Wall clock time and date at job start Mon Mar 30 2020 02:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46936 * 2 1 4 4 C 1.53003 * 109.47407 * 119.99607 * 2 1 3 5 5 C 1.50692 * 109.47510 * 185.00046 * 4 2 1 6 6 H 1.08011 * 120.00074 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00541 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99341 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00584 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47109 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47436 * 119.99845 * 9 7 5 12 12 H 1.48497 * 109.47283 * 240.00255 * 9 7 5 13 13 N 1.46900 * 109.47280 * 240.00070 * 2 1 3 14 14 C 1.46904 * 110.99718 * 306.04232 * 13 2 1 15 15 C 1.46889 * 111.00157 * 69.99888 * 13 2 1 16 16 H 1.08997 * 112.85211 * 314.78794 * 15 13 2 17 17 C 1.53788 * 113.61483 * 183.59485 * 15 13 2 18 18 C 1.53779 * 87.08266 * 220.01753 * 17 15 13 19 19 C 1.53781 * 87.08196 * 25.43099 * 18 17 15 20 20 C 1.52998 * 113.61800 * 220.02188 * 19 18 17 21 21 C 1.53003 * 113.61507 * 89.11672 * 19 18 17 22 22 H 1.08999 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47119 * 300.00283 * 1 2 3 24 24 H 1.09002 * 109.47183 * 60.00043 * 1 2 3 25 25 H 1.08995 * 109.46880 * 305.00369 * 4 2 1 26 26 H 1.09003 * 109.46770 * 65.00220 * 4 2 1 27 27 H 0.96999 * 119.99850 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.46657 * 66.48566 * 14 13 2 29 29 H 1.09001 * 109.47038 * 186.48464 * 14 13 2 30 30 H 1.09002 * 109.47350 * 306.48681 * 14 13 2 31 31 H 1.09002 * 113.61234 * 334.56746 * 17 15 13 32 32 H 1.09007 * 113.61423 * 105.38718 * 17 15 13 33 33 H 1.08996 * 113.61936 * 139.98044 * 18 17 15 34 34 H 1.08998 * 113.61585 * 270.79956 * 18 17 15 35 35 H 1.08996 * 109.47840 * 157.49828 * 20 19 18 36 36 H 1.09005 * 109.46976 * 277.49618 * 20 19 18 37 37 H 1.09002 * 109.47003 * 37.49385 * 20 19 18 38 38 H 1.09001 * 109.46455 * 315.71097 * 21 19 18 39 39 H 1.08997 * 109.47056 * 75.71084 * 21 19 18 40 40 H 1.08999 * 109.47248 * 195.71554 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6148 1.3128 6 1 4.0790 -0.0854 0.5396 7 6 4.2305 -1.1934 2.3578 8 7 3.5764 -1.8376 3.2996 9 14 6.0920 -1.0609 2.4369 10 1 6.5837 -0.2907 1.2663 11 1 6.4861 -0.3657 3.6885 12 1 6.6863 -2.4217 2.4184 13 7 2.0196 -0.6925 -1.1994 14 6 1.4343 -2.0355 -1.3077 15 6 1.7529 0.0972 -2.4090 16 1 0.7425 0.5052 -2.4338 17 6 2.1630 -0.6120 -3.7105 18 6 2.6715 0.7536 -4.2018 19 6 2.8456 1.1331 -2.7218 20 6 2.4339 2.5724 -2.4056 21 6 4.2179 0.7675 -2.1525 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6054 -0.2616 2.1369 26 1 1.7517 -1.7715 1.2056 27 1 4.0608 -2.2450 4.0346 28 1 0.3620 -1.9513 -1.4847 29 1 1.8988 -2.5684 -2.1374 30 1 1.6078 -2.5833 -0.3814 31 1 2.9540 -1.3496 -3.5752 32 1 1.3188 -0.9967 -4.2828 33 1 3.6110 0.6977 -4.7516 34 1 1.9132 1.3418 -4.7186 35 1 2.1984 2.6584 -1.3449 36 1 3.2540 3.2472 -2.6515 37 1 1.5563 2.8372 -2.9954 38 1 4.4892 -0.2375 -2.4759 39 1 4.9616 1.4783 -2.5125 40 1 4.1802 0.8010 -1.0637 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694282575.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:45 Heat of formation + Delta-G solvation = 11.058941 kcal Electronic energy + Delta-G solvation = -17020.471804 eV Core-core repulsion = 14642.526722 eV Total energy + Delta-G solvation = -2377.945082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.82246 -36.29157 -32.65931 -30.83205 -29.48383 -27.43690 -26.78556 -25.97258 -23.81867 -22.61222 -21.63290 -18.77471 -17.62351 -16.15639 -15.81025 -14.78778 -14.46968 -14.15955 -14.05393 -13.10590 -12.92121 -12.70657 -12.50106 -12.05970 -11.76763 -11.66576 -11.63529 -11.46578 -11.10432 -11.08444 -10.95542 -10.61356 -10.51442 -10.29687 -10.22168 -9.89174 -9.83955 -9.52173 -9.04296 -8.77472 -8.21699 -7.34081 -5.84762 -3.81715 3.40080 3.47800 3.52732 4.59295 4.66528 4.89101 4.93485 5.10678 5.22524 5.53008 5.63735 5.75629 5.82286 5.86082 5.91453 5.93982 6.03769 6.04219 6.09133 6.15714 6.18743 6.23120 6.34462 6.37705 6.47831 6.64519 6.67334 6.71069 6.77990 6.88686 7.10623 7.13118 7.62609 7.78891 8.02543 8.14371 8.19747 8.64784 9.25546 9.79636 11.27478 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026449 B = 0.009551 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.377299 B = 2930.989609 C = 3390.962168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.068 0.932 4 C 0.029 3.971 5 C -0.486 4.486 6 H 0.066 0.934 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.886 3.114 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.498 5.498 14 C 0.027 3.973 15 C 0.060 3.940 16 H 0.056 0.944 17 C -0.132 4.132 18 C -0.137 4.137 19 C -0.068 4.068 20 C -0.136 4.136 21 C -0.114 4.114 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.037 0.963 25 H 0.016 0.984 26 H 0.019 0.981 27 H 0.255 0.745 28 H 0.012 0.988 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.035 0.965 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 4.449 -12.521 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.086 0.914 4 C -0.008 4.008 5 C -0.524 4.524 6 H 0.084 0.916 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.220 5.220 14 C -0.121 4.121 15 C -0.049 4.049 16 H 0.074 0.926 17 C -0.169 4.169 18 C -0.175 4.175 19 C -0.069 4.069 20 C -0.194 4.194 21 C -0.171 4.171 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.231 4.298 -12.315 13.438 hybrid contribution 0.026 0.047 0.091 0.105 sum -3.206 4.345 -12.224 13.363 Atomic orbital electron populations 1.22515 1.00152 1.01212 1.00392 1.21901 0.89750 0.98447 0.92062 0.91351 1.19204 0.96396 0.95338 0.89823 1.21295 0.91794 1.32543 1.06802 0.91629 1.25009 0.97824 0.96054 0.96109 1.69980 1.34993 1.37202 1.12438 0.86626 0.86733 0.77529 0.77662 1.19678 1.21522 1.21436 1.62317 1.57455 1.01586 1.00661 1.22328 0.95457 0.91788 1.02559 1.23224 0.96153 0.95157 0.90397 0.92636 1.22952 1.00783 0.96853 0.96335 1.22944 1.00755 0.97323 0.96449 1.21821 0.96827 0.93913 0.94314 1.21763 1.00188 0.95738 1.01661 1.21442 0.92510 1.00017 1.03176 0.92902 0.92772 0.94352 0.96619 0.96315 0.93491 0.97006 0.92794 0.90353 0.89384 0.92555 0.91682 0.90954 0.92277 0.93031 0.93474 0.92592 0.94550 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.48 37.15 0.32 -2.93 16 2 C 0.09 1.76 2.25 -67.71 -0.15 1.61 16 3 H 0.07 1.44 7.05 -51.93 -0.37 1.07 16 4 C 0.03 0.74 4.37 -27.89 -0.12 0.62 16 5 C -0.49 -13.39 8.84 -34.44 -0.30 -13.69 16 6 H 0.07 1.78 5.61 -52.48 -0.29 1.48 16 7 C 0.05 1.40 5.46 -17.82 -0.10 1.31 16 8 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 N -0.50 -9.31 3.45 -225.93 -0.78 -10.09 16 14 C 0.03 0.48 8.29 60.07 0.50 0.98 16 15 C 0.06 0.94 2.52 -66.90 -0.17 0.77 16 16 H 0.06 0.88 6.42 -51.93 -0.33 0.55 16 17 C -0.13 -1.81 6.25 -25.92 -0.16 -1.97 16 18 C -0.14 -1.74 7.22 -25.92 -0.19 -1.93 16 19 C -0.07 -1.01 1.33 -153.69 -0.20 -1.22 16 20 C -0.14 -1.88 9.20 37.16 0.34 -1.53 16 21 C -0.11 -1.93 8.36 37.16 0.31 -1.61 16 22 H 0.05 0.93 6.47 -51.93 -0.34 0.59 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.61 6.56 -51.93 -0.34 0.27 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.50 6.22 -51.93 -0.32 0.18 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.01 0.19 6.62 -51.93 -0.34 -0.15 16 29 H 0.05 0.87 6.94 -51.93 -0.36 0.51 16 30 H 0.08 1.59 6.11 -51.93 -0.32 1.27 16 31 H 0.09 1.29 7.14 -51.93 -0.37 0.92 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.07 0.83 7.97 -51.93 -0.41 0.42 16 35 H 0.06 0.89 7.14 -51.93 -0.37 0.51 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.58 7.95 -51.93 -0.41 0.16 16 38 H 0.06 0.96 7.31 -51.93 -0.38 0.58 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 1.64 5.89 -51.93 -0.31 1.33 16 LS Contribution 298.68 15.07 4.50 4.50 Total: -1.00 -28.84 298.68 -7.43 -36.27 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.94 Total: -1.51 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 0.07 Total: -19.61 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.04 Total: -36.68 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.84 -7.43 -36.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694282575.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.329 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds