9062 -5.2697 13 7 2.0197 -0.6925 1.1995 14 6 3.4397 -1.0429 1.0621 15 6 1.7912 0.1161 2.4044 16 1 2.2689 1.0945 2.3544 17 6 0.3168 0.1719 2.8383 18 6 0.8204 0.0567 4.2867 19 6 2.0665 -0.6399 3.7149 20 6 1.9172 -2.1574 3.5901 21 6 3.3698 -0.2240 4.4001 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 3.1194 -0.8538 -1.1771 26 1 1.5586 -1.6960 -1.3279 27 1 2.6983 -1.9487 -4.7456 28 1 3.7934 -1.4955 1.9885 29 1 3.5616 -1.7508 0.2423 30 1 4.0176 -0.1425 0.8537 31 1 -0.1672 1.1235 2.6186 32 1 -0.2679 -0.6873 2.5097 33 1 1.0333 1.0188 4.7528 34 1 0.2064 -0.5912 4.9122 35 1 2.7184 -2.5511 2.9647 36 1 1.9729 -2.6106 4.5799 37 1 0.9540 -2.3917 3.1369 38 1 3.3314 0.8387 4.6395 39 1 3.4976 -0.7990 5.3172 40 1 4.2090 -0.4157 3.7315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694282573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:42 Heat of formation + Delta-G solvation = 13.660464 kcal Electronic energy + Delta-G solvation = -16663.257018 eV Core-core repulsion = 14285.424746 eV Total energy + Delta-G solvation = -2377.832271 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.99303 -36.12993 -32.76558 -31.11537 -30.16801 -27.33431 -27.22455 -25.29236 -23.88235 -22.47444 -21.97144 -18.87893 -17.93917 -16.45937 -15.26905 -15.01588 -14.72394 -14.36293 -14.00950 -13.25313 -13.17508 -12.82226 -12.43177 -12.15806 -11.93408 -11.81833 -11.53363 -11.39988 -11.22713 -10.99949 -10.88098 -10.77582 -10.70648 -10.42178 -10.20020 -9.88983 -9.77666 -9.68627 -9.04949 -8.92210 -8.29756 -7.58306 -5.96702 -3.97878 3.34573 3.39030 3.41382 4.43918 4.60317 4.70729 4.77606 5.09394 5.10777 5.38917 5.41463 5.66057 5.72497 5.78308 5.85713 5.91248 5.96068 6.02685 6.09338 6.13474 6.16638 6.20600 6.26804 6.40613 6.44905 6.49502 6.59274 6.72401 6.78453 6.84732 7.02786 7.20157 7.63285 7.73874 7.90492 7.92820 8.12586 8.49279 9.08320 9.64859 11.14636 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048026 B = 0.006427 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.879765 B = 4355.523384 C = 4608.260673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.024 0.976 4 C 0.025 3.975 5 C -0.516 4.516 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.524 5.524 14 C 0.024 3.976 15 C 0.064 3.936 16 H 0.054 0.946 17 C -0.123 4.123 18 C -0.138 4.138 19 C -0.077 4.077 20 C -0.114 4.114 21 C -0.138 4.138 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.018 0.982 26 H 0.027 0.973 27 H 0.260 0.740 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 1.823 15.067 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.021 4.021 3 H 0.042 0.958 4 C -0.012 4.012 5 C -0.555 4.555 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.248 5.248 14 C -0.124 4.124 15 C -0.045 4.045 16 H 0.071 0.929 17 C -0.161 4.161 18 C -0.176 4.176 19 C -0.077 4.077 20 C -0.171 4.171 21 C -0.195 4.195 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.036 0.964 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.384 1.257 14.966 15.083 hybrid contribution 0.347 1.386 -1.102 1.804 sum -1.037 2.643 13.865 14.152 Atomic orbital electron populations 1.21911 0.95537 1.01369 1.00360 1.21796 0.95125 0.95165 0.90036 0.95823 1.19305 0.96234 0.96142 0.89492 1.21169 1.40995 1.02280 0.91022 0.92911 1.24978 0.95380 0.94976 0.98963 1.69956 1.43660 1.16642 1.23158 0.86697 0.78818 0.80233 0.82476 1.20382 1.21319 1.20260 1.62312 1.17084 1.43089 1.02306 1.22447 0.88357 1.00001 1.01565 1.23155 0.96539 0.94651 0.90139 0.92870 1.23024 0.96411 1.01944 0.94684 1.22986 0.97573 1.00109 0.96904 1.21869 0.94297 0.96261 0.95296 1.21448 1.03181 0.92491 1.00008 1.21800 0.97169 1.00540 0.99997 0.93053 0.93832 0.92272 0.96402 0.95505 0.93019 0.92441 0.90284 0.96543 0.92002 0.89022 0.90788 0.91599 0.91765 0.93930 0.91923 0.93042 0.92912 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.40 37.16 0.31 -2.33 16 2 C 0.09 1.83 2.14 -67.71 -0.14 1.69 16 3 H 0.02 0.53 8.04 -51.93 -0.42 0.12 16 4 C 0.03 0.66 3.94 -27.88 -0.11 0.55 16 5 C -0.52 -14.59 8.34 -34.44 -0.29 -14.87 16 6 H 0.05 1.46 7.49 -52.49 -0.39 1.07 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.52 -9.57 3.91 -225.93 -0.88 -10.45 16 14 C 0.02 0.43 8.00 60.07 0.48 0.91 16 15 C 0.06 0.99 2.57 -66.90 -0.17 0.81 16 16 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 17 C -0.12 -1.69 4.94 -25.91 -0.13 -1.82 16 18 C -0.14 -1.61 7.22 -25.91 -0.19 -1.80 16 19 C -0.08 -0.98 0.76 -153.70 -0.12 -1.10 16 20 C -0.11 -1.48 8.22 37.16 0.31 -1.17 16 21 C -0.14 -1.58 9.12 37.16 0.34 -1.24 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.04 0.73 4.61 -51.93 -0.24 0.49 16 24 H 0.06 1.23 7.32 -51.93 -0.38 0.85 16 25 H 0.02 0.49 5.87 -51.93 -0.30 0.18 16 26 H 0.03 0.76 8.13 -51.93 -0.42 0.33 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.06 0.88 4.50 -51.93 -0.23 0.65 16 29 H 0.08 1.58 6.30 -51.93 -0.33 1.25 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.83 7.39 -51.93 -0.38 0.44 16 32 H 0.09 1.34 7.01 -51.93 -0.36 0.97 16 33 H 0.07 0.80 7.96 -51.93 -0.41 0.38 16 34 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.06 0.89 5.92 -51.93 -0.31 0.58 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 38 H 0.05 0.56 7.94 -51.93 -0.41 0.14 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.67 7.08 -51.93 -0.37 0.30 16 LS Contribution 297.09 15.07 4.48 4.48 Total: -1.00 -29.13 297.09 -7.51 -36.63 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -7.01 Total: -2.43 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 0.20 Total: -18.79 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.15 Total: -36.69 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.13 -7.51 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694282573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.295 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds