Wall clock time and date at job start Mon Mar 30 2020 02:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.53001 * 109.47345 * 120.00128 * 2 1 3 5 5 H 1.08996 * 109.54106 * 299.90385 * 4 2 1 6 6 C 1.53120 * 109.50234 * 60.00115 * 4 2 1 7 7 C 1.53119 * 109.16202 * 177.59979 * 6 4 2 8 8 C 1.53044 * 109.27589 * 302.34077 * 7 6 4 9 9 N 1.46847 * 109.51335 * 59.18419 * 8 7 6 10 10 C 1.46899 * 110.99862 * 174.15436 * 9 8 7 11 11 H 1.09004 * 109.46859 * 186.04870 * 10 9 8 12 12 C 1.52996 * 109.47201 * 306.04543 * 10 9 8 13 13 C 1.50696 * 109.47180 * 66.05223 * 10 9 8 14 14 H 1.08004 * 120.00207 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00335 * 180.02562 * 13 10 9 16 16 N 1.31517 * 119.99896 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00163 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.46774 * 89.99782 * 17 15 13 19 19 H 1.48506 * 109.47133 * 209.99544 * 17 15 13 20 20 H 1.48500 * 109.47296 * 330.00052 * 17 15 13 21 21 C 1.46847 * 111.20163 * 298.24410 * 9 8 7 22 22 H 1.09007 * 109.47246 * 299.99746 * 1 2 3 23 23 H 1.08996 * 109.47472 * 59.99375 * 1 2 3 24 24 H 1.09001 * 109.47270 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47512 * 239.99808 * 2 1 3 26 26 H 1.08998 * 109.47306 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47285 * 300.00739 * 3 2 1 28 28 H 1.09007 * 109.46680 * 59.99907 * 3 2 1 29 29 H 1.08993 * 109.52850 * 57.69063 * 6 4 2 30 30 H 1.09003 * 109.57279 * 297.52851 * 6 4 2 31 31 H 1.09000 * 109.50507 * 182.40742 * 7 6 4 32 32 H 1.08999 * 109.54263 * 62.29675 * 7 6 4 33 33 H 1.09002 * 109.46396 * 179.19729 * 8 7 6 34 34 H 1.08994 * 109.46485 * 299.17654 * 8 7 6 35 35 H 1.08991 * 109.47705 * 299.99853 * 12 10 9 36 36 H 1.08997 * 109.47049 * 60.00699 * 12 10 9 37 37 H 1.09005 * 109.47023 * 180.02562 * 12 10 9 38 38 H 0.96997 * 120.00157 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.46836 * 301.74653 * 21 9 8 40 40 H 1.08995 * 109.45748 * 181.76188 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6787 -0.2074 2.1399 6 6 1.5300 -2.1651 1.2499 7 6 2.0936 -2.8966 2.4713 8 6 3.6225 -2.8383 2.4341 9 7 4.0601 -1.4365 2.4356 10 6 5.5223 -1.3416 2.5401 11 1 5.8118 -0.2962 2.6472 12 6 5.9985 -2.1303 3.7616 13 6 6.1529 -1.9126 1.2963 14 1 5.5298 -2.3070 0.5071 15 6 7.5253 -1.9326 1.1659 16 7 8.2842 -1.4528 2.1270 17 14 8.3070 -2.6410 -0.3757 18 1 8.4754 -1.5644 -1.3847 19 1 9.6343 -3.2155 -0.0385 20 1 7.4328 -3.7060 -0.9294 21 6 3.5704 -0.7260 1.2475 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.8586 -2.6679 0.3405 30 1 0.4409 -2.1676 1.2944 31 1 1.7687 -3.9369 2.4544 32 1 1.7333 -2.4174 3.3816 33 1 4.0267 -3.3459 3.3099 34 1 3.9828 -3.3302 1.5307 35 1 5.5425 -1.7173 4.6613 36 1 5.7091 -3.1757 3.6545 37 1 7.0835 -2.0595 3.8394 38 1 9.2497 -1.4665 2.0353 39 1 3.9309 -1.2281 0.3496 40 1 3.9367 0.3005 1.2616 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694405417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:21 Heat of formation + Delta-G solvation = -23.905207 kcal Electronic energy + Delta-G solvation = -16798.367551 eV Core-core repulsion = 14418.906310 eV Total energy + Delta-G solvation = -2379.461241 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.87908 -35.83864 -33.37924 -31.60088 -29.50084 -28.06513 -26.96291 -25.15927 -23.43740 -22.36068 -20.57000 -19.17417 -18.94338 -16.19935 -15.47378 -14.65495 -14.45682 -13.81030 -13.63654 -13.41183 -13.21714 -13.01276 -12.54958 -12.15498 -11.96640 -11.77600 -11.37381 -11.17962 -10.97941 -10.93063 -10.64340 -10.57706 -10.36998 -10.27044 -10.13463 -10.03865 -9.88201 -9.46767 -9.21945 -9.09636 -8.35962 -7.04015 -5.95375 -4.08551 3.27505 3.34701 3.37664 4.41685 4.90242 5.08943 5.19254 5.29419 5.31444 5.53325 5.61577 5.65026 5.80679 5.91026 5.98960 6.02194 6.06855 6.22428 6.25726 6.30803 6.41566 6.46361 6.47502 6.51681 6.60503 6.68278 6.84187 6.90452 6.99965 7.06596 7.10199 7.23844 7.63986 7.76133 8.03967 8.22360 8.42557 8.51786 9.02293 9.58949 11.04011 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027977 B = 0.008438 C = 0.007560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.584939 B = 3317.709240 C = 3702.690773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.080 4.080 5 H 0.069 0.931 6 C -0.112 4.112 7 C -0.117 4.117 8 C 0.059 3.941 9 N -0.538 5.538 10 C 0.206 3.794 11 H 0.038 0.962 12 C -0.134 4.134 13 C -0.539 4.539 14 H 0.055 0.945 15 C 0.067 3.933 16 N -0.888 5.888 17 Si 0.886 3.114 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.071 3.929 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.014 0.986 36 H 0.028 0.972 37 H 0.083 0.917 38 H 0.260 0.740 39 H 0.035 0.965 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.187 0.985 -2.091 12.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.099 4.099 5 H 0.088 0.912 6 C -0.149 4.149 7 C -0.155 4.155 8 C -0.070 4.070 9 N -0.262 5.262 10 C 0.100 3.900 11 H 0.056 0.944 12 C -0.192 4.192 13 C -0.578 4.578 14 H 0.073 0.927 15 C -0.135 4.135 16 N -0.526 5.526 17 Si 0.714 3.286 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.057 4.057 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.033 0.967 36 H 0.047 0.953 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.179 1.241 -1.615 12.348 hybrid contribution 0.965 -0.824 -1.643 2.076 sum -11.213 0.417 -3.259 11.685 Atomic orbital electron populations 1.21867 0.95888 1.01414 1.01061 1.21114 0.95022 0.96284 0.98618 1.21877 1.01889 0.95866 1.00894 1.21272 0.96575 0.95050 0.97004 0.91207 1.21628 0.99047 0.95936 0.98334 1.21631 0.96935 0.98815 0.98134 1.21931 0.92832 0.91442 1.00774 1.62417 1.14613 1.11630 1.37530 1.19251 0.80724 0.96496 0.93508 0.94430 1.21854 1.03464 0.97803 0.96052 1.21732 0.91806 1.40689 1.03569 0.92678 1.24910 0.97352 0.95170 0.96070 1.69882 1.04635 1.46092 1.32031 0.86698 0.78786 0.79356 0.83778 1.20724 1.21184 1.20105 1.21900 0.91965 0.98774 0.93072 0.92958 0.93376 0.92686 0.91624 0.91890 0.93476 0.92910 0.92786 0.92750 0.92903 0.92041 0.91283 0.95002 0.96688 0.95313 0.89838 0.92965 0.94697 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.84 37.15 0.33 -1.33 16 2 C -0.09 -1.24 2.51 -90.62 -0.23 -1.47 16 3 C -0.15 -1.95 8.85 37.16 0.33 -1.62 16 4 C -0.08 -1.27 1.94 -90.54 -0.18 -1.44 16 5 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 6 C -0.11 -1.68 4.85 -26.61 -0.13 -1.81 16 7 C -0.12 -1.89 6.09 -26.65 -0.16 -2.05 16 8 C 0.06 1.18 4.76 -3.83 -0.02 1.16 16 9 N -0.54 -11.71 4.69 -228.08 -1.07 -12.79 16 10 C 0.21 5.24 2.45 -68.87 -0.17 5.08 16 11 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 12 C -0.13 -3.29 8.55 37.16 0.32 -2.97 16 13 C -0.54 -14.64 7.19 -34.44 -0.25 -14.89 16 14 H 0.06 1.52 5.84 -52.48 -0.31 1.21 16 15 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 16 N -0.89 -25.32 11.32 55.43 0.63 -24.69 16 17 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.07 1.41 3.92 -3.83 -0.02 1.40 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.61 6.49 -51.93 -0.34 0.27 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.92 6.45 -51.93 -0.34 0.58 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.71 6.58 -51.93 -0.34 0.37 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.41 5.87 -51.93 -0.30 1.10 16 34 H 0.03 0.70 7.03 -51.93 -0.37 0.33 16 35 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.03 0.67 6.20 -51.93 -0.32 0.35 16 37 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.03 0.76 6.57 -51.93 -0.34 0.42 16 40 H 0.06 1.31 6.46 -51.93 -0.34 0.98 16 LS Contribution 293.56 15.07 4.42 4.42 Total: -1.00 -27.57 293.56 -8.39 -35.97 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.09 Total: -1.08 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -0.26 Total: -18.20 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.44 Total: -37.48 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.57 -8.39 -35.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694405417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.060 kcal (2) G-P(sol) polarization free energy of solvation -27.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds