Wall clock time and date at job start Mon Mar 30 2020 02:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46936 * 2 1 4 4 C 1.53003 * 109.47407 * 119.99607 * 2 1 3 5 5 C 1.50692 * 109.47510 * 185.00046 * 4 2 1 6 6 H 1.08011 * 120.00074 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00541 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99341 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00584 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47109 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47436 * 119.99845 * 9 7 5 12 12 H 1.48497 * 109.47283 * 240.00255 * 9 7 5 13 13 N 1.46900 * 109.47280 * 240.00070 * 2 1 3 14 14 C 1.46904 * 110.99718 * 306.04232 * 13 2 1 15 15 C 1.46889 * 111.00157 * 69.99888 * 13 2 1 16 16 H 1.08997 * 112.85211 * 314.78794 * 15 13 2 17 17 C 1.53788 * 113.61483 * 183.59485 * 15 13 2 18 18 C 1.53779 * 87.08266 * 220.01753 * 17 15 13 19 19 C 1.53781 * 87.08196 * 25.43099 * 18 17 15 20 20 C 1.52998 * 113.61800 * 220.02188 * 19 18 17 21 21 C 1.53003 * 113.61507 * 89.11672 * 19 18 17 22 22 H 1.08999 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47119 * 300.00283 * 1 2 3 24 24 H 1.09002 * 109.47183 * 60.00043 * 1 2 3 25 25 H 1.08995 * 109.46880 * 305.00369 * 4 2 1 26 26 H 1.09003 * 109.46770 * 65.00220 * 4 2 1 27 27 H 0.96999 * 119.99850 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.46657 * 66.48566 * 14 13 2 29 29 H 1.09001 * 109.47038 * 186.48464 * 14 13 2 30 30 H 1.09002 * 109.47350 * 306.48681 * 14 13 2 31 31 H 1.09002 * 113.61234 * 334.56746 * 17 15 13 32 32 H 1.09007 * 113.61423 * 105.38718 * 17 15 13 33 33 H 1.08996 * 113.61936 * 139.98044 * 18 17 15 34 34 H 1.08998 * 113.61585 * 270.79956 * 18 17 15 35 35 H 1.08996 * 109.47840 * 157.49828 * 20 19 18 36 36 H 1.09005 * 109.46976 * 277.49618 * 20 19 18 37 37 H 1.09002 * 109.47003 * 37.49385 * 20 19 18 38 38 H 1.09001 * 109.46455 * 315.71097 * 21 19 18 39 39 H 1.08997 * 109.47056 * 75.71084 * 21 19 18 40 40 H 1.08999 * 109.47248 * 195.71554 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6148 1.3128 6 1 4.0790 -0.0854 0.5396 7 6 4.2305 -1.1934 2.3578 8 7 3.5764 -1.8376 3.2996 9 14 6.0920 -1.0609 2.4369 10 1 6.5837 -0.2907 1.2663 11 1 6.4861 -0.3657 3.6885 12 1 6.6863 -2.4217 2.4184 13 7 2.0196 -0.6925 -1.1994 14 6 1.4343 -2.0355 -1.3077 15 6 1.7529 0.0972 -2.4090 16 1 0.7425 0.5052 -2.4338 17 6 2.1630 -0.6120 -3.7105 18 6 2.6715 0.7536 -4.2018 19 6 2.8456 1.1331 -2.7218 20 6 2.4339 2.5724 -2.4056 21 6 4.2179 0.7675 -2.1525 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6054 -0.2616 2.1369 26 1 1.7517 -1.7715 1.2056 27 1 4.0608 -2.2450 4.0346 28 1 0.3620 -1.9513 -1.4847 29 1 1.8988 -2.5684 -2.1374 30 1 1.6078 -2.5833 -0.3814 31 1 2.9540 -1.3496 -3.5752 32 1 1.3188 -0.9967 -4.2828 33 1 3.6110 0.6977 -4.7516 34 1 1.9132 1.3418 -4.7186 35 1 2.1984 2.6584 -1.3449 36 1 3.2540 3.2472 -2.6515 37 1 1.5563 2.8372 -2.9954 38 1 4.4892 -0.2375 -2.4759 39 1 4.9616 1.4783 -2.5125 40 1 4.1802 0.8010 -1.0637 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694282575.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:45 Heat of formation + Delta-G solvation = -4.988027 kcal Electronic energy + Delta-G solvation = -17021.167653 eV Core-core repulsion = 14642.526722 eV Total energy + Delta-G solvation = -2378.640931 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.06775 -37.79971 -34.75086 -32.31702 -30.83643 -29.26364 -28.08008 -27.34945 -25.46491 -24.19425 -22.88786 -20.40017 -18.85957 -18.29897 -17.24006 -16.53805 -15.87439 -15.67227 -15.35895 -14.65197 -14.16016 -14.09955 -13.98780 -13.70473 -13.55525 -13.17611 -12.96245 -12.88937 -12.79719 -12.52563 -12.33081 -12.29437 -12.20927 -11.88194 -11.58666 -11.51708 -11.18288 -10.99550 -10.71122 -10.55382 -10.44058 -8.77987 -8.06480 -6.09569 1.40805 1.42301 1.54924 2.49159 3.21928 3.35194 3.75194 3.77619 4.00361 4.05459 4.28862 4.42538 4.50472 4.51010 4.58463 4.72204 4.78546 4.79906 4.89101 4.92182 5.02246 5.02824 5.12996 5.13811 5.18603 5.23360 5.24989 5.31729 5.39677 5.46793 5.52805 5.74510 5.77291 5.80573 5.99865 6.40535 6.56219 6.67991 7.06561 7.55788 9.06187 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026449 B = 0.009551 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.377299 B = 2930.989609 C = 3390.962168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 H 0.060 0.940 4 C 0.036 3.964 5 C -0.490 4.490 6 H 0.068 0.932 7 C -0.008 4.008 8 N -0.943 5.943 9 Si 0.950 3.050 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.515 5.515 14 C 0.033 3.967 15 C 0.052 3.948 16 H 0.064 0.936 17 C -0.126 4.126 18 C -0.120 4.120 19 C -0.076 4.076 20 C -0.133 4.133 21 C -0.108 4.108 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.063 0.937 25 H -0.014 1.014 26 H -0.004 1.004 27 H 0.256 0.744 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.038 0.962 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 5.424 -15.032 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.010 4.010 3 H 0.078 0.922 4 C -0.002 4.002 5 C -0.528 4.528 6 H 0.086 0.914 7 C -0.203 4.203 8 N -0.586 5.586 9 Si 0.777 3.223 10 H -0.186 1.186 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.237 5.237 14 C -0.115 4.115 15 C -0.056 4.056 16 H 0.081 0.919 17 C -0.164 4.164 18 C -0.157 4.157 19 C -0.077 4.077 20 C -0.190 4.190 21 C -0.166 4.166 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.004 0.996 26 H 0.014 0.986 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.183 5.283 -14.844 16.074 hybrid contribution -0.001 -0.255 0.867 0.903 sum -3.185 5.027 -13.977 15.192 Atomic orbital electron populations 1.22385 0.97867 1.01488 1.01584 1.21535 0.91480 0.97138 0.90861 0.92164 1.19064 0.95448 0.94266 0.91378 1.21650 0.93100 1.31602 1.06454 0.91395 1.25838 1.02511 0.95999 0.95966 1.70113 1.36803 1.38489 1.13213 0.85601 0.81217 0.77546 0.77934 1.18602 1.21114 1.21210 1.62210 1.58118 1.02142 1.01278 1.22233 0.96652 0.91294 1.01337 1.23400 0.96841 0.95659 0.89688 0.91860 1.22914 1.01071 0.97256 0.95156 1.22883 1.01803 0.96299 0.94744 1.21864 0.95237 0.94359 0.96195 1.21737 1.01398 0.95186 1.00719 1.21328 0.94575 1.00023 1.00649 0.93045 0.92888 0.91808 0.99611 0.98610 0.93526 0.95359 0.91158 0.93804 0.90582 0.90685 0.90773 0.88775 0.94276 0.92108 0.91487 0.93535 0.93020 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.00 8.48 71.98 0.61 -5.39 16 2 C 0.10 4.03 2.25 44.91 0.10 4.13 16 3 H 0.06 2.56 7.05 -2.38 -0.02 2.54 16 4 C 0.04 1.87 4.37 29.85 0.13 2.00 16 5 C -0.49 -27.73 8.84 25.60 0.23 -27.51 16 6 H 0.07 3.77 5.61 -2.90 -0.02 3.75 16 7 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 8 N -0.94 -58.67 13.29 21.45 0.28 -58.39 16 9 Si 0.95 45.98 29.54 68.60 2.03 48.01 16 10 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 13 N -0.51 -18.98 3.45 -868.70 -3.00 -21.98 16 14 C 0.03 1.16 8.29 127.69 1.06 2.21 16 15 C 0.05 1.53 2.52 45.45 0.11 1.65 16 16 H 0.06 1.78 6.42 -2.39 -0.02 1.76 16 17 C -0.13 -3.07 6.25 31.12 0.19 -2.88 16 18 C -0.12 -2.57 7.22 31.12 0.22 -2.34 16 19 C -0.08 -2.08 1.33 -51.65 -0.07 -2.15 16 20 C -0.13 -3.33 9.20 71.98 0.66 -2.67 16 21 C -0.11 -3.54 8.36 71.98 0.60 -2.93 16 22 H 0.05 1.77 6.47 -2.39 -0.02 1.75 16 23 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 1.87 6.56 -2.39 -0.02 1.85 16 25 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H 0.00 -0.25 6.22 -2.39 -0.01 -0.26 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.03 0.89 6.62 -2.38 -0.02 0.87 16 29 H 0.07 2.20 6.94 -2.39 -0.02 2.19 16 30 H 0.04 1.83 6.11 -2.39 -0.01 1.81 16 31 H 0.08 2.05 7.14 -2.39 -0.02 2.03 16 32 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 34 H 0.09 1.67 7.97 -2.39 -0.02 1.65 16 35 H 0.04 1.12 7.14 -2.39 -0.02 1.10 16 36 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.07 1.40 7.95 -2.39 -0.02 1.38 16 38 H 0.05 1.56 7.31 -2.39 -0.02 1.54 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.04 1.74 5.89 -2.39 -0.01 1.73 16 Total: -1.00 -63.20 298.68 4.62 -58.57 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.99 Total: 9.65 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 4.32 Total: -35.87 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -2.71 Total: -80.36 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -63.20 4.62 -58.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694282575.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.586 kcal (2) G-P(sol) polarization free energy of solvation -63.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds