Wall clock time and date at job start Mon Mar 30 2020 02:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47251 * 2 1 4 4 C 1.53000 * 109.46847 * 239.99948 * 2 1 3 5 5 C 1.50702 * 109.47225 * 68.44773 * 4 2 1 6 6 H 1.07995 * 119.99726 * 5.42216 * 5 4 2 7 7 C 1.37873 * 119.99985 * 185.42320 * 5 4 2 8 8 N 1.31514 * 120.00083 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99890 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46864 * 59.99919 * 9 7 5 11 11 H 1.48500 * 109.46958 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46911 * 300.00096 * 9 7 5 13 13 N 1.46906 * 109.47187 * 120.00025 * 2 1 3 14 14 C 1.46903 * 110.99702 * 164.25551 * 13 2 1 15 15 C 1.46894 * 111.00064 * 288.20809 * 13 2 1 16 16 H 1.09000 * 112.85219 * 301.82785 * 15 13 2 17 17 C 1.53792 * 113.61252 * 73.01505 * 15 13 2 18 18 C 1.53785 * 87.08020 * 139.98174 * 17 15 13 19 19 C 1.53780 * 113.61556 * 170.51253 * 15 13 2 20 20 C 1.52996 * 113.61352 * 334.56649 * 19 15 13 21 21 C 1.52995 * 113.61512 * 105.47230 * 19 15 13 22 22 H 1.09007 * 109.47388 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47192 * 299.99444 * 1 2 3 24 24 H 1.08995 * 109.47681 * 59.99968 * 1 2 3 25 25 H 1.09001 * 109.47217 * 188.44377 * 4 2 1 26 26 H 1.08995 * 109.47242 * 308.44557 * 4 2 1 27 27 H 0.97003 * 119.99740 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.46841 * 176.31240 * 14 13 2 29 29 H 1.08997 * 109.47406 * 296.31300 * 14 13 2 30 30 H 1.09006 * 109.46919 * 56.31374 * 14 13 2 31 31 H 1.08994 * 113.61171 * 254.52920 * 17 15 13 32 32 H 1.09000 * 113.61299 * 25.43412 * 17 15 13 33 33 H 1.09000 * 113.61456 * 89.11388 * 18 17 15 34 34 H 1.08993 * 113.61287 * 220.02313 * 18 17 15 35 35 H 1.09003 * 109.46945 * 68.73459 * 20 19 15 36 36 H 1.09003 * 109.47273 * 188.72489 * 20 19 15 37 37 H 1.08994 * 109.47524 * 308.73352 * 20 19 15 38 38 H 1.09003 * 109.47281 * 59.99974 * 21 19 15 39 39 H 1.09002 * 109.47322 * 180.02562 * 21 19 15 40 40 H 1.09001 * 109.47029 * 300.00289 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.7152 0.0994 -2.4708 6 1 1.2763 1.0800 -2.3615 7 6 1.9785 -0.4019 -3.7280 8 7 2.5134 -1.5959 -3.8611 9 14 1.5754 0.6151 -5.2422 10 1 2.3346 1.8906 -5.1983 11 1 1.9523 -0.1430 -6.4623 12 1 0.1195 0.9062 -5.2697 13 7 2.0197 -0.6925 1.1995 14 6 3.4397 -1.0429 1.0621 15 6 1.7912 0.1161 2.4044 16 1 2.2689 1.0945 2.3544 17 6 0.3168 0.1719 2.8383 18 6 0.8204 0.0567 4.2867 19 6 2.0665 -0.6399 3.7149 20 6 1.9172 -2.1574 3.5901 21 6 3.3698 -0.2240 4.4001 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 3.1194 -0.8538 -1.1771 26 1 1.5586 -1.6960 -1.3279 27 1 2.6983 -1.9487 -4.7456 28 1 3.7934 -1.4955 1.9885 29 1 3.5616 -1.7508 0.2423 30 1 4.0176 -0.1425 0.8537 31 1 -0.1672 1.1235 2.6186 32 1 -0.2679 -0.6873 2.5097 33 1 1.0333 1.0188 4.7528 34 1 0.2064 -0.5912 4.9122 35 1 2.7184 -2.5511 2.9647 36 1 1.9729 -2.6106 4.5799 37 1 0.9540 -2.3917 3.1369 38 1 3.3314 0.8387 4.6395 39 1 3.4976 -0.7990 5.3172 40 1 4.2090 -0.4157 3.7315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694282573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:41 Heat of formation + Delta-G solvation = -3.096041 kcal Electronic energy + Delta-G solvation = -16663.983634 eV Core-core repulsion = 14285.424746 eV Total energy + Delta-G solvation = -2378.558888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18582 -37.71213 -34.84453 -32.55075 -31.57841 -29.14707 -28.21065 -26.80023 -25.59254 -24.05982 -23.11885 -20.62680 -19.15972 -18.46898 -16.66596 -16.58034 -16.14917 -16.03164 -15.45305 -14.59447 -14.49567 -14.18263 -14.02131 -13.67891 -13.43178 -13.03674 -12.96097 -12.88002 -12.80942 -12.54078 -12.37864 -12.36622 -12.17415 -11.92420 -11.77060 -11.43061 -11.29648 -11.11987 -10.78171 -10.54180 -10.47226 -9.11118 -8.18570 -6.28315 1.38556 1.41418 1.49245 2.40180 3.14191 3.17214 3.63181 3.71971 3.98726 4.00498 4.29532 4.37946 4.44102 4.60809 4.64411 4.68458 4.71243 4.79232 4.89625 4.90604 5.00028 5.02916 5.08888 5.11817 5.13311 5.21872 5.29328 5.34273 5.41805 5.44789 5.48848 5.66698 5.71038 5.76636 5.79663 6.11582 6.41548 6.48708 6.87555 7.39471 8.93131 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048026 B = 0.006427 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.879765 B = 4355.523384 C = 4608.260673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.096 3.904 3 H 0.012 0.988 4 C 0.036 3.964 5 C -0.535 4.535 6 H 0.056 0.944 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.267 1.267 13 N -0.524 5.524 14 C 0.032 3.968 15 C 0.049 3.951 16 H 0.048 0.952 17 C -0.126 4.126 18 C -0.121 4.121 19 C -0.073 4.073 20 C -0.113 4.113 21 C -0.136 4.136 22 H 0.043 0.957 23 H 0.075 0.925 24 H 0.043 0.957 25 H -0.003 1.003 26 H -0.007 1.007 27 H 0.263 0.737 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.007 0.993 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 2.962 16.634 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.012 4.012 3 H 0.030 0.970 4 C -0.002 4.002 5 C -0.573 4.573 6 H 0.074 0.926 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.786 3.214 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.191 1.191 13 N -0.249 5.249 14 C -0.116 4.116 15 C -0.059 4.059 16 H 0.066 0.934 17 C -0.164 4.164 18 C -0.159 4.159 19 C -0.073 4.073 20 C -0.170 4.170 21 C -0.193 4.193 22 H 0.062 0.938 23 H 0.094 0.906 24 H 0.062 0.938 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.087 2.403 16.554 16.857 hybrid contribution 0.597 0.995 -1.545 1.932 sum -1.490 3.398 15.009 15.461 Atomic orbital electron populations 1.21817 0.94082 1.01118 1.01182 1.21522 0.96211 0.93870 0.89602 0.96965 1.19124 0.94639 0.94779 0.91631 1.21554 1.40946 1.02651 0.92164 0.92577 1.25906 0.95060 0.96137 1.02452 1.70099 1.44672 1.18425 1.24045 0.85562 0.79068 0.78639 0.78153 1.19406 1.20817 1.19140 1.62306 1.16966 1.43357 1.02228 1.22354 0.88457 0.98995 1.01835 1.23406 0.98313 0.94512 0.89692 0.93411 1.23022 0.95040 1.01861 0.96432 1.22921 0.96357 1.00972 0.95602 1.21882 0.95940 0.95890 0.93606 1.21426 1.01862 0.92800 1.00899 1.21785 0.95801 1.01383 1.00337 0.93802 0.90610 0.93780 0.98523 0.98865 0.92864 0.89602 0.93289 0.97410 0.91422 0.89899 0.89217 0.90056 0.93204 0.91664 0.93204 0.92231 0.91155 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 8.40 71.98 0.60 -4.30 16 2 C 0.10 4.18 2.14 44.91 0.10 4.28 16 3 H 0.01 0.57 8.04 -2.39 -0.02 0.55 16 4 C 0.04 1.93 3.94 29.85 0.12 2.05 16 5 C -0.53 -30.96 8.34 25.60 0.21 -30.75 16 6 H 0.06 3.14 7.49 -2.91 -0.02 3.12 16 7 C 0.00 0.13 5.46 84.65 0.46 0.59 16 8 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 9 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.52 -19.33 3.91 -868.70 -3.40 -22.73 16 14 C 0.03 1.16 8.00 127.69 1.02 2.19 16 15 C 0.05 1.44 2.57 45.45 0.12 1.56 16 16 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 17 C -0.13 -3.18 4.94 31.13 0.15 -3.02 16 18 C -0.12 -2.40 7.22 31.12 0.22 -2.17 16 19 C -0.07 -1.68 0.76 -51.66 -0.04 -1.72 16 20 C -0.11 -2.70 8.22 71.98 0.59 -2.11 16 21 C -0.14 -2.71 9.12 71.98 0.66 -2.06 16 22 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 23 H 0.08 2.46 4.61 -2.39 -0.01 2.45 16 24 H 0.04 1.84 7.32 -2.39 -0.02 1.82 16 25 H 0.00 -0.20 5.87 -2.39 -0.01 -0.21 16 26 H -0.01 -0.43 8.13 -2.39 -0.02 -0.45 16 27 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.09 2.63 4.50 -2.39 -0.01 2.62 16 29 H 0.05 2.07 6.30 -2.39 -0.02 2.06 16 30 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.07 1.63 7.39 -2.39 -0.02 1.61 16 32 H 0.08 2.27 7.01 -2.39 -0.02 2.25 16 33 H 0.09 1.55 7.96 -2.39 -0.02 1.53 16 34 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 35 H 0.05 1.32 5.92 -2.39 -0.01 1.31 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.32 7.30 -2.39 -0.02 1.30 16 38 H 0.06 1.10 7.94 -2.39 -0.02 1.08 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.01 7.08 -2.39 -0.02 1.00 16 Total: -1.00 -63.77 297.09 4.12 -59.66 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.98 Total: 8.90 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 4.22 Total: -35.47 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -3.11 Total: -80.13 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -63.77 4.12 -59.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694282573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.560 kcal (2) G-P(sol) polarization free energy of solvation -63.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds