Wall clock time and date at job start Mon Mar 30 2020 02:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.53001 * 109.47345 * 120.00128 * 2 1 3 5 5 H 1.08996 * 109.54106 * 299.90385 * 4 2 1 6 6 C 1.53120 * 109.50234 * 60.00115 * 4 2 1 7 7 C 1.53119 * 109.16202 * 177.59979 * 6 4 2 8 8 C 1.53044 * 109.27589 * 302.34077 * 7 6 4 9 9 N 1.46847 * 109.51335 * 59.18419 * 8 7 6 10 10 C 1.46899 * 110.99862 * 174.15436 * 9 8 7 11 11 H 1.09004 * 109.46859 * 186.04870 * 10 9 8 12 12 C 1.52996 * 109.47201 * 306.04543 * 10 9 8 13 13 C 1.50696 * 109.47180 * 66.05223 * 10 9 8 14 14 H 1.08004 * 120.00207 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00335 * 180.02562 * 13 10 9 16 16 N 1.31517 * 119.99896 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00163 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.46774 * 89.99782 * 17 15 13 19 19 H 1.48506 * 109.47133 * 209.99544 * 17 15 13 20 20 H 1.48500 * 109.47296 * 330.00052 * 17 15 13 21 21 C 1.46847 * 111.20163 * 298.24410 * 9 8 7 22 22 H 1.09007 * 109.47246 * 299.99746 * 1 2 3 23 23 H 1.08996 * 109.47472 * 59.99375 * 1 2 3 24 24 H 1.09001 * 109.47270 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47512 * 239.99808 * 2 1 3 26 26 H 1.08998 * 109.47306 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47285 * 300.00739 * 3 2 1 28 28 H 1.09007 * 109.46680 * 59.99907 * 3 2 1 29 29 H 1.08993 * 109.52850 * 57.69063 * 6 4 2 30 30 H 1.09003 * 109.57279 * 297.52851 * 6 4 2 31 31 H 1.09000 * 109.50507 * 182.40742 * 7 6 4 32 32 H 1.08999 * 109.54263 * 62.29675 * 7 6 4 33 33 H 1.09002 * 109.46396 * 179.19729 * 8 7 6 34 34 H 1.08994 * 109.46485 * 299.17654 * 8 7 6 35 35 H 1.08991 * 109.47705 * 299.99853 * 12 10 9 36 36 H 1.08997 * 109.47049 * 60.00699 * 12 10 9 37 37 H 1.09005 * 109.47023 * 180.02562 * 12 10 9 38 38 H 0.96997 * 120.00157 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.46836 * 301.74653 * 21 9 8 40 40 H 1.08995 * 109.45748 * 181.76188 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6787 -0.2074 2.1399 6 6 1.5300 -2.1651 1.2499 7 6 2.0936 -2.8966 2.4713 8 6 3.6225 -2.8383 2.4341 9 7 4.0601 -1.4365 2.4356 10 6 5.5223 -1.3416 2.5401 11 1 5.8118 -0.2962 2.6472 12 6 5.9985 -2.1303 3.7616 13 6 6.1529 -1.9126 1.2963 14 1 5.5298 -2.3070 0.5071 15 6 7.5253 -1.9326 1.1659 16 7 8.2842 -1.4528 2.1270 17 14 8.3070 -2.6410 -0.3757 18 1 8.4754 -1.5644 -1.3847 19 1 9.6343 -3.2155 -0.0385 20 1 7.4328 -3.7060 -0.9294 21 6 3.5704 -0.7260 1.2475 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.8586 -2.6679 0.3405 30 1 0.4409 -2.1676 1.2944 31 1 1.7687 -3.9369 2.4544 32 1 1.7333 -2.4174 3.3816 33 1 4.0267 -3.3459 3.3099 34 1 3.9828 -3.3302 1.5307 35 1 5.5425 -1.7173 4.6613 36 1 5.7091 -3.1757 3.6545 37 1 7.0835 -2.0595 3.8394 38 1 9.2497 -1.4665 2.0353 39 1 3.9309 -1.2281 0.3496 40 1 3.9367 0.3005 1.2616 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694405417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:21 Heat of formation + Delta-G solvation = -39.501980 kcal Electronic energy + Delta-G solvation = -16799.043878 eV Core-core repulsion = 14418.906310 eV Total energy + Delta-G solvation = -2380.137568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.37998 -37.35833 -35.07472 -33.36222 -31.07699 -29.68685 -28.04332 -27.26968 -24.99942 -23.80615 -22.11708 -20.68463 -20.44657 -18.22818 -17.21062 -16.27631 -16.00924 -15.31630 -15.01215 -14.84614 -14.77923 -14.55332 -14.10027 -13.52398 -13.35894 -13.15113 -12.98234 -12.85156 -12.68936 -12.53129 -12.19728 -12.12495 -12.02698 -11.85128 -11.72635 -11.59556 -11.31100 -11.21089 -10.83281 -10.68076 -10.48932 -8.92321 -8.05366 -6.28563 1.34155 1.35621 1.44840 2.37508 3.12651 3.40131 3.87172 4.00717 4.05977 4.27625 4.36105 4.45755 4.60756 4.67986 4.77192 4.81243 4.85300 4.89252 4.99933 5.04702 5.08040 5.09120 5.12244 5.14298 5.22298 5.25852 5.29272 5.33602 5.38463 5.47934 5.51568 5.60450 5.69710 5.71063 5.99163 6.20386 6.39071 6.71367 6.93078 7.42481 8.90011 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027977 B = 0.008438 C = 0.007560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.584939 B = 3317.709240 C = 3702.690773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.072 4.072 5 H 0.071 0.929 6 C -0.109 4.109 7 C -0.110 4.110 8 C 0.059 3.941 9 N -0.538 5.538 10 C 0.208 3.792 11 H 0.002 0.998 12 C -0.121 4.121 13 C -0.547 4.547 14 H 0.046 0.954 15 C 0.020 3.980 16 N -0.913 5.913 17 Si 0.947 3.053 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.273 1.273 21 C 0.076 3.924 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.007 0.993 35 H 0.029 0.971 36 H 0.033 0.967 37 H 0.059 0.941 38 H 0.262 0.738 39 H 0.009 0.991 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.301 0.497 -2.721 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.090 4.090 5 H 0.090 0.910 6 C -0.146 4.146 7 C -0.148 4.148 8 C -0.069 4.069 9 N -0.262 5.262 10 C 0.101 3.899 11 H 0.020 0.980 12 C -0.179 4.179 13 C -0.586 4.586 14 H 0.064 0.936 15 C -0.180 4.180 16 N -0.553 5.553 17 Si 0.773 3.227 18 H -0.203 1.203 19 H -0.205 1.205 20 H -0.198 1.198 21 C -0.053 4.053 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.026 0.974 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.027 0.973 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.309 0.752 -2.247 14.504 hybrid contribution 1.633 -0.638 -1.429 2.261 sum -12.676 0.114 -3.675 13.199 Atomic orbital electron populations 1.21811 0.93374 1.02278 1.02126 1.21096 0.97005 0.95854 0.96894 1.21864 1.00341 0.96138 1.02097 1.21212 0.93033 0.96423 0.98366 0.91019 1.21634 1.00901 0.94647 0.97431 1.21598 0.93386 1.00732 0.99047 1.21988 0.95995 0.89725 0.99214 1.62390 1.12195 1.13102 1.38498 1.19062 0.83218 0.94260 0.93377 0.98008 1.21671 1.01850 0.98063 0.96349 1.21890 0.92102 1.40599 1.04007 0.93551 1.25635 0.97885 0.95589 0.98879 1.70000 1.04855 1.46855 1.33562 0.85733 0.77964 0.78681 0.80338 1.20268 1.20508 1.19819 1.21909 0.95147 0.97170 0.91049 0.92283 0.91991 0.91901 0.92477 0.94314 0.91664 0.92326 0.93479 0.89478 0.90480 0.91271 0.91934 0.97427 0.95241 0.94796 0.92248 0.92839 0.97308 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.84 71.98 0.64 -2.03 16 2 C -0.09 -2.27 2.51 -10.80 -0.03 -2.30 16 3 C -0.15 -3.72 8.85 71.98 0.64 -3.08 16 4 C -0.07 -2.16 1.94 -10.74 -0.02 -2.18 16 5 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 6 C -0.11 -2.98 4.85 30.67 0.15 -2.83 16 7 C -0.11 -3.27 6.09 30.65 0.19 -3.09 16 8 C 0.06 2.35 4.76 86.33 0.41 2.76 16 9 N -0.54 -23.79 4.69 -875.51 -4.11 -27.90 16 10 C 0.21 10.93 2.45 44.17 0.11 11.04 16 11 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 12 C -0.12 -6.09 8.55 71.98 0.62 -5.47 16 13 C -0.55 -30.56 7.19 25.60 0.18 -30.38 16 14 H 0.05 2.63 5.84 -2.91 -0.02 2.61 16 15 C 0.02 1.11 5.30 84.65 0.45 1.56 16 16 N -0.91 -53.24 11.32 21.45 0.24 -53.00 16 17 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 21 C 0.08 3.06 3.92 86.33 0.34 3.40 16 22 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 1.12 6.49 -2.39 -0.02 1.11 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.04 1.14 6.45 -2.39 -0.02 1.13 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.39 8.14 -2.38 -0.02 1.38 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.89 6.58 -2.39 -0.02 1.87 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 2.53 5.87 -2.39 -0.01 2.51 16 34 H 0.01 0.33 7.03 -2.39 -0.02 0.31 16 35 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.03 1.62 6.20 -2.39 -0.01 1.60 16 37 H 0.06 3.27 6.07 -2.38 -0.01 3.25 16 38 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 39 H 0.01 0.39 6.57 -2.38 -0.02 0.38 16 40 H 0.05 2.09 6.46 -2.39 -0.02 2.08 16 Total: -1.00 -60.08 293.56 2.81 -57.27 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.98 Total: 9.81 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 3.67 Total: -32.62 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -3.87 Total: -80.90 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -60.08 2.81 -57.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694405417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.770 kcal (2) G-P(sol) polarization free energy of solvation -60.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds